Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002746

Physical Location & Seq

Genomic Coordinates Forward (+)

61222571 .. 61229560

Gene Structure 6990 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00042940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGGGGCGTAATCTGAGAAATGATTCTGAATCTCCAGTGAGGGACCGTGGGTCTCCTCGTAGGAGGAAGAGTCAATCTCGAACAGAGAGATCACCTACTCGACATAGAAAGTCCAACAGAGGAAGTTCTCCACCAAGAGAGAAACATTCAAGTCGCCCCAAGTCTCCCAAGCATGCAAGGTCACCCTCTCCTCCTCCTCGCTCTCCTTCTCCCCGGACAAAACGGCTAAGAAGAGCTGAAGCTGGAAGAGTGCCTGGGAGAGAACATGAAAGGATCAATGATAGGGGGATCAGTAGGGATTTACAGGAACGTGGTTCAGAGAGAGATGTTGGGAGTGATAGAAAGGAGAGATTGCCGGGAAGGAATGACACTGATGATAAATCTTCAAGAACAAGGCGTGGTACTTCTCCATCAGATCGACACCGCACGAGTAGGCATAGATCTCACTCACCTCTACATGCTGGTGATACAAGAGATGGGGAGAAAGTAATTGAGGGCTGTGGAAGAAATCGTAGCAGGGGGAGTGAGAAAAGCATGCACAGGGAAAAAAGTTCAGATGGGGAAAATGAGACTGAAAGACTGGAGAGAAGGACAGCAAAAGACAGCACTGGTCATAAGTCTTCAAGATCAAGACATGGGCAGTCGACTTCTCCATTGAATGGACACCACAAGAACAGACACCGAACTCGTTCACCTCAACAAGCTGCAGATACCAGAGCCCGTGATGAGGTAACTATTTTTCAGGTGCCAGAGTCAAGGGAGGCTGAGGATGGGATTGATGAGAATGATTCAGTAGCTATGATGAGGGCTGCTGAGGAAGCTTTGGAAGCACAGAAAAAGCAAAAACCTTCATTTGAGCTATCTGGAAAGCTTGCTGCGGAAACCAATAGATTCAGGGGTATAACACTGTTATACACTGAGCCAGCAGAAGGACGGCCACCTCATGTAAAATGGCGGCTTTATGTTTTCAAGGGTGGTGAAGTTCTTAATGATCCCATTAAGATACATCGGCAAAGCTGTTACCTTTTTGGGAGGGAAAGAAGGGTGGCAGACATCCCTACAGATCATCCATCCTGCAGCAAACAACATGCTGTTATACAGTTCCGGCAAGTAGAGAAGGAGGAACCTGATGGTACATTGTCAAAGGAAGTAAAGCCTTACATAATGGACCTTGGAAGCACAAATAAGACCTTTGTTAATGAAAGTGCAATTGAACCTCAGCGATATTATGAACTGATGGAAAGAGACACGATCAAATTTGGTAATAGTAGCCGAGAGTATGTGCTACTGCACGAGAATTCTATGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008283 GO:0009507 GO:0009536 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0019222 GO:0031047 GO:0031050 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0040008 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048519 GO:0048638 GO:0050789 GO:0050793 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

436

Amino Acids

49.98

Weight (kDa)

10.21

Isoelectric Point (pI)

