Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0002746

Physical Location & Seq

Genomic Coordinates Forward (+)

20302438 .. 20308400

Gene Structure 5963 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG121300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1395 bp

ATGACTGCTAAGTCTTTACAAGCTAGTCAGTTTGTTTCTCACGTTATGTTTGTCAGGAGAAGGCTGCATGGGCATTTGAAAAGTTCCATGATGGGGCGTAATCTAAAAAATCATTCCGAATCTCCAGTACGTGACCATGGATCTCCTCCTAGAAGGAGCCCTTATAGGAAGAGTCAATCTCGAACAGAAAGATCACCTAATCAACATAGAAAGTCCCAGAGAGGCAGTTCTCCCGTTAGAGAGAAGCATTCAAGTTGCCCCAAGTCTCCCAAGCATGCAAGGTCGCCCACTCCTCCTCCTTGCTCTCCTTCTCGCACCAAATGGTTAAGAAGAGCTCAAGCTCGAAGAGTGCCTGAGAGAGAACATGAAAGGAAGAATGGTAGGGGAATCGGTAGGGATTTACAGGAGGGGGGTCCAGAGAGAGAAGTTGGGAGTGATAGAAATGAGAAATTGTCGGGAAGGGATCATACCGATGGTAAATCTTCAAGATCAAGGCATGTTACCTCTCCATCAGATCGACACCGGAGGAGTAGGCATAGATCTCCCTCACCTCAACATCCTGATGAAACAAAATATGGAGATAAAGTAATTGAGGGCCATGAAAGAAATCATCACAGAGGGAGTGATAGAAGTATGCAAAGGGAAAAGGGCTCAGATAGGGAAAATGAGACTGAAGGAATGGAGAGAGGGACAGAAAAAGACAGTTCTGGTCATAGGTCTTCAAGATCGAGACATGGGGAGTCTACTTCACCATTGAATGGACACCAGAAGAAAAAACACAAAACTCAGTCGCCTCGACAAGCTGCAGATACCAGAGCTCACTATGAGGTACCAGAGTCAAGGGAAGCTGAGCATGGAATTGATAAGAATGATTCAGTAGCAATGATGAGAGCTGCTGAGGAGGCCTTGGAAGCACAGAAAAAGCAAAAACCTTCGTTTGAGCTATCTGGAAAGCTTGCTGCGGAAACCAATAGATTCAGGGGTATAACACTATTATACACTGAGCCAGCAGAAGGACGGCCACCTCGTGTAAAATGGCGGCTTTATGTTTTTAAGGGTGGTGAAGCTTTTAATGAACCCATTAAGATACATCGCCAAAGCTGTTACCTTTTCGGGAGGGAAAGAAGGGTGGCAGACATCCCTACGGATCACCCGTCCTGCAGCAAGCAACATGCTGTTCTACAATTCCGGCAAGTAGAAAAGGAGCAACCAGATGGTACATTGTCAAAGGAAGTCAAACCTTACGTAATGGATCTTGGAAGCACAAATAAAACTTTTGTCAATGAAACTGCAATTGAACCTCAGCGATATTATGAACTTATGGAAAAAGACACGATTAAATTTGGTAATAGTAGCCGAGAGTATGTTCTACTGCACGAGAATTCTATGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008283 GO:0009507 GO:0009536 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0019222 GO:0031047 GO:0031050 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0040008 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048519 GO:0048638 GO:0050789 GO:0050793 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

464

Amino Acids

53.3

Weight (kDa)

10.08

Isoelectric Point (pI)

