Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002746

Physical Location & Seq

Genomic Coordinates Reverse (-)

33699009 .. 33699713

Gene Structure 705 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g43590.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGAAGATCTTCAGGTATGCAACTACAACCGCGCAGAAAGAGACTTGTACCATTTACCGGGTCCGATCCCAGGCCCATTTAATTTATGGGCCTGAGCCCAACATACAATATACAGCCCAATTAAGCCCAATAACCACCGACGTGTTATTCTATAAATTCTACTACGCAGAAAGTTGGTCGTCCATACAAATATCTAGAGGTTGTGTTATGGAGGCTTTGGAAGCACAAGAAAAGCAGAAACCTACGTTTGAGCTATCTGGGAAACTTGCCGCAGAAGCCAATAGATTCAATGGTATAACGCTGTTATATTCGGAGCCGGCCGAAGGACGACGGCCTCATGTGAAGTGGCGGCTTTATGTTTTCAGGGGTGGTGAAGAGGTTAACATACCCGTTGAGATATACAGGAAGAGCTGTTATCTTTTCGGGAGGGAAAGGAGGGTCGCGGACGTCCCTATAGATCACCCTTCCTGCAGCAAGCAACATGCCGTTATACAATTTCGACAAGCAGAAGAGGAGGGAGCTGATGGTACATTGTTGAAGGAAGTAAAGCCTTACATCGTGGATCTTGGAAGCACAAATAAGACTTTTGTTAATGGTGTCGCAGTTGAACCTCAGCGATATTATGAACTTGTGGAGAAAGATACGATCAGGTTTGGTAATAGTAGCCGAGAGTATGTGATTCTGCACGAGAATTCTGTAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008283 GO:0009507 GO:0009536 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0019222 GO:0031047 GO:0031050 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0040008 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048519 GO:0048638 GO:0050789 GO:0050793 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

235

Amino Acids

26.94

Weight (kDa)

6.97

Isoelectric Point (pI)

