FvH4_3g22101

FHA domain-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
15134586 .. 15141035
6450 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g22101.t5

Sequence Viewer

Length: 1293 bp
ATGGGGCGTCATCTAAGGAATGATTCTAAATCTCCAGTACAGGACCATGGGTCTCCTCGTAGGAGGAGTCCATCTAGGAAGAGTCAATCTCAAACAGAAAGATCTCCTACTCGAGAGAGAAAGTCCCACAGAGGCAGTTCTCCACCAAGAGAGAAACATTCAAGTCGCCCCAAGTCTCCTAAGCATGCAAGGTCACCCTCTCCCCCTCCTCGCTCTCCTTCTCCCCGGACAAAACGGCTAAGAAGAGCTGAAGCTGAAAGAGTGCCTGGGAGAGAACATGAAAGGATCAATGATAGGGATTTACAGGAAGGTGGTTCAGAGAGAGATTTGGGGGATAGAAAGGAGAAATCGTTGGGAAGGAATGACACCGATGATAAATCTTCAAGATCAAGACGTGGTACTTCTCCATCTGATCGACACCGTAGGAGTAGGCATAGGTCTCGCTCGCCTCAACATGCTGGTGATACAAGAGATGGGGAGAAAGTAACTGACGGCCGTGGAAGAAATCATAGCAGAGGGAGTGATAAAAGCATGCACAGGGAAAAAGGTTCAGACTGGGAAAGTCAGGCTGAAAGAATGGAGAGAAGGACAGCAAAAGACAGCACTGGTCATAGGTCTTCAAGATCAAGACATGAGCAATCTACTTCTCCATTGAATGGACACCACAAGAACAGACACCGAAATCATTCACCTCAGCAAGCAGCAGATACGAGAGCTCGTGATGAGGTGCCAGAGTCAAGAGAGGCTGAGGATGGGATTGATGAGAATGATTCAGTAGCTATGATGAAGGCTGCTGAGGAAGCCTTGGAAGTACAGAAAAAGCAAAAGCCATCGTTTGAGCTATCTGGAAAGCTTGCTGAAGAAACCAATAGATTCAGGGGTATAACACTACTATACAACGAGCCAGCCGAAGCACGGCAACCTACTGTAAGATGGCGGCTTTATGTTTTCAAGGGTGGTGAAGTTCTTGATGAACCCCTTAAGATACATCGCCAAAGCTGTTACCTTTTTGGGAGGGAAAGAAGGGTGGCAGACATCCCTACAGATCACCCGTCTTGCAGCAAACAACATGCTGTTATACAATTCCGGCAAGTAGAAAAGGAGCAACCTGATGGTACATTGTCAAAGGAAATAAAGCCTTACATAATGGACCTCGGAAGCACAAATAAGACCTTTGTTAATGAAAGTGCAATTGAACCTCAGCGATATTATGAACTTATGGAAAGAGACACGATCAAATTTGGCAATAGTAGCCGTGAGTATGTGCTACTGCATGAGAATTCTATGGATTGA

Protein Analysis

431

Amino Acids

49.59

Weight (kDa)

10.05

Isoelectric Point (pI)

