Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002746

Physical Location & Seq

Genomic Coordinates Reverse (-)

72909685 .. 72913292

Gene Structure 3608 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021201

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGCAATGCAAGGACAAGTTTCTCCTTCAGAGTTTAAAAACCAATGATGGTGCAACTCCAAAGGAGATTACTCTAGAAGTGTTTAATGAAGAGGCAGGACATGTGGTTGAGGAGTGCAAATTCAGAGTGGTATATGTTACTCCACCTCAGCCCCCTTCTTCAGTCCCAGAAAGGTCGAAGGAAGGGTCTTCACCAAGAGCTTCAATAGTGGAGAATGAAAATCTTAATGGTGCTGAGTTTTCCAATATATTGTGCAACACAACTATGATGAGGACTGCTAAGGAAGCAAAAGAAAAGCAGAAACCATCGTTTGAGCTATCTGGAAATCTTGATGCAAAAACCAATAGGTTCAAAGGTGCAACACTATTATACTTGACGCCAGCAGAAGGACGACAAACTCATGTAAAATGGCGGCTTTATGTTTTCAAGGGTGGTGAAGATTTTAACAAACTCATTAAGATAGAGATGTCACCTTTTCGGAAGGGAAAGAAAGGTGGCATACGTCCCTACAGATCACCCCTCCTACAGCAAGCAACATACGTACATTTATACAATTCCAGCGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Motile_Sperm

Protein Analysis

189

Amino Acids

21.26

Weight (kDa)

9.28

Isoelectric Point (pI)

