Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002746

Physical Location & Seq

Genomic Coordinates Forward (+)

19432446 .. 19435897

Gene Structure 3452 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG121700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGACTCTGCCAGAGGAGAAGAGTATAACACTATTATACACTGAGCCAGCAGAAGGACGGCCACCTCGTGTAAAATGGCGGCTTTATGTTTTTAAGGGTGGTGAAGCTTTTAATGAACCCATTAAGATACATCGCCAAAGCTGTTACCTTTTCGGGAGGGAAAGAAGGGTGGCAGACATCCCTACGGATCACCCATCCTGCAGCAAGCAACATGCTGTTCTACAATTCCGGCAAGTAGAAAAGGAGCAACCAGACGGTACATTGTCAAAGGAAGTCAAGCCTTACGTAATGGATCTTGGAAGCACAAATAAAACTTTTGTCAATGAAACTGCAATTGAACCTCAGCGATATTATGAACTTATGGAAAAGGACACGATTAAATTTGGTAATAGTAGAAACCAACTCAACAAGATGGGCGGGGTTAAGTTTCAGCTACAGATCAGGAAGTGGCGGATGTTGGAAAGGACGGATGACTATGGGCGAGAATTGTATCAGATGGCTGTGGCGCCAGCTGCTATGGAGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008283 GO:0009507 GO:0009536 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0019222 GO:0031047 GO:0031050 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0040008 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048519 GO:0048638 GO:0050789 GO:0050793 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

175

Amino Acids

20.48

Weight (kDa)

9.0

Isoelectric Point (pI)