69.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FHA	PF00498	341 - 421	1.1e-15	FHA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24410 AT3G20550
fragaria_vesca	FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_6g43590
malus_domestica	MD03G1208700.v1.1 MD06G1125500.v1.1 MD11G1223400.v1.1
prunus_persica	Prupe.4G208000_v2.0.a1
pyrus_communis	pycom06g11580 pycom11g19700
rosa_chinensis	RchiOBHm_Chr2g0160171 RchiOBHm_Chr4g0405041 RchiOBHm_Chr5g0037921
rosa_laevigata	RLG00000008882 RLG00000021201 RLG00000033823
rosa_multiflora	Rmu_sc0001744.1_g000004 Rmu_ssc0000241.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042940 Rroxscaffold_5G00349230
rosa_rugosa	Rorug04G0052500 Rorug05G0169400 Rorug05G0169500 Rorug05G0169600
rosa_samantha	Rh2BG560700 Rh4AG127600 Rh4BG121300 Rh4CG135400 Rh4DG121700 Rh5AG257700 Rh5BG260500 Rh5CG293100
rosa_wichuraiana	Rw2G045270 Rw4G010330 Rw5G023890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	745
AccB7I	CCANNNNNTGG	1 cut(s)	659
AccI	GTMKAC	1 cut(s)	644
AciI	CCGC	3 cut(s)	424, 878, 955
AclWI	GGATC	3 cut(s)	281, 296, 986
AcoI	YGGCCR	1 cut(s)	935
AcsI	RAATTY	2 cut(s)	1256, 1297
AcuI	CTGAAG	1 cut(s)	258
AfaI	GTAC	2 cut(s)	403, 1135
AfiI	CCNNNNNNNGG	3 cut(s)	659, 727, 929
AgsI	TTSAA	6 cut(s)	150, 387, 624, 658, 970, 1214
AhdI	GACNNNNNGTC	1 cut(s)	49
AjnI	CCWGG	1 cut(s)	253
AluBI	AGCT	8 cut(s)	236, 242, 704, 797, 821, 859, 871, 1017
AluI	AGCT	8 cut(s)	236, 242, 704, 797, 821, 859, 871, 1017
Alw26I	GTCTC	4 cut(s)	57, 168, 563, 1239
AlwI	GGATC	3 cut(s)	281, 296, 986
AoxI	GGCC	1 cut(s)	935
ApeKI	GCWGC	4 cut(s)	704, 809, 875, 1077
ApoI	RAATTY	2 cut(s)	1256, 1297
Asp700I	GAANNNNTTC	2 cut(s)	22, 688
AspS9I	GGNCC	2 cut(s)	43, 1168
AsuC2I	CCSGG	2 cut(s)	214, 357
AsuHPI	GGTGA	6 cut(s)	84, 174, 441, 476, 684, 989
AvaII	GGWCC	2 cut(s)	43, 1168
BanI	GGYRCC	1 cut(s)	745
BanII	GRGCYC	1 cut(s)	721
BauI	CACGAG	2 cut(s)	427, 1292
BbsI	GAAGAC	1 cut(s)	612
BbvCI	CCTCAGC	3 cut(s)	765, 813, 1218
BbvI	GCAGC	4 cut(s)	691, 796, 862, 1089
BccI	CCATC	7 cut(s)	418, 470, 551, 764, 1078, 1124, 1231
BceAI	ACGGC	2 cut(s)	239, 950
BciT130I	CCWGG	1 cut(s)	255
BcnI	CCSGG	2 cut(s)	214, 357
BcoDI	GTCTC	4 cut(s)	57, 168, 563, 1239
BfmI	CTRYAG	3 cut(s)	705, 1059, 1075
BglII	AGATCT	1 cut(s)	440
BisI	GCNGC	5 cut(s)	705, 810, 876, 956, 1078
BlsI	GCNGC	5 cut(s)	706, 811, 877, 957, 1079
Bme1390I	CCNGG	3 cut(s)	214, 255, 357
Bme18I	GGWCC	2 cut(s)	43, 1168
BmeRI	GACNNNNNGTC	1 cut(s)	49
BmgT120I	GGNCC	2 cut(s)	43, 1168
BmiI	GGNNCC	3 cut(s)	44, 747, 1125