47.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24410 AT3G20550
fragaria_vesca	FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_6g43590
malus_domestica	MD03G1208700.v1.1 MD06G1125500.v1.1 MD11G1223400.v1.1
prunus_persica	Prupe.4G208000_v2.0.a1
pyrus_communis	pycom06g11580 pycom11g19700
rosa_chinensis	RchiOBHm_Chr2g0160171 RchiOBHm_Chr4g0405041 RchiOBHm_Chr5g0037921
rosa_laevigata	RLG00000008882 RLG00000021201 RLG00000033823
rosa_multiflora	Rmu_sc0001744.1_g000004 Rmu_ssc0000241.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042940 Rroxscaffold_5G00349230
rosa_rugosa	Rorug04G0052500 Rorug05G0169400 Rorug05G0169500 Rorug05G0169600
rosa_samantha	Rh2BG560700 Rh4AG127600 Rh4BG121300 Rh4CG135400 Rh4DG121700 Rh5AG257700 Rh5BG260500 Rh5CG293100
rosa_wichuraiana	Rw2G045270 Rw4G010330 Rw5G023890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	412
AcsI	RAATTY	1 cut(s)	119
AcuI	CTGAAG	2 cut(s)	11, 144
AcyI	GRCGYC	1 cut(s)	377
AfaI	GTAC	1 cut(s)	543
AfiI	CCNNNNNNNGG	1 cut(s)	386
AflIII	ACRYGT	1 cut(s)	100
AgsI	TTSAA	3 cut(s)	204, 352, 427
AluBI	AGCT	2 cut(s)	200, 316
AluI	AGCT	2 cut(s)	200, 316
ApoI	RAATTY	1 cut(s)	119
ArsI	GACNNNNNNTTYG	2 cut(s)	170, 202
AsuHPI	GGTGA	4 cut(s)	183, 446, 462, 507
BbsI	GAAGAC	1 cut(s)	180
BbvCI	CCTCAGC	1 cut(s)	147
BccI	CCATC	2 cut(s)	41, 313
BfaI	CTAG	1 cut(s)	74
BfmI	CTRYAG	2 cut(s)	508, 524
BisI	GCNGC	1 cut(s)	413
BlsI	GCNGC	1 cut(s)	414
BmsI	GCATC	1 cut(s)	322
BpiI	GAAGAC	1 cut(s)	180
Bpu10I	CCTNAGC	2 cut(s)	147, 279
BsaAI	YACGTR	1 cut(s)	541
BsaHI	GRCGYC	1 cut(s)	377
Bsc4I	CCNNNNNNNGG	1 cut(s)	386
Bse3DI	GCAATG	1 cut(s)	11
BseLI	CCNNNNNNNGG	1 cut(s)	386
BseMI	GCAATG	1 cut(s)	11
BseMII	CTCAG	2 cut(s)	161, 225
BseRI	GAGGAG	1 cut(s)	125
BslFI	GGGAC	2 cut(s)	149, 489
BslI	CCNNNNNNNGG	1 cut(s)	386
BsmFI	GGGAC	2 cut(s)	149, 489
Bsp143I	GATC	1 cut(s)	512
BspACI	CCGC	1 cut(s)	412
BspCNI	CTCAG	2 cut(s)	160, 226
BsrDI	GCAATG	1 cut(s)	11
BssMI	GATC	1 cut(s)	512
BssNI	GRCGYC	1 cut(s)	377
Bst6I	CTCTTC	1 cut(s)	84
BstACI	GRCGYC	1 cut(s)	377
BstBAI	YACGTR	1 cut(s)	541
BstC8I	GCNNGC	2 cut(s)	381, 531
BstDEI	CTNAG	3 cut(s)	147, 234, 279
BstKTI	GATC	1 cut(s)	515
BstMBI	GATC	1 cut(s)	512
BstMWI	GCNNNNNNNGC	1 cut(s)	284
BstNSI	RCATGY	1 cut(s)	104
BstSFI	CTRYAG	2 cut(s)	508, 524
BstSNI	TACGTA	1 cut(s)	541
BstV2I	GAAGAC	1 cut(s)	180
Cac8I	GCNNGC	2 cut(s)	381, 531
CseI	GACGC	1 cut(s)	385
Csp6I	GTAC	1 cut(s)	542
CviAII	CATG	2 cut(s)	101, 401
CviJI	RGCY	4 cut(s)	151, 200, 316, 415
CviKI_1	RGCY	4 cut(s)	151, 200, 316, 415
CviQI	GTAC	1 cut(s)	542
DdeI	CTNAG	3 cut(s)	147, 234, 279
DpnI	GATC	1 cut(s)	514
DpnII	GATC	1 cut(s)	512
DraI	TTTAAA	1 cut(s)	36
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
Eco105I	TACGTA	1 cut(s)	541
Eco57I	CTGAAG	2 cut(s)	11, 144
FaeI	CATG	2 cut(s)	104, 404
FaqI	GGGAC	2 cut(s)	149, 489
FatI	CATG	2 cut(s)	100, 400
Fnu4HI	GCNGC	1 cut(s)	413
Fsp4HI	GCNGC	1 cut(s)	413
FspBI	CTAG	1 cut(s)	74
GluI	GCNGC	1 cut(s)	413
HgaI	GACGC	1 cut(s)	385
Hin1I	GRCGYC	1 cut(s)	377
Hin1II	CATG	2 cut(s)	104, 404
HphI	GGTGA	4 cut(s)	183, 446, 462, 507
Hpy188I	TCNGA	3 cut(s)	30, 125, 480
Hpy188III	TCNNGA	3 cut(s)	74, 321, 329
HpyAV	CCTTC	6 cut(s)	35, 165, 172, 176, 380, 475
HpyCH4IV	ACGT	2 cut(s)	502, 540
HpyCH4V	TGCA	7 cut(s)	4, 9, 53, 117, 255, 335, 359
HpyF10VI	GCNNNNNNNGC	1 cut(s)	284
HpyF3I	CTNAG	3 cut(s)	147, 234, 279
HpySE526I	ACGT	2 cut(s)	502, 540
Hsp92I	GRCGYC	1 cut(s)	377
Hsp92II	CATG	2 cut(s)	104, 404
Kzo9I	GATC	1 cut(s)	512
LpnPI	CCDG	4 cut(s)	81, 180, 306, 393
LweI	GCATC	1 cut(s)	322
MaeI	CTAG	1 cut(s)	74
MaeII	ACGT	2 cut(s)	502, 540
MaeIII	GTNAC	2 cut(s)	136, 468
MalI	GATC	1 cut(s)	514
MboI	GATC	1 cut(s)	512
MboII	GAAGA	4 cut(s)	101, 150, 180, 449
MluCI	AATT	2 cut(s)	119, 553
MnlI	CCTC	5 cut(s)	85, 103, 156, 264, 530
MseI	TTAA	5 cut(s)	35, 84, 225, 444, 456
MslI	CAYNNNNRTG	1 cut(s)	263
MwoI	GCNNNNNNNGC	1 cut(s)	284
NdeII	GATC	1 cut(s)	512
NlaIII	CATG	2 cut(s)	104, 404
NmuCI	GTSAC	1 cut(s)	468
NspI	RCATGY	1 cut(s)	104
PciI	ACATGT	1 cut(s)	100
PkrI	GCNGC	1 cut(s)	414
Ppu21I	YACGTR	1 cut(s)	541
PscI	ACATGT	1 cut(s)	100
RsaI	GTAC	1 cut(s)	543
RsaNI	GTAC	1 cut(s)	542
RseI	CAYNNNNRTG	1 cut(s)	263
SaqAI	TTAA	5 cut(s)	35, 84, 225, 444, 456
SatI	GCNGC	1 cut(s)	413
Sau3AI	GATC	1 cut(s)	512
SfaNI	GCATC	1 cut(s)	322
SfcI	CTRYAG	2 cut(s)	508, 524
SmiMI	CAYNNNNRTG	1 cut(s)	263
SnaBI	TACGTA	1 cut(s)	541
Sse9I	AATT	2 cut(s)	119, 553
SsiI	CCGC	1 cut(s)	412
SspMI	CTAG	1 cut(s)	74
TaiI	ACGT	2 cut(s)	505, 543
TaqI	TCGA	1 cut(s)	176
TasI	AATT	2 cut(s)	119, 553
TauI	GCSGC	1 cut(s)	415
Tru1I	TTAA	5 cut(s)	35, 84, 225, 444, 456
Tru9I	TTAA	5 cut(s)	35, 84, 225, 444, 456
TseFI	GTSAC	1 cut(s)	468
Tsp45I	GTSAC	1 cut(s)	468
TspDTI	ATGAA	2 cut(s)	102, 231
XapI	RAATTY	1 cut(s)	119
XbaI	TCTAGA	1 cut(s)	73
XceI	RCATGY	1 cut(s)	104
XspI	CTAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.