66.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FHA	PF00498	369 - 449	1.2e-15	FHA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24410 AT3G20550
fragaria_vesca	FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_6g43590
malus_domestica	MD03G1208700.v1.1 MD06G1125500.v1.1 MD11G1223400.v1.1
prunus_persica	Prupe.4G208000_v2.0.a1
pyrus_communis	pycom06g11580 pycom11g19700
rosa_chinensis	RchiOBHm_Chr2g0160171 RchiOBHm_Chr4g0405041 RchiOBHm_Chr5g0037921
rosa_laevigata	RLG00000008882 RLG00000021201 RLG00000033823
rosa_multiflora	Rmu_sc0001744.1_g000004 Rmu_ssc0000241.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042940 Rroxscaffold_5G00349230
rosa_rugosa	Rorug04G0052500 Rorug05G0169400 Rorug05G0169500 Rorug05G0169600
rosa_samantha	Rh2BG560700 Rh4AG127600 Rh4BG121300 Rh4CG135400 Rh4DG121700 Rh5AG257700 Rh5BG260500 Rh5CG293100
rosa_wichuraiana	Rw2G045270 Rw4G010330 Rw5G023890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	10
Acc65I	GGTACC	1 cut(s)	829
AccB1I	GGYRCC	1 cut(s)	829
AccB7I	CCANNNNNTGG	1 cut(s)	758
AccI	GTMKAC	1 cut(s)	743
AciI	CCGC	2 cut(s)	962, 1039
AclWI	GGATC	4 cut(s)	148, 471, 1155, 1260
AcoI	YGGCCR	1 cut(s)	1019
AcsI	RAATTY	2 cut(s)	1340, 1381
AcuI	CTGAAG	1 cut(s)	693
AdeI	CACNNNGTG	1 cut(s)	1028
AfaI	GTAC	3 cut(s)	129, 831, 1219
AfiI	CCNNNNNNNGG	3 cut(s)	93, 758, 1013
AgsI	TTSAA	6 cut(s)	79, 252, 486, 723, 757, 1298
Alw21I	GWGCWC	2 cut(s)	337, 820
Alw26I	GTCTC	3 cut(s)	270, 662, 724
AlwI	GGATC	4 cut(s)	148, 471, 1155, 1260
AoxI	GGCC	3 cut(s)	595, 903, 1019
ApeKI	GCWGC	5 cut(s)	64, 803, 893, 959, 1161
ApoI	RAATTY	2 cut(s)	1340, 1381
Asp718I	GGTACC	1 cut(s)	829
AspS9I	GGNCC	2 cut(s)	413, 595
AsuHPI	GGTGA	5 cut(s)	186, 540, 741, 1073, 1142
AvaII	GGWCC	1 cut(s)	413
BaeI	ACNNNNGTAYC	2 cut(s)	821, 854
BanI	GGYRCC	1 cut(s)	829
BanII	GRGCYC	4 cut(s)	161, 337, 653, 820
BarI	GAAGNNNNNNTAC	2 cut(s)	451, 483
BauI	CACGAG	2 cut(s)	1026, 1376
BbsI	GAAGAC	1 cut(s)	711
Bbv12I	GWGCWC	2 cut(s)	337, 820
BbvCI	CCTCAGC	2 cut(s)	897, 1302
BbvI	GCAGC	5 cut(s)	51, 790, 880, 946, 1173
BccI	CCATC	4 cut(s)	85, 467, 517, 1208
BceAI	ACGGC	1 cut(s)	1034
BcoDI	GTCTC	3 cut(s)	270, 662, 724
BfaI	CTAG	2 cut(s)	24, 150
BfmI	CTRYAG	2 cut(s)	804, 1159
BglII	AGATCT	1 cut(s)	539
BisI	GCNGC	6 cut(s)	65, 804, 894, 960, 1040, 1162
BlpI	GCTNAGC	1 cut(s)	849
BlsI	GCNGC	6 cut(s)	66, 805, 895, 961, 1041, 1163
Bme18I	GGWCC	1 cut(s)	413
BmgT120I	GGNCC	2 cut(s)	413, 595
BmiI	GGNNCC	3 cut(s)	158, 414, 831
BpiI	GAAGAC	1 cut(s)	711
BplI	GAGNNNNNCTC	2 cut(s)	163, 195
BpmI	CTGGAG	1 cut(s)	108
Bpu10I	CCTNAGC	2 cut(s)	897, 1302