78.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FHA PF00498 304 - 384 1.3e-15 FHA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 727
AccB7I CCANNNNNTGG 1 cut(s) 656
AciI CCGC 1 cut(s) 937
AclWI GGATC 1 cut(s) 293
AcoI YGGCCR 1 cut(s) 493
AcsI RAATTY 2 cut(s) 1238, 1279
AcuI CTGAAG 2 cut(s) 270, 879
AcyI GRCGYC 1 cut(s) 7
AfaI GTAC 4 cut(s) 39, 400, 813, 1117
AfiI CCNNNNNNNGG 2 cut(s) 656, 915
AflII CTTAAG 1 cut(s) 980
AgsI TTSAA 6 cut(s) 162, 384, 621, 655, 952, 1196
AhdI GACNNNNNGTC 1 cut(s) 49
AjiI CACGTC 1 cut(s) 395
AjnI CCWGG 1 cut(s) 265
AluBI AGCT 7 cut(s) 248, 254, 716, 779, 841, 853, 999
AluI AGCT 7 cut(s) 248, 254, 716, 779, 841, 853, 999
Alw21I GWGCWC 1 cut(s) 718
Alw26I GTCTC 4 cut(s) 57, 180, 444, 1221
AlwI GGATC 1 cut(s) 293
Ama87I CYCGRG 1 cut(s) 111
AoxI GGCC 1 cut(s) 493
ApeKI GCWGC 3 cut(s) 701, 791, 1059
ApoI RAATTY 2 cut(s) 1238, 1279
Asp700I GAANNNNTTC 1 cut(s) 685
AspS9I GGNCC 2 cut(s) 43, 1150
AsuC2I CCSGG 1 cut(s) 226
AsuHPI GGTGA 5 cut(s) 186, 473, 681, 971, 1040
AvaI CYCGRG 1 cut(s) 111
AvaII GGWCC 2 cut(s) 43, 1150
BanI GGYRCC 1 cut(s) 727
BanII GRGCYC 1 cut(s) 718
BauI CACGAG 1 cut(s) 717
BbsI GAAGAC 1 cut(s) 609
Bbv12I GWGCWC 1 cut(s) 718
BbvCI CCTCAGC 4 cut(s) 693, 747, 795, 1200
BbvI GCAGC 3 cut(s) 713, 778, 1071
BccI CCATC 7 cut(s) 79, 415, 467, 746, 838, 927, 1106
BceAI ACGGC 5 cut(s) 251, 480, 508, 932, 1239
BcgI CGANNNNNNTGC 2 cut(s) 422, 456
BciT130I CCWGG 1 cut(s) 267
BcnI CCSGG 1 cut(s) 226
BcoDI GTCTC 4 cut(s) 57, 180, 444, 1221
BfaI CTAG 1 cut(s) 75
BfmI CTRYAG 1 cut(s) 1041
BfrI CTTAAG 1 cut(s) 980
BglII AGATCT 1 cut(s) 101
BisI GCNGC 4 cut(s) 702, 792, 938, 1060
BlsI GCNGC 4 cut(s) 703, 793, 939, 1061
Bme1390I CCNGG 2 cut(s) 226, 267
Bme18I GGWCC 2 cut(s) 43, 1150
BmeRI GACNNNNNGTC 1 cut(s) 49
BmeT110I CYCGRG 1 cut(s) 111
BmgBI CACGTC 1 cut(s) 395
BmgT120I GGNCC 2 cut(s) 43, 1150
BmiI GGNNCC 1 cut(s) 729
BmrFI CCNGG 2 cut(s) 226, 267
BmrI ACTGGG 1 cut(s) 565
BmuI ACTGGG 1 cut(s) 565
BpiI GAAGAC 1 cut(s) 609
BplI GAGNNNNNCTC 2 cut(s) 73, 105
BpmI CTGGAG 1 cut(s) 18
Bpu10I CCTNAGC 5 cut(s) 180, 693, 747, 795, 1200
BpuMI CCSGG 1 cut(s) 226
BsaHI GRCGYC 1 cut(s) 7
BsaI GGTCTC 2 cut(s) 57, 444
BsaJI CCNNGG 6 cut(s) 46, 224, 266, 496, 804, 1153
BsaXI ACNNNNNCTCC 2 cut(s) 335, 365
Bsc4I CCNNNNNNNGG 2 cut(s) 656, 915
Bse1I ACTGG 3 cut(s) 35, 560, 610
BseBI CCWGG 1 cut(s) 267
BseDI CCNNGG 6 cut(s) 46, 224, 266, 496, 804, 1153
BseGI GGATG 2 cut(s) 757, 1035
BseLI CCNNNNNNNGG 2 cut(s) 656, 915