46.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FHA	PF00498	49 - 129	1.8e-16	FHA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24410 AT3G20550
fragaria_vesca	FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_6g43590
malus_domestica	MD03G1208700.v1.1 MD06G1125500.v1.1 MD11G1223400.v1.1
prunus_persica	Prupe.4G208000_v2.0.a1
pyrus_communis	pycom06g11580 pycom11g19700
rosa_chinensis	RchiOBHm_Chr2g0160171 RchiOBHm_Chr4g0405041 RchiOBHm_Chr5g0037921
rosa_laevigata	RLG00000008882 RLG00000021201 RLG00000033823
rosa_multiflora	Rmu_sc0001744.1_g000004 Rmu_ssc0000241.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042940 Rroxscaffold_5G00349230
rosa_rugosa	Rorug04G0052500 Rorug05G0169400 Rorug05G0169500 Rorug05G0169600
rosa_samantha	Rh2BG560700 Rh4AG127600 Rh4BG121300 Rh4CG135400 Rh4DG121700 Rh5AG257700 Rh5BG260500 Rh5CG293100
rosa_wichuraiana	Rw2G045270 Rw4G010330 Rw5G023890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	505
AciI	CCGC	3 cut(s)	79, 417, 451
AclWI	GGATC	2 cut(s)	195, 300
AcoI	YGGCCR	1 cut(s)	59
AcsI	RAATTY	1 cut(s)	380
AcyI	GRCGYC	1 cut(s)	506
AdeI	CACNNNGTG	1 cut(s)	68
AfaI	GTAC	1 cut(s)	259
AfiI	CCNNNNNNNGG	1 cut(s)	53
AgsI	TTSAA	1 cut(s)	338
AluBI	AGCT	4 cut(s)	107, 141, 433, 512
AluI	AGCT	4 cut(s)	107, 141, 433, 512
AlwI	GGATC	2 cut(s)	195, 300
AoxI	GGCC	1 cut(s)	59
ApeKI	GCWGC	2 cut(s)	201, 512
ApoI	RAATTY	1 cut(s)	380
AspLEI	GCGC	1 cut(s)	508
AsuHPI	GGTGA	2 cut(s)	113, 182
BanI	GGYRCC	1 cut(s)	505
BauI	CACGAG	1 cut(s)	66
BbvCI	CCTCAGC	1 cut(s)	342
BbvI	GCAGC	2 cut(s)	213, 499
BccI	CCATC	3 cut(s)	202, 406, 490
BceAI	ACGGC	1 cut(s)	74
BfmI	CTRYAG	2 cut(s)	199, 434
BfoI	RGCGCY	1 cut(s)	509
BisI	GCNGC	3 cut(s)	80, 202, 513
BlsI	GCNGC	3 cut(s)	81, 203, 514
BmiI	GGNNCC	1 cut(s)	507
Bpu10I	CCTNAGC	1 cut(s)	342
BsaAI	YACGTR	1 cut(s)	286
BsaHI	GRCGYC	1 cut(s)	506
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
BseGI	GGATG	4 cut(s)	177, 194, 459, 475
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseMII	CTCAG	2 cut(s)	33, 356
BseRI	GAGGAG	1 cut(s)	29
BseXI	GCAGC	2 cut(s)	213, 499
BshFI	GGCC	1 cut(s)	61
BshNI	GGYRCC	1 cut(s)	505
BsiSI	CCGG	1 cut(s)	229
BslI	CCNNNNNNNGG	1 cut(s)	53
BsnI	GGCC	1 cut(s)	61
Bsp143I	GATC	3 cut(s)	187, 292, 438
BspACI	CCGC	3 cut(s)	79, 417, 451
BspANI	GGCC	1 cut(s)	61
BspCNI	CTCAG	2 cut(s)	34, 355
BspLI	GGNNCC	1 cut(s)	507
BspMAI	CTGCAG	1 cut(s)	203
BspPI	GGATC	2 cut(s)	195, 300
BspT107I	GGYRCC	1 cut(s)	505
BssMI	GATC	3 cut(s)	187, 292, 438
BssNI	GRCGYC	1 cut(s)	506
BssSI	CACGAG	1 cut(s)	66
Bst2BI	CACGAG	1 cut(s)	66
Bst4CI	ACNGT	1 cut(s)	257
Bst6I	CTCTTC	1 cut(s)	14
BstACI	GRCGYC	1 cut(s)	506
BstBAI	YACGTR	1 cut(s)	286
BstC8I	GCNNGC	3 cut(s)	48, 206, 510
BstDEI	CTNAG	2 cut(s)	42, 342
BstF5I	GGATG	4 cut(s)	177, 194, 459, 475
BstH2I	RGCGCY	1 cut(s)	509
BstHHI	GCGC	1 cut(s)	508
BstKTI	GATC	3 cut(s)	190, 295, 441
BstMBI	GATC	3 cut(s)	187, 292, 438
BstMWI	GCNNNNNNNGC	1 cut(s)	512
BstNSI	RCATGY	1 cut(s)	215
BstSFI	CTRYAG	2 cut(s)	199, 434
BstSNI	TACGTA	1 cut(s)	286
BstV1I	GCAGC	2 cut(s)	213, 499
BstX2I	RGATCY	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	292
BsuRI	GGCC	1 cut(s)	61
BtgZI	GCGATG	1 cut(s)	116
BtsCI	GGATG	4 cut(s)	177, 194, 459, 475
BtsIMutI	CAGTG	1 cut(s)	39
Cac8I	GCNNGC	3 cut(s)	48, 206, 510
CfoI	GCGC	1 cut(s)	508
Csp6I	GTAC	1 cut(s)	258