Bpu1102I	GCTNAGC	1 cut(s)	849
BpuEI	CTTGAG	1 cut(s)	321
BsaAI	YACGTR	2 cut(s)	131, 1246
BsaJI	CCNNGG	2 cut(s)	136, 906
BsaWI	WCCGGW	1 cut(s)	522
BsaXI	ACNNNNNCTCC	4 cut(s)	280, 310, 570, 600
Bsc4I	CCNNNNNNNGG	3 cut(s)	93, 758, 1013
Bse1I	ACTGG	1 cut(s)	125
Bse3DI	GCAATG	1 cut(s)	888
BseDI	CCNNGG	2 cut(s)	136, 906
BseGI	GGATG	2 cut(s)	556, 1137
BseLI	CCNNNNNNNGG	3 cut(s)	93, 758, 1013
BseMI	GCAATG	1 cut(s)	888
BseMII	CTCAG	7 cut(s)	345, 666, 800, 840, 888, 993, 1316
BseNI	ACTGG	1 cut(s)	125
BseRI	GAGGAG	5 cut(s)	135, 282, 285, 541, 914
BseXI	GCAGC	5 cut(s)	51, 790, 880, 946, 1173
BsgI	GTGCAG	1 cut(s)	1358
BshFI	GGCC	3 cut(s)	597, 905, 1021
BshNI	GGYRCC	1 cut(s)	829
BsiHKAI	GWGCWC	2 cut(s)	337, 820
BsiSI	CCGG	2 cut(s)	523, 1189
BslFI	GGGAC	2 cut(s)	199, 703
BslI	CCNNNNNNNGG	3 cut(s)	93, 758, 1013
BsmAI	GTCTC	3 cut(s)	270, 662, 724
BsmFI	GGGAC	2 cut(s)	199, 703
BsmI	GAATGC	1 cut(s)	247
BsnI	GGCC	3 cut(s)	597, 905, 1021
Bsp1286I	GDGCHC	4 cut(s)	161, 337, 653, 820
Bsp143I	GATC	9 cut(s)	140, 191, 463, 488, 514, 539, 725, 1147, 1252
Bsp1720I	GCTNAGC	1 cut(s)	849
Bsp19I	CCATGG	1 cut(s)	136
BspACI	CCGC	2 cut(s)	962, 1039
BspANI	GGCC	3 cut(s)	597, 905, 1021
BspCNI	CTCAG	7 cut(s)	346, 665, 799, 841, 889, 994, 1315
BspLI	GGNNCC	3 cut(s)	158, 414, 831
BspMAI	CTGCAG	2 cut(s)	808, 1163
BspPI	GGATC	4 cut(s)	148, 471, 1155, 1260
BspQI	GCTCTTC	1 cut(s)	325
BspT107I	GGYRCC	1 cut(s)	829
BsrDI	GCAATG	1 cut(s)	888
BsrI	ACTGG	1 cut(s)	125
BssECI	CCNNGG	2 cut(s)	136, 906
BssMI	GATC	9 cut(s)	140, 191, 463, 488, 514, 539, 725, 1147, 1252
BssSI	CACGAG	2 cut(s)	1026, 1376
BssT1I	CCWWGG	2 cut(s)	136, 906
Bst2BI	CACGAG	2 cut(s)	1026, 1376
Bst4CI	ACNGT	1 cut(s)	704
Bst6I	CTCTTC	3 cut(s)	164, 325, 340
BstBAI	YACGTR	2 cut(s)	131, 1246
BstC8I	GCNNGC	4 cut(s)	276, 957, 1008, 1166
BstDEI	CTNAG	8 cut(s)	9, 354, 652, 786, 849, 897, 1002, 1302
BstDSI	CCRYGG	1 cut(s)	136
BstF5I	GGATG	2 cut(s)	556, 1137
BstKTI	GATC	9 cut(s)	143, 194, 466, 491, 517, 542, 728, 1150, 1255
BstMAI	GTCTC	3 cut(s)	270, 662, 724
BstMBI	GATC	9 cut(s)	140, 191, 463, 488, 514, 539, 725, 1147, 1252
BstMWI	GCNNNNNNNGC	3 cut(s)	70, 902, 911
BstNSI	RCATGY	3 cut(s)	278, 500, 1175
BstSFI	CTRYAG	2 cut(s)	804, 1159
BstSNI	TACGTA	1 cut(s)	1246
BstV1I	GCAGC	5 cut(s)	51, 790, 880, 946, 1173
BstV2I	GAAGAC	1 cut(s)	711
BstX2I	RGATCY	3 cut(s)	140, 539, 1252
BstYI	RGATCY	3 cut(s)	140, 539, 1252
BsuRI	GGCC	3 cut(s)	597, 905, 1021
BtgI	CCRYGG	1 cut(s)	136
BtgZI	GCGATG	1 cut(s)	1076
BtsCI	GGATG	2 cut(s)	556, 1137
BtsIMutI	CAGTG	1 cut(s)	999
Cac8I	GCNNGC	4 cut(s)	276, 957, 1008, 1166
Cfr13I	GGNCC	2 cut(s)	413, 595