BseMII CTCAG 4 cut(s) 707, 738, 786, 1214
BseNI ACTGG 3 cut(s) 35, 560, 610
BseRI GAGGAG 3 cut(s) 45, 79, 198
BseX3I CGGCCG 1 cut(s) 493
BseXI GCAGC 3 cut(s) 713, 778, 1071
Bsh1285I CGRYCG 1 cut(s) 496
BshFI GGCC 1 cut(s) 495
BshNI GGYRCC 1 cut(s) 727
BsiEI CGRYCG 1 cut(s) 496
BsiHKAI GWGCWC 1 cut(s) 718
BsiHKCI CYCGRG 1 cut(s) 111
BsiSI CCGG 2 cut(s) 226, 1087
BslFI GGGAC 1 cut(s) 109
BslI CCNNNNNNNGG 2 cut(s) 656, 915
BsmAI GTCTC 4 cut(s) 57, 180, 444, 1221
BsmFI GGGAC 1 cut(s) 109
BsnI GGCC 1 cut(s) 495
Bso31I GGTCTC 2 cut(s) 57, 444
BsoBI CYCGRG 1 cut(s) 111
Bsp1286I GDGCHC 1 cut(s) 718
Bsp143I GATC 7 cut(s) 101, 285, 386, 412, 623, 1045, 1233
Bsp19I CCATGG 1 cut(s) 46
BspACI CCGC 1 cut(s) 937
BspANI GGCC 1 cut(s) 495
BspCNI CTCAG 4 cut(s) 706, 739, 787, 1213
BspLI GGNNCC 1 cut(s) 729
BspPI GGATC 1 cut(s) 293
BspQI GCTCTTC 1 cut(s) 238
BspT107I GGYRCC 1 cut(s) 727
BspTI CTTAAG 1 cut(s) 980
BspTNI GGTCTC 2 cut(s) 57, 444
BsrI ACTGG 3 cut(s) 35, 560, 610
BssECI CCNNGG 6 cut(s) 46, 224, 266, 496, 804, 1153
BssMI GATC 7 cut(s) 101, 285, 386, 412, 623, 1045, 1233
BssNI GRCGYC 1 cut(s) 7
BssSI CACGAG 1 cut(s) 717
BssT1I CCWWGG 2 cut(s) 46, 804
Bst2BI CACGAG 1 cut(s) 717
Bst2UI CCWGG 1 cut(s) 267
Bst4CI ACNGT 2 cut(s) 422, 928
Bst6I CTCTTC 2 cut(s) 74, 238
BstACI GRCGYC 1 cut(s) 7
BstAFI CTTAAG 1 cut(s) 980
BstC8I GCNNGC 6 cut(s) 186, 446, 533, 699, 855, 906
BstDEI CTNAG 7 cut(s) 14, 180, 239, 693, 747, 795, 1200
BstDSI CCRYGG 2 cut(s) 46, 496
BstEII GGTNACC 1 cut(s) 192
BstF5I GGATG 2 cut(s) 757, 1035
BstKTI GATC 7 cut(s) 104, 288, 389, 415, 626, 1048, 1236
BstMAI GTCTC 4 cut(s) 57, 180, 444, 1221
BstMBI GATC 7 cut(s) 101, 285, 386, 412, 623, 1045, 1233
BstMCI CGRYCG 1 cut(s) 496
BstMWI GCNNNNNNNGC 2 cut(s) 800, 1251
BstNI CCWGG 1 cut(s) 267
BstNSI RCATGY 4 cut(s) 188, 458, 535, 1073
BstPI GGTNACC 1 cut(s) 192
BstSCI CCNGG 2 cut(s) 224, 265
BstSFI CTRYAG 1 cut(s) 1041
BstV1I GCAGC 3 cut(s) 713, 778, 1071
BstV2I GAAGAC 1 cut(s) 609
BstX2I RGATCY 1 cut(s) 101
BstYI RGATCY 1 cut(s) 101
BstZI CGGCCG 1 cut(s) 493
BsuRI GGCC 1 cut(s) 495
BtgI CCRYGG 2 cut(s) 46, 496
BtgZI GCGATG 1 cut(s) 974
BtrI CACGTC 1 cut(s) 395
BtsCI GGATG 2 cut(s) 757, 1035
BtsIMutI CAGTG 1 cut(s) 603
Cac8I GCNNGC 6 cut(s) 186, 446, 533, 699, 855, 906
Cfr13I GGNCC 2 cut(s) 43, 1150
Csp6I GTAC 4 cut(s) 38, 399, 812, 1116
CviAII CATG 8 cut(s) 47, 185, 278, 455, 532, 632, 1070, 1274
CviQI GTAC 4 cut(s) 38, 399, 812, 1116
DdeI CTNAG 7 cut(s) 14, 180, 239, 693, 747, 795, 1200
DpnI GATC 7 cut(s) 103, 287, 388, 414, 625, 1047, 1235