43.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FHA	PF00498	139 - 219	9.4e-18	FHA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24410 AT3G20550
fragaria_vesca	FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_6g43590
malus_domestica	MD03G1208700.v1.1 MD06G1125500.v1.1 MD11G1223400.v1.1
prunus_persica	Prupe.4G208000_v2.0.a1
pyrus_communis	pycom06g11580 pycom11g19700
rosa_chinensis	RchiOBHm_Chr2g0160171 RchiOBHm_Chr4g0405041 RchiOBHm_Chr5g0037921
rosa_laevigata	RLG00000008882 RLG00000021201 RLG00000033823
rosa_multiflora	Rmu_sc0001744.1_g000004 Rmu_ssc0000241.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042940 Rroxscaffold_5G00349230
rosa_rugosa	Rorug04G0052500 Rorug05G0169400 Rorug05G0169500 Rorug05G0169600
rosa_samantha	Rh2BG560700 Rh4AG127600 Rh4BG121300 Rh4CG135400 Rh4DG121700 Rh5AG257700 Rh5BG260500 Rh5CG293100
rosa_wichuraiana	Rw2G045270 Rw4G010330 Rw5G023890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	450
AccII	CGCG	2 cut(s)	32, 443
AciI	CCGC	4 cut(s)	30, 270, 349, 443
AclWI	GGATC	2 cut(s)	60, 570
AcoI	YGGCCR	1 cut(s)	318
AcsI	RAATTY	2 cut(s)	155, 691
AcyI	GRCGYC	1 cut(s)	447
AfaI	GTAC	2 cut(s)	49, 529
AfiI	CCNNNNNNNGG	3 cut(s)	57, 70, 323
AflIII	ACRYGT	1 cut(s)	141
AgsI	TTSAA	3 cut(s)	289, 538, 608
AjiI	CACGTC	1 cut(s)	142
AjnI	CCWGG	1 cut(s)	69
AleI	CACNNNNGTG	1 cut(s)	140
AluBI	AGCT	3 cut(s)	253, 411, 521
AluI	AGCT	3 cut(s)	253, 411, 521
Alw26I	GTCTC	1 cut(s)	35
AlwI	GGATC	2 cut(s)	60, 570
AoxI	GGCC	4 cut(s)	72, 89, 318, 332
ApeKI	GCWGC	1 cut(s)	471
ApoI	RAATTY	2 cut(s)	155, 691
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	1 cut(s)	34
AspS9I	GGNCC	3 cut(s)	61, 73, 89
AsuC2I	CCSGG	1 cut(s)	59
AsuHPI	GGTGA	2 cut(s)	383, 452
AvaII	GGWCC	1 cut(s)	61
BanII	GRGCYC	1 cut(s)	99
BauI	CACGAG	1 cut(s)	686
BbvCI	CCTCAGC	1 cut(s)	612
BbvI	GCAGC	1 cut(s)	483
BccI	CCATC	1 cut(s)	518
BceAI	ACGGC	2 cut(s)	347, 470
BciT130I	CCWGG	1 cut(s)	71
BcnI	CCSGG	1 cut(s)	59
BcoDI	GTCTC	1 cut(s)	35
BfaI	CTAG	1 cut(s)	195
BfmI	CTRYAG	3 cut(s)	453, 469, 696
BglII	AGATCT	1 cut(s)	6
BisI	GCNGC	3 cut(s)	270, 350, 472
BlsI	GCNGC	3 cut(s)	271, 351, 473
Bme1390I	CCNGG	2 cut(s)	59, 71
Bme18I	GGWCC	1 cut(s)	61
BmgBI	CACGTC	1 cut(s)	142
BmgT120I	GGNCC	3 cut(s)	61, 73, 89
BmiI	GGNNCC	2 cut(s)	62, 315
BmrFI	CCNGG	2 cut(s)	59, 71
Bpu10I	CCTNAGC	2 cut(s)	93, 612
BpuMI	CCSGG	1 cut(s)	59
BsaHI	GRCGYC	1 cut(s)	447
BsaJI	CCNNGG	1 cut(s)	69
Bsc4I	CCNNNNNNNGG	3 cut(s)	57, 70, 323
Bse118I	RCCGGY	1 cut(s)	316
BseBI	CCWGG	1 cut(s)	71
BseDI	CCNNGG	1 cut(s)	69
BseLI	CCNNNNNNNGG	3 cut(s)	57, 70, 323
BseMII	CTCAG	2 cut(s)	84, 626
BseRI	GAGGAG	1 cut(s)	527
BseX3I	CGGCCG	1 cut(s)	318
BseXI	GCAGC	1 cut(s)	483
BsgI	GTGCAG	1 cut(s)	668
Bsh1236I	CGCG	2 cut(s)	32, 443
Bsh1285I	CGRYCG	1 cut(s)	321
BshFI	GGCC	4 cut(s)	74, 91, 320, 334
BsiEI	CGRYCG	1 cut(s)	321