Csp6I	GTAC	3 cut(s)	128, 830, 1218
CviQI	GTAC	3 cut(s)	128, 830, 1218
DdeI	CTNAG	8 cut(s)	9, 354, 652, 786, 849, 897, 1002, 1302
DpnI	GATC	9 cut(s)	142, 193, 465, 490, 516, 541, 727, 1149, 1254
DpnII	GATC	9 cut(s)	140, 191, 463, 488, 514, 539, 725, 1147, 1252
DraIII	CACNNNGTG	1 cut(s)	1028
DrdI	GACNNNNNNGTC	1 cut(s)	10
DseDI	GACNNNNNNGTC	1 cut(s)	10
EaeI	YGGCCR	1 cut(s)	1019
Eam1104I	CTCTTC	3 cut(s)	164, 325, 340
EarI	CTCTTC	3 cut(s)	164, 325, 340
Ecl136II	GAGCTC	2 cut(s)	335, 818
Eco105I	TACGTA	1 cut(s)	1246
Eco130I	CCWWGG	2 cut(s)	136, 906
Eco147I	AGGCCT	1 cut(s)	905
Eco24I	GRGCYC	4 cut(s)	161, 337, 653, 820
Eco47I	GGWCC	1 cut(s)	413
Eco53kI	GAGCTC	2 cut(s)	335, 818
Eco57I	CTGAAG	1 cut(s)	693
EcoICRI	GAGCTC	2 cut(s)	335, 818
EcoRI	GAATTC	1 cut(s)	1381
EcoT14I	CCWWGG	2 cut(s)	136, 906
EcoT38I	GRGCYC	4 cut(s)	161, 337, 653, 820
ErhI	CCWWGG	2 cut(s)	136, 906
FalI	AAGNNNNNCTT	2 cut(s)	145, 177
FaqI	GGGAC	2 cut(s)	199, 703
FblI	GTMKAC	1 cut(s)	743
Fnu4HI	GCNGC	6 cut(s)	65, 804, 894, 960, 1040, 1162
FokI	GGATG	2 cut(s)	543, 1124
FriOI	GRGCYC	4 cut(s)	161, 337, 653, 820
Fsp4HI	GCNGC	6 cut(s)	65, 804, 894, 960, 1040, 1162
FspBI	CTAG	2 cut(s)	24, 150
GluI	GCNGC	6 cut(s)	65, 804, 894, 960, 1040, 1162
GsuI	CTGGAG	1 cut(s)	108
HaeIII	GGCC	3 cut(s)	597, 905, 1021
HapII	CCGG	2 cut(s)	523, 1189
HindIII	AAGCTT	2 cut(s)	953, 1065
HinfI	GANTC	7 cut(s)	119, 172, 387, 740, 836, 872, 975
HpaII	CCGG	2 cut(s)	523, 1189
HphI	GGTGA	5 cut(s)	186, 540, 741, 1073, 1142
Hpy166II	GTNNAC	1 cut(s)	744
Hpy188I	TCNGA	3 cut(s)	118, 514, 655
Hpy8I	GTNNAC	1 cut(s)	744
HpyAV	CCTTC	8 cut(s)	54, 147, 318, 453, 668, 942, 1007, 1119
HpyCH4III	ACNGT	1 cut(s)	704
HpyCH4IV	ACGT	3 cut(s)	42, 130, 1245
HpyCH4V	TGCA	7 cut(s)	67, 278, 637, 806, 1161, 1292, 1375
HpyF10VI	GCNNNNNNNGC	3 cut(s)	70, 902, 911
HpyF3I	CTNAG	8 cut(s)	9, 354, 652, 786, 849, 897, 1002, 1302
HpySE526I	ACGT	3 cut(s)	42, 130, 1245
KpnI	GGTACC	1 cut(s)	833
Kzo9I	GATC	9 cut(s)	140, 191, 463, 488, 514, 539, 725, 1147, 1252
LguI	GCTCTTC	1 cut(s)	325
LmnI	GCTCC	2 cut(s)	156, 1204
Lsp1109I	GCAGC	5 cut(s)	51, 790, 880, 946, 1173
MaeI	CTAG	2 cut(s)	24, 150
MaeII	ACGT	3 cut(s)	42, 130, 1245
MaeIII	GTNAC	3 cut(s)	131, 499, 1103
MalI	GATC	9 cut(s)	142, 193, 465, 490, 516, 541, 727, 1149, 1254
MboI	GATC	9 cut(s)	140, 191, 463, 488, 514, 539, 725, 1147, 1252
MboII	GAAGA	7 cut(s)	181, 342, 357, 385, 474, 711, 781
MfeI	CAATTG	1 cut(s)	1293
MflI	RGATCY	3 cut(s)	140, 539, 1252
MhlI	GDGCHC	4 cut(s)	161, 337, 653, 820
MluCI	AATT	7 cut(s)	449, 588, 858, 1184, 1293, 1340, 1381
MlyI	GAGTC	3 cut(s)	181, 749, 845