DpnII GATC 7 cut(s) 101, 285, 386, 412, 623, 1045, 1233
DriI GACNNNNNGTC 1 cut(s) 49
EaeI YGGCCR 1 cut(s) 493
EagI CGGCCG 1 cut(s) 493
Eam1104I CTCTTC 2 cut(s) 74, 238
Eam1105I GACNNNNNGTC 1 cut(s) 49
EarI CTCTTC 2 cut(s) 74, 238
Ecl136II GAGCTC 1 cut(s) 716
EclXI CGGCCG 1 cut(s) 493
Eco130I CCWWGG 2 cut(s) 46, 804
Eco24I GRGCYC 1 cut(s) 718
Eco31I GGTCTC 2 cut(s) 57, 444
Eco47I GGWCC 2 cut(s) 43, 1150
Eco52I CGGCCG 1 cut(s) 493
Eco53kI GAGCTC 1 cut(s) 716
Eco57I CTGAAG 2 cut(s) 270, 879
Eco88I CYCGRG 1 cut(s) 111
Eco91I GGTNACC 1 cut(s) 192
EcoICRI GAGCTC 1 cut(s) 716
EcoO65I GGTNACC 1 cut(s) 192
EcoRI GAATTC 1 cut(s) 1279
EcoRII CCWGG 1 cut(s) 265
EcoT14I CCWWGG 2 cut(s) 46, 804
EcoT38I GRGCYC 1 cut(s) 718
ErhI CCWWGG 2 cut(s) 46, 804
FaeI CATG 8 cut(s) 50, 188, 281, 458, 535, 635, 1073, 1277
FaqI GGGAC 1 cut(s) 109
FatI CATG 8 cut(s) 46, 184, 277, 454, 531, 631, 1069, 1273
Fnu4HI GCNGC 4 cut(s) 702, 792, 938, 1060
FokI GGATG 2 cut(s) 764, 1022
FriOI GRGCYC 1 cut(s) 718
Fsp4HI GCNGC 4 cut(s) 702, 792, 938, 1060
FspBI CTAG 1 cut(s) 75
GluI GCNGC 4 cut(s) 702, 792, 938, 1060
GsuI CTGGAG 1 cut(s) 18
HaeIII GGCC 1 cut(s) 495
HapII CCGG 2 cut(s) 226, 1087
Hin1I GRCGYC 1 cut(s) 7
Hin1II CATG 8 cut(s) 50, 188, 281, 458, 535, 635, 1073, 1277
HindIII AAGCTT 1 cut(s) 851
HinfI GANTC 6 cut(s) 23, 67, 82, 734, 770, 873
HpaII CCGG 2 cut(s) 226, 1087
HphI GGTGA 5 cut(s) 186, 473, 681, 971, 1040
Hpy188I TCNGA 4 cut(s) 319, 412, 553, 1157
Hpy188III TCNNGA 9 cut(s) 113, 384, 390, 621, 627, 719, 738, 846, 968
HpyAV CCTTC 6 cut(s) 228, 302, 351, 579, 781, 1017
HpyCH4III ACNGT 2 cut(s) 422, 928
HpyCH4IV ACGT 1 cut(s) 394
HpyCH4V TGCA 5 cut(s) 188, 535, 1059, 1190, 1273
HpyF10VI GCNNNNNNNGC 2 cut(s) 800, 1251
HpyF3I CTNAG 7 cut(s) 14, 180, 239, 693, 747, 795, 1200
HpySE526I ACGT 1 cut(s) 394
Hsp92I GRCGYC 1 cut(s) 7
Hsp92II CATG 8 cut(s) 50, 188, 281, 458, 535, 635, 1073, 1277
Kzo9I GATC 7 cut(s) 101, 285, 386, 412, 623, 1045, 1233
LguI GCTCTTC 1 cut(s) 238
LmnI GCTCC 1 cut(s) 1102
Lsp1109I GCAGC 3 cut(s) 713, 778, 1071
MaeI CTAG 1 cut(s) 75
MaeII ACGT 1 cut(s) 394
MaeIII GTNAC 3 cut(s) 192, 484, 1001
MalI GATC 7 cut(s) 103, 287, 388, 414, 625, 1047, 1235
MboI GATC 7 cut(s) 101, 285, 386, 412, 623, 1045, 1233
MboII GAAGA 6 cut(s) 91, 255, 372, 513, 609, 872
MfeI CAATTG 1 cut(s) 1191
MflI RGATCY 1 cut(s) 101
MhlI GDGCHC 1 cut(s) 718
MluCI AATT 4 cut(s) 1082, 1191, 1238, 1279
MlyI GAGTC 3 cut(s) 76, 91, 743
MroXI GAANNNNTTC 1 cut(s) 685
MseI TTAA 2 cut(s) 981, 1179