BmrFI	CCNGG	3 cut(s)	214, 255, 357
BpiI	GAAGAC	1 cut(s)	612
BplI	GAGNNNNNCTC	2 cut(s)	61, 93
BpmI	CTGGAG	2 cut(s)	18, 602
Bpu10I	CCTNAGC	3 cut(s)	765, 813, 1218
BpuMI	CCSGG	2 cut(s)	214, 357
BsaI	GGTCTC	1 cut(s)	57
BsaJI	CCNNGG	4 cut(s)	46, 212, 254, 1171
BsaXI	ACNNNNNCTCC	2 cut(s)	55, 85
Bsc4I	CCNNNNNNNGG	3 cut(s)	659, 727, 929
Bse1I	ACTGG	3 cut(s)	35, 585, 613
BseBI	CCWGG	1 cut(s)	255
BseDI	CCNNGG	4 cut(s)	46, 212, 254, 1171
BseGI	GGATG	4 cut(s)	775, 1053, 1066, 1070
BseLI	CCNNNNNNNGG	3 cut(s)	659, 727, 929
BseMII	CTCAG	5 cut(s)	5, 756, 804, 909, 1232
BseNI	ACTGG	3 cut(s)	35, 585, 613
BseRI	GAGGAG	4 cut(s)	45, 180, 183, 186
BseXI	GCAGC	4 cut(s)	691, 796, 862, 1089
BsgI	GTGCAG	1 cut(s)	1274
BshFI	GGCC	1 cut(s)	937
BshNI	GGYRCC	1 cut(s)	745
BsiSI	CCGG	3 cut(s)	214, 356, 1105
BslFI	GGGAC	1 cut(s)	56
BslI	CCNNNNNNNGG	3 cut(s)	659, 727, 929
BsmAI	GTCTC	4 cut(s)	57, 168, 563, 1239
BsmFI	GGGAC	1 cut(s)	56
BsnI	GGCC	1 cut(s)	937
Bso31I	GGTCTC	1 cut(s)	57
Bsp1286I	GDGCHC	1 cut(s)	721
Bsp143I	GATC	9 cut(s)	89, 273, 288, 415, 440, 626, 991, 1063, 1251
BspACI	CCGC	3 cut(s)	424, 878, 955
BspANI	GGCC	1 cut(s)	937
BspCNI	CTCAG	5 cut(s)	6, 757, 805, 910, 1231
BspLI	GGNNCC	3 cut(s)	44, 747, 1125
BspMAI	CTGCAG	2 cut(s)	709, 1079
BspPI	GGATC	3 cut(s)	281, 296, 986
BspQI	GCTCTTC	1 cut(s)	226
BspT107I	GGYRCC	1 cut(s)	745
BspTNI	GGTCTC	1 cut(s)	57
BsrI	ACTGG	3 cut(s)	35, 585, 613
BssECI	CCNNGG	4 cut(s)	46, 212, 254, 1171
BssMI	GATC	9 cut(s)	89, 273, 288, 415, 440, 626, 991, 1063, 1251
BssSI	CACGAG	2 cut(s)	427, 1292
BssT1I	CCWWGG	1 cut(s)	1171
Bst2BI	CACGAG	2 cut(s)	427, 1292
Bst2UI	CCWGG	1 cut(s)	255
Bst4CI	ACNGT	3 cut(s)	47, 909, 1101
Bst6I	CTCTTC	3 cut(s)	62, 226, 241
BstC8I	GCNNGC	4 cut(s)	174, 536, 873, 924
BstDEI	CTNAG	6 cut(s)	14, 227, 765, 813, 918, 1218
BstDSI	CCRYGG	1 cut(s)	46
BstEII	GGTNACC	1 cut(s)	180
BstF5I	GGATG	4 cut(s)	775, 1053, 1066, 1070
BstKTI	GATC	9 cut(s)	92, 276, 291, 418, 443, 629, 994, 1066, 1254
BstMAI	GTCTC	4 cut(s)	57, 168, 563, 1239
BstMBI	GATC	9 cut(s)	89, 273, 288, 415, 440, 626, 991, 1063, 1251
BstMWI	GCNNNNNNNGC	2 cut(s)	818, 827
BstNI	CCWGG	1 cut(s)	255
BstNSI	RCATGY	4 cut(s)	176, 461, 538, 1091
BstPI	GGTNACC	1 cut(s)	180
BstSCI	CCNGG	3 cut(s)	212, 253, 355
BstSFI	CTRYAG	3 cut(s)	705, 1059, 1075
BstV1I	GCAGC	4 cut(s)	691, 796, 862, 1089
BstV2I	GAAGAC	1 cut(s)	612
BstX2I	RGATCY	1 cut(s)	440
BstYI	RGATCY	1 cut(s)	440
BsuRI	GGCC	1 cut(s)	937
BtgI	CCRYGG	1 cut(s)	46
BtsCI	GGATG	4 cut(s)	775, 1053, 1066, 1070
BtsIMutI	CAGTG	5 cut(s)	42, 369, 606, 905, 915