MseI	TTAA	5 cut(s)	326, 1053, 1071, 1083, 1338
MslI	CAYNNNNRTG	2 cut(s)	471, 561
MspI	CCGG	2 cut(s)	523, 1189
MunI	CAATTG	1 cut(s)	1293
Mva1269I	GAATGC	1 cut(s)	247
MwoI	GCNNNNNNNGC	3 cut(s)	70, 902, 911
NcoI	CCATGG	1 cut(s)	136
NdeII	GATC	9 cut(s)	140, 191, 463, 488, 514, 539, 725, 1147, 1252
NlaIV	GGNNCC	3 cut(s)	158, 414, 831
NmeAIII	GCCGAG	1 cut(s)	1382
NmuCI	GTSAC	1 cut(s)	131
NspI	RCATGY	3 cut(s)	278, 500, 1175
PaeI	GCATGC	1 cut(s)	278
PceI	AGGCCT	1 cut(s)	905
PciSI	GCTCTTC	1 cut(s)	325
PcsI	WCGNNNNNNNCGW	2 cut(s)	1024, 1151
PctI	GAATGC	1 cut(s)	247
PfeI	GAWTC	4 cut(s)	119, 387, 872, 975
PflMI	CCANNNNNTGG	1 cut(s)	758
PkrI	GCNGC	6 cut(s)	66, 805, 895, 961, 1041, 1163
PleI	GAGTC	3 cut(s)	180, 748, 844
PpsI	GAGTC	3 cut(s)	180, 748, 844
Ppu21I	YACGTR	2 cut(s)	131, 1246
Psp124BI	GAGCTC	2 cut(s)	337, 820
PspN4I	GGNNCC	3 cut(s)	158, 414, 831
PspPI	GGNCC	2 cut(s)	413, 595
PstI	CTGCAG	2 cut(s)	808, 1163
PsuI	RGATCY	3 cut(s)	140, 539, 1252
RsaI	GTAC	3 cut(s)	129, 831, 1219
RsaNI	GTAC	3 cut(s)	128, 830, 1218
RseI	CAYNNNNRTG	2 cut(s)	471, 561
SacI	GAGCTC	2 cut(s)	337, 820
SapI	GCTCTTC	1 cut(s)	325
SaqAI	TTAA	5 cut(s)	326, 1053, 1071, 1083, 1338
SatI	GCNGC	6 cut(s)	65, 804, 894, 960, 1040, 1162
Sau3AI	GATC	9 cut(s)	140, 191, 463, 488, 514, 539, 725, 1147, 1252
Sau96I	GGNCC	2 cut(s)	413, 595
SchI	GAGTC	3 cut(s)	181, 749, 845
SduI	GDGCHC	4 cut(s)	161, 337, 653, 820
SfcI	CTRYAG	2 cut(s)	804, 1159
SinI	GGWCC	1 cut(s)	413
SmiMI	CAYNNNNRTG	2 cut(s)	471, 561
SmlI	CTYRAG	1 cut(s)	336
SmoI	CTYRAG	1 cut(s)	336
SnaBI	TACGTA	1 cut(s)	1246
SphI	GCATGC	1 cut(s)	278
Sse9I	AATT	7 cut(s)	449, 588, 858, 1184, 1293, 1340, 1381
SseBI	AGGCCT	1 cut(s)	905
SsiI	CCGC	2 cut(s)	962, 1039
SspMI	CTAG	2 cut(s)	24, 150
SstI	GAGCTC	2 cut(s)	337, 820
StuI	AGGCCT	1 cut(s)	905
StyI	CCWWGG	2 cut(s)	136, 906
TaaI	ACNGT	1 cut(s)	704
TaiI	ACGT	3 cut(s)	45, 133, 1248
TaqI	TCGA	5 cut(s)	181, 343, 517, 728, 796
TasI	AATT	7 cut(s)	449, 588, 858, 1184, 1293, 1340, 1381
TauI	GCSGC	1 cut(s)	1042
TfiI	GAWTC	4 cut(s)	119, 387, 872, 975
Tru1I	TTAA	5 cut(s)	326, 1053, 1071, 1083, 1338
Tru9I	TTAA	5 cut(s)	326, 1053, 1071, 1083, 1338
TscAI	CASTG	1 cut(s)	1006
TseFI	GTSAC	1 cut(s)	131
TseI	GCWGC	5 cut(s)	64, 803, 893, 959, 1161
Tsp45I	GTSAC	1 cut(s)	131
TspDTI	ATGAA	6 cut(s)	381, 579, 615, 1089, 1299, 1329
TspGWI	ACGGA	1 cut(s)	1160
TspRI	CASTG	1 cut(s)	1006
Van91I	CCANNNNNTGG	1 cut(s)	758
VpaK11BI	GGWCC	1 cut(s)	413
XapI	RAATTY	2 cut(s)	1340, 1381
XceI	RCATGY	3 cut(s)	278, 500, 1175
XmiI	GTMKAC	1 cut(s)	743
XspI	CTAG	2 cut(s)	24, 150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.