MslI CAYNNNNRTG 1 cut(s) 459
MspCI CTTAAG 1 cut(s) 980
MspI CCGG 2 cut(s) 226, 1087
MspR9I CCNGG 2 cut(s) 226, 267
MunI CAATTG 1 cut(s) 1191
MvaI CCWGG 1 cut(s) 267
MwoI GCNNNNNNNGC 2 cut(s) 800, 1251
NciI CCSGG 1 cut(s) 226
NcoI CCATGG 1 cut(s) 46
NdeII GATC 7 cut(s) 101, 285, 386, 412, 623, 1045, 1233
NlaIII CATG 8 cut(s) 50, 188, 281, 458, 535, 635, 1073, 1277
NlaIV GGNNCC 1 cut(s) 729
NmuCI GTSAC 1 cut(s) 192
NspI RCATGY 4 cut(s) 188, 458, 535, 1073
PaeI GCATGC 2 cut(s) 188, 535
PaeR7I CTCGAG 1 cut(s) 111
PciSI GCTCTTC 1 cut(s) 238
PcsI WCGNNNNNNNCGW 1 cut(s) 906
PdmI GAANNNNTTC 1 cut(s) 685
PfeI GAWTC 3 cut(s) 23, 770, 873
PflMI CCANNNNNTGG 1 cut(s) 656
PkrI GCNGC 4 cut(s) 703, 793, 939, 1061
PleI GAGTC 3 cut(s) 75, 90, 742
PpsI GAGTC 3 cut(s) 75, 90, 742
Psp124BI GAGCTC 1 cut(s) 718
Psp6I CCWGG 1 cut(s) 265
PspEI GGTNACC 1 cut(s) 192
PspGI CCWGG 1 cut(s) 265
PspN4I GGNNCC 1 cut(s) 729
PspPI GGNCC 2 cut(s) 43, 1150
PsuI RGATCY 1 cut(s) 101
RsaI GTAC 4 cut(s) 39, 400, 813, 1117
RsaNI GTAC 4 cut(s) 38, 399, 812, 1116
RseI CAYNNNNRTG 1 cut(s) 459
SacI GAGCTC 1 cut(s) 718
SapI GCTCTTC 1 cut(s) 238
SaqAI TTAA 2 cut(s) 981, 1179
SatI GCNGC 4 cut(s) 702, 792, 938, 1060
Sau3AI GATC 7 cut(s) 101, 285, 386, 412, 623, 1045, 1233
Sau96I GGNCC 2 cut(s) 43, 1150
SchI GAGTC 3 cut(s) 76, 91, 743
ScrFI CCNGG 2 cut(s) 226, 267
SduI GDGCHC 1 cut(s) 718
SfcI CTRYAG 1 cut(s) 1041
Sfr274I CTCGAG 1 cut(s) 111
SinI GGWCC 2 cut(s) 43, 1150
SlaI CTCGAG 1 cut(s) 111
SmiMI CAYNNNNRTG 1 cut(s) 459
SmlI CTYRAG 2 cut(s) 111, 980
SmoI CTYRAG 2 cut(s) 111, 980
SphI GCATGC 2 cut(s) 188, 535
Sse9I AATT 4 cut(s) 1082, 1191, 1238, 1279
SsiI CCGC 1 cut(s) 937
SspMI CTAG 1 cut(s) 75
SstI GAGCTC 1 cut(s) 718
StyD4I CCNGG 2 cut(s) 224, 265
StyI CCWWGG 2 cut(s) 46, 804
TaaI ACNGT 2 cut(s) 422, 928
TaiI ACGT 1 cut(s) 397
TaqI TCGA 2 cut(s) 112, 415
TasI AATT 4 cut(s) 1082, 1191, 1238, 1279
TatI WGTACW 2 cut(s) 37, 811
TauI GCSGC 1 cut(s) 940
TfiI GAWTC 3 cut(s) 23, 770, 873
Tru1I TTAA 2 cut(s) 981, 1179
Tru9I TTAA 2 cut(s) 981, 1179
TscAI CASTG 1 cut(s) 610
TseFI GTSAC 1 cut(s) 192
TseI GCWGC 3 cut(s) 701, 791, 1059
Tsp45I GTSAC 1 cut(s) 192
TspDTI ATGAA 5 cut(s) 294, 800, 987, 1197, 1227
TspRI CASTG 1 cut(s) 610
Van91I CCANNNNNTGG 1 cut(s) 656
Vha464I CTTAAG 1 cut(s) 980
VpaK11BI GGWCC 2 cut(s) 43, 1150
XapI RAATTY 2 cut(s) 1238, 1279
XceI RCATGY 4 cut(s) 188, 458, 535, 1073
XhoI CTCGAG 1 cut(s) 111
XmnI GAANNNNTTC 1 cut(s) 685
XspI CTAG 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.