Cac8I	GCNNGC	4 cut(s)	174, 536, 873, 924
Cfr13I	GGNCC	2 cut(s)	43, 1168
Csp6I	GTAC	2 cut(s)	402, 1134
CviAII	CATG	7 cut(s)	173, 266, 458, 535, 635, 944, 1088
CviQI	GTAC	2 cut(s)	402, 1134
DdeI	CTNAG	6 cut(s)	14, 227, 765, 813, 918, 1218
DpnI	GATC	9 cut(s)	91, 275, 290, 417, 442, 628, 993, 1065, 1253
DpnII	GATC	9 cut(s)	89, 273, 288, 415, 440, 626, 991, 1063, 1251
DriI	GACNNNNNGTC	1 cut(s)	49
EaeI	YGGCCR	1 cut(s)	935
Eam1104I	CTCTTC	3 cut(s)	62, 226, 241
Eam1105I	GACNNNNNGTC	1 cut(s)	49
EarI	CTCTTC	3 cut(s)	62, 226, 241
Eco130I	CCWWGG	1 cut(s)	1171
Eco24I	GRGCYC	1 cut(s)	721
Eco31I	GGTCTC	1 cut(s)	57
Eco47I	GGWCC	2 cut(s)	43, 1168
Eco57I	CTGAAG	1 cut(s)	258
Eco91I	GGTNACC	1 cut(s)	180
EcoO65I	GGTNACC	1 cut(s)	180
EcoRI	GAATTC	1 cut(s)	1297
EcoRII	CCWGG	1 cut(s)	253
EcoT14I	CCWWGG	1 cut(s)	1171
EcoT38I	GRGCYC	1 cut(s)	721
ErhI	CCWWGG	1 cut(s)	1171
FaeI	CATG	7 cut(s)	176, 269, 461, 538, 638, 947, 1091
FaqI	GGGAC	1 cut(s)	56
FatI	CATG	7 cut(s)	172, 265, 457, 534, 634, 943, 1087
FblI	GTMKAC	1 cut(s)	644
Fnu4HI	GCNGC	5 cut(s)	705, 810, 876, 956, 1078
FokI	GGATG	4 cut(s)	782, 1040, 1053, 1057
FriOI	GRGCYC	1 cut(s)	721
Fsp4HI	GCNGC	5 cut(s)	705, 810, 876, 956, 1078
GluI	GCNGC	5 cut(s)	705, 810, 876, 956, 1078
GsuI	CTGGAG	2 cut(s)	18, 602
HaeIII	GGCC	1 cut(s)	937
HapII	CCGG	3 cut(s)	214, 356, 1105
Hin1II	CATG	7 cut(s)	176, 269, 461, 538, 638, 947, 1091
HincII	GTYRAC	1 cut(s)	645
HindII	GTYRAC	1 cut(s)	645
HindIII	AAGCTT	2 cut(s)	819, 869
HinfI	GANTC	6 cut(s)	23, 29, 70, 752, 788, 891
HpaII	CCGG	3 cut(s)	214, 356, 1105
HphI	GGTGA	6 cut(s)	84, 174, 441, 476, 684, 989
Hpy166II	GTNNAC	2 cut(s)	645, 692
Hpy188I	TCNGA	5 cut(s)	15, 28, 319, 415, 556
Hpy188III	TCNNGA	5 cut(s)	78, 387, 624, 630, 864
Hpy8I	GTNNAC	2 cut(s)	645, 692
HpyAV	CCTTC	7 cut(s)	216, 354, 582, 858, 923, 1035, 1111
HpyCH4III	ACNGT	3 cut(s)	47, 909, 1101
HpyCH4IV	ACGT	1 cut(s)	310
HpyCH4V	TGCA	6 cut(s)	176, 538, 707, 1077, 1208, 1291
HpyF10VI	GCNNNNNNNGC	2 cut(s)	818, 827
HpyF3I	CTNAG	6 cut(s)	14, 227, 765, 813, 918, 1218
HpySE526I	ACGT	1 cut(s)	310
Hsp92II	CATG	7 cut(s)	176, 269, 461, 538, 638, 947, 1091
Kzo9I	GATC	9 cut(s)	89, 273, 288, 415, 440, 626, 991, 1063, 1251
LguI	GCTCTTC	1 cut(s)	226
Lsp1109I	GCAGC	4 cut(s)	691, 796, 862, 1089
MaeII	ACGT	1 cut(s)	310
MaeIII	GTNAC	3 cut(s)	180, 730, 1019
MalI	GATC	9 cut(s)	91, 275, 290, 417, 442, 628, 993, 1065, 1253
MboI	GATC	9 cut(s)	89, 273, 288, 415, 440, 626, 991, 1063, 1251
MboII	GAAGA	6 cut(s)	79, 243, 258, 375, 516, 612
MfeI	CAATTG	1 cut(s)	1209
MflI	RGATCY	1 cut(s)	440