CviAII	CATG	1 cut(s)	212
CviJI	RGCY	9 cut(s)	46, 61, 82, 107, 141, 280, 433, 500, 512
CviKI_1	RGCY	9 cut(s)	46, 61, 82, 107, 141, 280, 433, 500, 512
CviQI	GTAC	1 cut(s)	258
DdeI	CTNAG	2 cut(s)	42, 342
DinI	GGCGCC	1 cut(s)	507
DpnI	GATC	3 cut(s)	189, 294, 440
DpnII	GATC	3 cut(s)	187, 292, 438
DraIII	CACNNNGTG	1 cut(s)	68
EaeI	YGGCCR	1 cut(s)	59
Eam1104I	CTCTTC	1 cut(s)	14
EarI	CTCTTC	1 cut(s)	14
EciI	GGCGGA	1 cut(s)	466
Eco105I	TACGTA	1 cut(s)	286
EgeI	GGCGCC	1 cut(s)	507
EheI	GGCGCC	1 cut(s)	507
FaeI	CATG	1 cut(s)	215
FaiI	YATR	8 cut(s)	26, 37, 87, 213, 354, 362, 477, 518
FatI	CATG	1 cut(s)	211
FauI	CCCGC	1 cut(s)	410
Fnu4HI	GCNGC	3 cut(s)	80, 202, 513
FokI	GGATG	4 cut(s)	164, 181, 466, 482
Fsp4HI	GCNGC	3 cut(s)	80, 202, 513
GlaI	GCGC	1 cut(s)	507
GluI	GCNGC	3 cut(s)	80, 202, 513
HaeII	RGCGCY	1 cut(s)	509
HaeIII	GGCC	1 cut(s)	61
HapII	CCGG	1 cut(s)	229
HhaI	GCGC	1 cut(s)	508
Hin1I	GRCGYC	1 cut(s)	506
Hin1II	CATG	1 cut(s)	215
Hin6I	GCGC	1 cut(s)	506
HinP1I	GCGC	1 cut(s)	506
HindIII	AAGCTT	1 cut(s)	105
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	1 cut(s)	229
HphI	GGTGA	2 cut(s)	113, 182
Hpy188I	TCNGA	1 cut(s)	495
Hpy188III	TCNNGA	2 cut(s)	154, 442
HpyAV	CCTTC	2 cut(s)	47, 159
HpyCH4III	ACNGT	1 cut(s)	257
HpyCH4IV	ACGT	1 cut(s)	285
HpyCH4V	TGCA	2 cut(s)	201, 332
HpyF10VI	GCNNNNNNNGC	1 cut(s)	512
HpyF3I	CTNAG	2 cut(s)	42, 342
HpySE526I	ACGT	1 cut(s)	285
Hsp92I	GRCGYC	1 cut(s)	506
Hsp92II	CATG	1 cut(s)	215
HspAI	GCGC	1 cut(s)	506
KasI	GGCGCC	1 cut(s)	505
Kzo9I	GATC	3 cut(s)	187, 292, 438
LmnI	GCTCC	1 cut(s)	244
LpnPI	CCDG	7 cut(s)	24, 60, 211, 242, 264, 427, 522
Lsp1109I	GCAGC	2 cut(s)	213, 499
MaeII	ACGT	1 cut(s)	285
MaeIII	GTNAC	1 cut(s)	143
MalI	GATC	3 cut(s)	189, 294, 440
MboI	GATC	3 cut(s)	187, 292, 438
MboII	GAAGA	1 cut(s)	31
MfeI	CAATTG	1 cut(s)	333
MflI	RGATCY	1 cut(s)	292
MluCI	AATT	4 cut(s)	224, 333, 380, 485
Mly113I	GGCGCC	1 cut(s)	506
MmeI	TCCRAC	1 cut(s)	438
MnlI	CCTC	4 cut(s)	7, 75, 150, 351
MseI	TTAA	5 cut(s)	93, 111, 123, 378, 423
MspA1I	CMGCKG	1 cut(s)	512
MspI	CCGG	1 cut(s)	229
MunI	CAATTG	1 cut(s)	333
MwoI	GCNNNNNNNGC	1 cut(s)	512
NarI	GGCGCC	1 cut(s)	506
NdeII	GATC	3 cut(s)	187, 292, 438
NlaIII	CATG	1 cut(s)	215
NlaIV	GGNNCC	1 cut(s)	507
NspI	RCATGY	1 cut(s)	215
PcsI	WCGNNNNNNNCGW	1 cut(s)	64
PkrI	GCNGC	3 cut(s)	81, 203, 514
PluTI	GGCGCC	1 cut(s)	509
Ppu21I	YACGTR	1 cut(s)	286
PspN4I	GGNNCC	1 cut(s)	507
PstI	CTGCAG	1 cut(s)	203
PsuI	RGATCY	1 cut(s)	292
PvuII	CAGCTG	1 cut(s)	512
RsaI	GTAC	1 cut(s)	259
RsaNI	GTAC	1 cut(s)	258
SaqAI	TTAA	5 cut(s)	93, 111, 123, 378, 423
SatI	GCNGC	3 cut(s)	80, 202, 513
Sau3AI	GATC	3 cut(s)	187, 292, 438
SetI	ASST	8 cut(s)	67, 109, 143, 150, 288, 343, 435, 514
SfcI	CTRYAG	2 cut(s)	199, 434
SfoI	GGCGCC	1 cut(s)	507
SnaBI	TACGTA	1 cut(s)	286
Sse9I	AATT	4 cut(s)	224, 333, 380, 485
SsiI	CCGC	3 cut(s)	79, 417, 451
SspDI	GGCGCC	1 cut(s)	505
TaaI	ACNGT	1 cut(s)	257
TaiI	ACGT	1 cut(s)	288
TasI	AATT	4 cut(s)	224, 333, 380, 485
TauI	GCSGC	1 cut(s)	82
Tru1I	TTAA	5 cut(s)	93, 111, 123, 378, 423
Tru9I	TTAA	5 cut(s)	93, 111, 123, 378, 423
TscAI	CASTG	1 cut(s)	46
TseI	GCWGC	2 cut(s)	201, 512
TspDTI	ATGAA	3 cut(s)	129, 339, 369
TspGWI	ACGGA	2 cut(s)	200, 482
TspRI	CASTG	1 cut(s)	46
XapI	RAATTY	1 cut(s)	380
XceI	RCATGY	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.