Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002746

Physical Location & Seq

Genomic Coordinates Reverse (-)

10379159 .. 10379407

Gene Structure 249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G24410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGATTGAAAAACATGGTGTGCGATGTTTTGAGCTATCGAGGAAACTTGCTGAAGAAACCAACATATACAAAGGTATCACACTCCTCTTCAATAATCCCGTAGATAATAGAAAACCCAAAGAAAGATGGAGACTTTATCATTTTAAGGATGGTGAACCACTGAAAGAGACACTTTGCATTCATTACCAAATTTGCTACCTCTTTGGACGTGAGAGAAAGATCCGACATTCCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0008283 GO:0008380 GO:0009507 GO:0009536 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0019222 GO:0031047 GO:0031050 GO:0031503 GO:0032991 GO:0033036 GO:0034613 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0040008 GO:0040029 GO:0042221 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0048519 GO:0048638 GO:0050657 GO:0050658 GO:0050789 GO:0050793 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051235 GO:0051236 GO:0051237 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070274 GO:0070727 GO:0070887 GO:0070918 GO:0071166 GO:0071310 GO:0071359 GO:0071407 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

ko04141 ko04212 ko04922 ko05134 map04141 map04212 map04922 map05134

Pfam Domains

Protein Families

FHA

Protein Analysis

78

Amino Acids

9.57

Weight (kDa)

9.44

Isoelectric Point (pI)

35.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24410 AT3G20550
fragaria_vesca	FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_6g43590
malus_domestica	MD03G1208700.v1.1 MD06G1125500.v1.1 MD11G1223400.v1.1
prunus_persica	Prupe.4G208000_v2.0.a1
pyrus_communis	pycom06g11580 pycom11g19700
rosa_chinensis	RchiOBHm_Chr2g0160171 RchiOBHm_Chr4g0405041 RchiOBHm_Chr5g0037921
rosa_laevigata	RLG00000008882 RLG00000021201 RLG00000033823
rosa_multiflora	Rmu_sc0001744.1_g000004 Rmu_ssc0000241.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042940 Rroxscaffold_5G00349230
rosa_rugosa	Rorug04G0052500 Rorug05G0169400 Rorug05G0169500 Rorug05G0169600
rosa_samantha	Rh2BG560700 Rh4AG127600 Rh4BG121300 Rh4CG135400 Rh4DG121700 Rh5AG257700 Rh5BG260500 Rh5CG293100
rosa_wichuraiana	Rw2G045270 Rw4G010330 Rw5G023890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	214
AcsI	RAATTY	1 cut(s)	189
AcuI	CTGAAG	1 cut(s)	72
AgsI	TTSAA	2 cut(s)	8, 91
AjiI	CACGTC	1 cut(s)	209
AluBI	AGCT	1 cut(s)	34
AluI	AGCT	1 cut(s)	34
Alw26I	GTCTC	2 cut(s)	124, 161
AlwI	GGATC	1 cut(s)	214
ApoI	RAATTY	1 cut(s)	189
AsuHPI	GGTGA	1 cut(s)	164
BaeI	ACNNNNGTAYC	2 cut(s)	58, 91
BccI	CCATC	2 cut(s)	120, 143
BcoDI	GTCTC	2 cut(s)	124, 161
BmgBI	CACGTC	1 cut(s)	209
BseGI	GGATG	1 cut(s)	154
BseRI	GAGGAG	1 cut(s)	74
BsmAI	GTCTC	2 cut(s)	124, 161
BsmI	GAATGC	1 cut(s)	177
Bsp143I	GATC	1 cut(s)	219
BspPI	GGATC	1 cut(s)	214
BssMI	GATC	1 cut(s)	219
Bst6I	CTCTTC	1 cut(s)	92
BstF5I	GGATG	1 cut(s)	154
BstKTI	GATC	1 cut(s)	222
BstMAI	GTCTC	2 cut(s)	124, 161
BstMBI	GATC	1 cut(s)	219
BstX2I	RGATCY	1 cut(s)	219
BstYI	RGATCY	1 cut(s)	219
BtgZI	GCGATG	1 cut(s)	37
BtrI	CACGTC	1 cut(s)	209
BtsCI	GGATG	1 cut(s)	154
BtsIMutI	CAGTG	1 cut(s)	158
CviAII	CATG	1 cut(s)	14
CviJI	RGCY	1 cut(s)	34
CviKI_1	RGCY	1 cut(s)	34
DpnI	GATC	1 cut(s)	221
DpnII	GATC	1 cut(s)	219
Eam1104I	CTCTTC	1 cut(s)	92
EarI	CTCTTC	1 cut(s)	92
Eco57I	CTGAAG	1 cut(s)	72
FaeI	CATG	1 cut(s)	17
FaiI	YATR	3 cut(s)	15, 65, 67
FalI	AAGNNNNNCTT	2 cut(s)	156, 188
FatI	CATG	1 cut(s)	13
FokI	GGATG	1 cut(s)	161
Hin1II	CATG	1 cut(s)	17
HphI	GGTGA	1 cut(s)	164
Hpy166II	GTNNAC	1 cut(s)	155
Hpy188I	TCNGA	1 cut(s)	224
Hpy8I	GTNNAC	1 cut(s)	155
HpyCH4IV	ACGT	1 cut(s)	208
HpyCH4V	TGCA	1 cut(s)	177
HpySE526I	ACGT	1 cut(s)	208
Hsp92II	CATG	1 cut(s)	17
Kzo9I	GATC	1 cut(s)	219
MaeII	ACGT	1 cut(s)	208
MalI	GATC	1 cut(s)	221
MboI	GATC	1 cut(s)	219
MboII	GAAGA	2 cut(s)	65, 79
MflI	RGATCY	1 cut(s)	219
MluCI	AATT	1 cut(s)	189
MnlI	CCTC	3 cut(s)	33, 95, 209
MseI	TTAA	1 cut(s)	144
Mva1269I	GAATGC	1 cut(s)	177
NdeII	GATC	1 cut(s)	219
NlaIII	CATG	1 cut(s)	17
PctI	GAATGC	1 cut(s)	177
PsuI	RGATCY	1 cut(s)	219
SaqAI	TTAA	1 cut(s)	144
Sau3AI	GATC	1 cut(s)	219
SetI	ASST	4 cut(s)	36, 76, 201, 211
SgeI	CNNG	5 cut(s)	26, 51, 59, 110, 221
Sse9I	AATT	1 cut(s)	189
TaiI	ACGT	1 cut(s)	211
TaqI	TCGA	1 cut(s)	38
TasI	AATT	1 cut(s)	189
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TscAI	CASTG	1 cut(s)	165
TspDTI	ATGAA	1 cut(s)	170
TspRI	CASTG	1 cut(s)	165
XapI	RAATTY	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.