MhlI	GDGCHC	1 cut(s)	721
MluCI	AATT	4 cut(s)	489, 1209, 1256, 1297
MlyI	GAGTC	2 cut(s)	79, 761
MmeI	TCCRAC	1 cut(s)	138
MroXI	GAANNNNTTC	2 cut(s)	22, 688
MseI	TTAA	3 cut(s)	987, 999, 1197
MslI	CAYNNNNRTG	1 cut(s)	462
MspI	CCGG	3 cut(s)	214, 356, 1105
MspR9I	CCNGG	3 cut(s)	214, 255, 357
MunI	CAATTG	1 cut(s)	1209
MvaI	CCWGG	1 cut(s)	255
MwoI	GCNNNNNNNGC	2 cut(s)	818, 827
NciI	CCSGG	2 cut(s)	214, 357
NdeII	GATC	9 cut(s)	89, 273, 288, 415, 440, 626, 991, 1063, 1251
NlaIII	CATG	7 cut(s)	176, 269, 461, 538, 638, 947, 1091
NlaIV	GGNNCC	3 cut(s)	44, 747, 1125
NmeAIII	GCCGAG	1 cut(s)	1298
NmuCI	GTSAC	1 cut(s)	180
NspI	RCATGY	4 cut(s)	176, 461, 538, 1091
PaeI	GCATGC	2 cut(s)	176, 538
PciSI	GCTCTTC	1 cut(s)	226
PdmI	GAANNNNTTC	2 cut(s)	22, 688
PfeI	GAWTC	4 cut(s)	23, 29, 788, 891
PflMI	CCANNNNNTGG	1 cut(s)	659
PkrI	GCNGC	5 cut(s)	706, 811, 877, 957, 1079
PleI	GAGTC	2 cut(s)	78, 760
PpsI	GAGTC	2 cut(s)	78, 760
Psp6I	CCWGG	1 cut(s)	253
PspEI	GGTNACC	1 cut(s)	180
PspGI	CCWGG	1 cut(s)	253
PspN4I	GGNNCC	3 cut(s)	44, 747, 1125
PspPI	GGNCC	2 cut(s)	43, 1168
PstI	CTGCAG	2 cut(s)	709, 1079
PsuI	RGATCY	1 cut(s)	440
RsaI	GTAC	2 cut(s)	403, 1135
RsaNI	GTAC	2 cut(s)	402, 1134
RseI	CAYNNNNRTG	1 cut(s)	462
SalI	GTCGAC	1 cut(s)	643
SapI	GCTCTTC	1 cut(s)	226
SaqAI	TTAA	3 cut(s)	987, 999, 1197
SatI	GCNGC	5 cut(s)	705, 810, 876, 956, 1078
Sau3AI	GATC	9 cut(s)	89, 273, 288, 415, 440, 626, 991, 1063, 1251
Sau96I	GGNCC	2 cut(s)	43, 1168
SchI	GAGTC	2 cut(s)	79, 761
ScrFI	CCNGG	3 cut(s)	214, 255, 357
SduI	GDGCHC	1 cut(s)	721
SfcI	CTRYAG	3 cut(s)	705, 1059, 1075
SinI	GGWCC	2 cut(s)	43, 1168
SmiMI	CAYNNNNRTG	1 cut(s)	462
SphI	GCATGC	2 cut(s)	176, 538
Sse9I	AATT	4 cut(s)	489, 1209, 1256, 1297
SsiI	CCGC	3 cut(s)	424, 878, 955
StyD4I	CCNGG	3 cut(s)	212, 253, 355
StyI	CCWWGG	1 cut(s)	1171
TaaI	ACNGT	3 cut(s)	47, 909, 1101
TaiI	ACGT	1 cut(s)	313
TaqI	TCGA	4 cut(s)	79, 100, 418, 644
TasI	AATT	4 cut(s)	489, 1209, 1256, 1297
TauI	GCSGC	1 cut(s)	958
TfiI	GAWTC	4 cut(s)	23, 29, 788, 891
Tru1I	TTAA	3 cut(s)	987, 999, 1197
Tru9I	TTAA	3 cut(s)	987, 999, 1197
TscAI	CASTG	5 cut(s)	42, 376, 613, 912, 922
TseFI	GTSAC	1 cut(s)	180
TseI	GCWGC	4 cut(s)	704, 809, 875, 1077
Tsp45I	GTSAC	1 cut(s)	180
TspDTI	ATGAA	4 cut(s)	282, 840, 1215, 1245
TspRI	CASTG	5 cut(s)	42, 376, 613, 912, 922
Van91I	CCANNNNNTGG	1 cut(s)	659
VpaK11BI	GGWCC	2 cut(s)	43, 1168
XapI	RAATTY	2 cut(s)	1256, 1297
XceI	RCATGY	4 cut(s)	176, 461, 538, 1091
XmiI	GTMKAC	1 cut(s)	644
XmnI	GAANNNNTTC	2 cut(s)	22, 688

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.