BsiSI	CCGG	2 cut(s)	58, 317
BslFI	GGGAC	1 cut(s)	434
BslI	CCNNNNNNNGG	3 cut(s)	57, 70, 323
BsmAI	GTCTC	1 cut(s)	35
BsmFI	GGGAC	1 cut(s)	434
BsnI	GGCC	4 cut(s)	74, 91, 320, 334
Bsp1286I	GDGCHC	1 cut(s)	99
Bsp143I	GATC	5 cut(s)	6, 65, 457, 562, 645
BspACI	CCGC	4 cut(s)	30, 270, 349, 443
BspANI	GGCC	4 cut(s)	74, 91, 320, 334
BspCNI	CTCAG	2 cut(s)	85, 625
BspFNI	CGCG	2 cut(s)	32, 443
BspLI	GGNNCC	2 cut(s)	62, 315
BspMAI	CTGCAG	1 cut(s)	473
BspPI	GGATC	2 cut(s)	60, 570
BspQI	GCTCTTC	1 cut(s)	401
BsrFI	RCCGGY	1 cut(s)	316
BssAI	RCCGGY	1 cut(s)	316
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	5 cut(s)	6, 65, 457, 562, 645
BssNI	GRCGYC	1 cut(s)	447
BssSI	CACGAG	1 cut(s)	686
Bst2BI	CACGAG	1 cut(s)	686
Bst2UI	CCWGG	1 cut(s)	71
Bst6I	CTCTTC	3 cut(s)	369, 401, 504
BstACI	GRCGYC	1 cut(s)	447
BstC8I	GCNNGC	2 cut(s)	318, 476
BstDEI	CTNAG	2 cut(s)	93, 612
BstFNI	CGCG	2 cut(s)	32, 443
BstHHI	GCGC	1 cut(s)	34
BstKTI	GATC	5 cut(s)	9, 68, 460, 565, 648
BstMAI	GTCTC	1 cut(s)	35
BstMBI	GATC	5 cut(s)	6, 65, 457, 562, 645
BstMCI	CGRYCG	1 cut(s)	321
BstMWI	GCNNNNNNNGC	2 cut(s)	221, 275
BstNI	CCWGG	1 cut(s)	71
BstNSI	RCATGY	1 cut(s)	485
BstSCI	CCNGG	2 cut(s)	57, 69
BstSFI	CTRYAG	3 cut(s)	453, 469, 696
BstUI	CGCG	2 cut(s)	32, 443
BstV1I	GCAGC	1 cut(s)	483
BstX2I	RGATCY	2 cut(s)	6, 562
BstYI	RGATCY	2 cut(s)	6, 562
BstZI	CGGCCG	1 cut(s)	318
BsuRI	GGCC	4 cut(s)	74, 91, 320, 334
BtrI	CACGTC	1 cut(s)	142
Cac8I	GCNNGC	2 cut(s)	318, 476
CfoI	GCGC	1 cut(s)	34
Cfr10I	RCCGGY	1 cut(s)	316
Cfr13I	GGNCC	3 cut(s)	61, 73, 89
Csp6I	GTAC	2 cut(s)	48, 528
CviAII	CATG	2 cut(s)	338, 482
CviQI	GTAC	2 cut(s)	48, 528
DdeI	CTNAG	2 cut(s)	93, 612
DpnI	GATC	5 cut(s)	8, 67, 459, 564, 647
DpnII	GATC	5 cut(s)	6, 65, 457, 562, 645
EaeI	YGGCCR	1 cut(s)	318
EagI	CGGCCG	1 cut(s)	318
Eam1104I	CTCTTC	3 cut(s)	369, 401, 504
EarI	CTCTTC	3 cut(s)	369, 401, 504
EclXI	CGGCCG	1 cut(s)	318
Eco24I	GRGCYC	1 cut(s)	99
Eco47I	GGWCC	1 cut(s)	61
Eco52I	CGGCCG	1 cut(s)	318
EcoRI	GAATTC	1 cut(s)	691
EcoRII	CCWGG	1 cut(s)	69
EcoT38I	GRGCYC	1 cut(s)	99
FaeI	CATG	2 cut(s)	341, 485
FaqI	GGGAC	1 cut(s)	434
FatI	CATG	2 cut(s)	337, 481
Fnu4HI	GCNGC	3 cut(s)	270, 350, 472
FriOI	GRGCYC	1 cut(s)	99
Fsp4HI	GCNGC	3 cut(s)	270, 350, 472
FspBI	CTAG	1 cut(s)	195
GlaI	GCGC	1 cut(s)	33
GluI	GCNGC	3 cut(s)	270, 350, 472
HaeIII	GGCC	4 cut(s)	74, 91, 320, 334
HapII	CCGG	2 cut(s)	58, 317
HhaI	GCGC	1 cut(s)	34
Hin1I	GRCGYC	1 cut(s)	447
Hin1II	CATG	2 cut(s)	341, 485
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HincII	GTYRAC	1 cut(s)	382
HindII	GTYRAC	1 cut(s)	382
HinfI	GANTC	2 cut(s)	285, 679
HpaI	GTTAAC	1 cut(s)	382
HpaII	CCGG	2 cut(s)	58, 317
HphI	GGTGA	2 cut(s)	383, 452
Hpy166II	GTNNAC	1 cut(s)	382
Hpy188I	TCNGA	2 cut(s)	65, 313
Hpy188III	TCNNGA	2 cut(s)	195, 424
Hpy8I	GTNNAC	1 cut(s)	382
Hpy99I	CGWCG	2 cut(s)	143, 333
HpyAV	CCTTC	3 cut(s)	317, 474, 532
HpyCH4IV	ACGT	3 cut(s)	141, 245, 447
HpyCH4V	TGCA	3 cut(s)	20, 471, 685
HpyF10VI	GCNNNNNNNGC	2 cut(s)	221, 275
HpyF3I	CTNAG	2 cut(s)	93, 612
HpySE526I	ACGT	3 cut(s)	141, 245, 447
Hsp92I	GRCGYC	1 cut(s)	447
Hsp92II	CATG	2 cut(s)	341, 485
HspAI	GCGC	1 cut(s)	32
KroI	GCCGGC	1 cut(s)	316
KroNI	GCCGGC	1 cut(s)	318
KspAI	GTTAAC	1 cut(s)	382
Kzo9I	GATC	5 cut(s)	6, 65, 457, 562, 645
LguI	GCTCTTC	1 cut(s)	401
LmnI	GCTCC	2 cut(s)	313, 518
Lsp1109I	GCAGC	1 cut(s)	483
MaeI	CTAG	1 cut(s)	195
MaeII	ACGT	3 cut(s)	141, 245, 447
MalI	GATC	5 cut(s)	8, 67, 459, 564, 647
MboI	GATC	5 cut(s)	6, 65, 457, 562, 645
MboII	GAAGA	4 cut(s)	16, 386, 418, 521
MflI	RGATCY	2 cut(s)	6, 562
MhlI	GDGCHC	1 cut(s)	99
MluCI	AATT	5 cut(s)	81, 119, 155, 494, 691
MnlI	CCTC	9 cut(s)	191, 205, 345, 370, 420, 429, 505, 508, 621
MroNI	GCCGGC	1 cut(s)	316
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	4 cut(s)	80, 122, 381, 591
MslI	CAYNNNNRTG	1 cut(s)	140
MspI	CCGG	2 cut(s)	58, 317
MspR9I	CCNGG	2 cut(s)	59, 71
MvaI	CCWGG	1 cut(s)	71
MvnI	CGCG	2 cut(s)	32, 443
MwoI	GCNNNNNNNGC	2 cut(s)	221, 275
NaeI	GCCGGC	1 cut(s)	318
NciI	CCSGG	1 cut(s)	59
NdeII	GATC	5 cut(s)	6, 65, 457, 562, 645
NgoMIV	GCCGGC	1 cut(s)	316
NlaIII	CATG	2 cut(s)	341, 485
NlaIV	GGNNCC	2 cut(s)	62, 315
NmeAIII	GCCGAG	1 cut(s)	692
NspI	RCATGY	1 cut(s)	485
OliI	CACNNNNGTG	1 cut(s)	140
PciSI	GCTCTTC	1 cut(s)	401
PdiI	GCCGGC	1 cut(s)	318
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	2 cut(s)	285, 679
PkrI	GCNGC	3 cut(s)	271, 351, 473
Psp6I	CCWGG	1 cut(s)	69
PspGI	CCWGG	1 cut(s)	69
PspN4I	GGNNCC	2 cut(s)	62, 315
PspPI	GGNCC	3 cut(s)	61, 73, 89
PstI	CTGCAG	1 cut(s)	473
PsuI	RGATCY	2 cut(s)	6, 562
RsaI	GTAC	2 cut(s)	49, 529
RsaNI	GTAC	2 cut(s)	48, 528
RseI	CAYNNNNRTG	1 cut(s)	140
SapI	GCTCTTC	1 cut(s)	401
SaqAI	TTAA	4 cut(s)	80, 122, 381, 591
SatI	GCNGC	3 cut(s)	270, 350, 472
Sau3AI	GATC	5 cut(s)	6, 65, 457, 562, 645
Sau96I	GGNCC	3 cut(s)	61, 73, 89
ScrFI	CCNGG	2 cut(s)	59, 71
SduI	GDGCHC	1 cut(s)	99
SfcI	CTRYAG	3 cut(s)	453, 469, 696
SinI	GGWCC	1 cut(s)	61
SmiMI	CAYNNNNRTG	1 cut(s)	140
Sse9I	AATT	5 cut(s)	81, 119, 155, 494, 691
SsiI	CCGC	4 cut(s)	30, 270, 349, 443
SspMI	CTAG	1 cut(s)	195
StyD4I	CCNGG	2 cut(s)	57, 69
TaiI	ACGT	3 cut(s)	144, 248, 450
TaqI	TCGA	1 cut(s)	499
TasI	AATT	5 cut(s)	81, 119, 155, 494, 691
TauI	GCSGC	2 cut(s)	272, 352
TfiI	GAWTC	2 cut(s)	285, 679
Tru1I	TTAA	4 cut(s)	80, 122, 381, 591
Tru9I	TTAA	4 cut(s)	80, 122, 381, 591
TseI	GCWGC	1 cut(s)	471
TspDTI	ATGAA	2 cut(s)	17, 639
VpaK11BI	GGWCC	1 cut(s)	61
XapI	RAATTY	2 cut(s)	155, 691
XbaI	TCTAGA	1 cut(s)	194
XceI	RCATGY	1 cut(s)	485
XcmI	CCANNNNNNNNNTGG	1 cut(s)	83
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	1 cut(s)	195
ZraI	GACGTC	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.