Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002746

Physical Location & Seq

Genomic Coordinates Reverse (-)

7174436 .. 7178020

Gene Structure 3585 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G20550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGCTCCTAGTTCTAGGTCTCCTTCACCACGTACGAAGAGACTGAGAAGAGCTCGAGGAGAGAAGGAAATTGGGAGAAGTAGAGAGAGAGAAGATGATGGTAGAGAAAGGGAGAAGAGAAACAGTAGGGAAAGGGATAGAGATATAGGAAGAGATAGGGATAGGGAGAGAAAAGGAGAAGGAGAAAGAGATAGGGAAGTTGGGGATAAGAGAAGACGATCAGGGAGAGAGGATACTGAAAAAAGGAGAAGGACAAGAACAGATGATGAGAGATACTCTAGAGGAAGACATGAGAGGTCTACTTCACCGTCAGATAGGAGTCACAGGAGTAGTAGGCGTTCACCTGAAAGAGCTATTGCCTCAAGGCATGATGAGGGGTCTAATGCAAGAGGGGGCAGCGAGGAGCCAAATGTCGAGGAAGATTCAGTCGCGAGAATGAGAGCAGTTGAAGAGGCTCTGGCAGCGAAGAAAAAGGAAGAACCATCATTTGAGCTATCAGGGAAACTTGCTGAAGAAACTAACAGATACAGAGGTATCACACTCCTCTTCAATGAGCCCCCAGAGGCTAGAAAACCCAGCGAACGATGGAGACTGTATGTTTTTAAGGATGGTGAACCACTGAATGAGCCACTCTGCCTTCACCGCCAAAGCTGCTACCTCTTTGGACGTGAAAGAAGGATTGCCGACATTCCTACGGATCACCCATCTTGCAGCAAGCAGCATGCTGTCATTCAGTACCGGGAAATGGAAAAGGAGAAACCAGATGGTATGATGGGGAAGCAAGTGAAGCCTTACATAATGGATCTTGGTAGTACCAACAAAACTTATATCAATGAAAGTCCCATTGAGCCACAAAGATATTATGAGCTTTTTGAGAAAGACACCATAAAGTTTGGCAACAGCAGCCGAGAGTACGTACTGTTGCACGAGAATTCTGCCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008283 GO:0009507 GO:0009536 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0019222 GO:0031047 GO:0031050 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0040008 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048519 GO:0048638 GO:0050789 GO:0050793 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

314

Amino Acids

36.95

Weight (kDa)

9.45

Isoelectric Point (pI)

71.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FHA	PF00498	219 - 299	6.7e-17	FHA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24410 AT3G20550
fragaria_vesca	FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_6g43590
malus_domestica	MD03G1208700.v1.1 MD06G1125500.v1.1 MD11G1223400.v1.1
prunus_persica	Prupe.4G208000_v2.0.a1
pyrus_communis	pycom06g11580 pycom11g19700
rosa_chinensis	RchiOBHm_Chr2g0160171 RchiOBHm_Chr4g0405041 RchiOBHm_Chr5g0037921
rosa_laevigata	RLG00000008882 RLG00000021201 RLG00000033823
rosa_multiflora	Rmu_sc0001744.1_g000004 Rmu_ssc0000241.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042940 Rroxscaffold_5G00349230
rosa_rugosa	Rorug04G0052500 Rorug05G0169400 Rorug05G0169500 Rorug05G0169600
rosa_samantha	Rh2BG560700 Rh4AG127600 Rh4BG121300 Rh4CG135400 Rh4DG121700 Rh5AG257700 Rh5BG260500 Rh5CG293100
rosa_wichuraiana	Rw2G045270 Rw4G010330 Rw5G023890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	299
AccII	CGCG	1 cut(s)	431
AciI	CCGC	1 cut(s)	643
AclWI	GGATC	2 cut(s)	705, 810
AcsI	RAATTY	1 cut(s)	931
AcuI	CTGAAG	1 cut(s)	531
AfaI	GTAC	5 cut(s)	34, 737, 814, 914, 918
AfiI	CCNNNNNNNGG	1 cut(s)	745
AgsI	TTSAA	2 cut(s)	449, 550
AjiI	CACGTC	1 cut(s)	668
AluBI	AGCT	5 cut(s)	53, 353, 493, 651, 868
AluI	AGCT	5 cut(s)	53, 353, 493, 651, 868
Alw21I	GWGCWC	1 cut(s)	55
Alw26I	GTCTC	3 cut(s)	24, 34, 583
AlwI	GGATC	2 cut(s)	705, 810
Ama87I	CYCGRG	1 cut(s)	54
ApeKI	GCWGC	6 cut(s)	396, 461, 651, 711, 718, 903
ApoI	RAATTY	1 cut(s)	931
AsuC2I	CCSGG	1 cut(s)	740
AsuHPI	GGTGA	6 cut(s)	18, 297, 333, 623, 632, 692
AvaI	CYCGRG	1 cut(s)	54
BaeI	ACNNNNGTAYC	4 cut(s)	517, 517, 550, 550
BanII	GRGCYC	2 cut(s)	55, 558
BauI	CACGAG	1 cut(s)	926
BbsI	GAAGAC	2 cut(s)	220, 292
Bbv12I	GWGCWC	1 cut(s)	55
BbvI	GCAGC	6 cut(s)	408, 473, 638, 723, 730, 915
BccI	CCATC	7 cut(s)	92, 490, 579, 602, 712, 758, 766
BcgI	CGANNNNNNTGC	1 cut(s)	917
BciVI	GTATCC	1 cut(s)	226
BcnI	CCSGG	1 cut(s)	740
BcoDI	GTCTC	3 cut(s)	24, 34, 583
BfaI	CTAG	4 cut(s)	9, 15, 279, 567
BfuI	GTATCC	1 cut(s)	226
BisI	GCNGC	6 cut(s)	397, 462, 652, 712, 719, 904
BlsI	GCNGC	6 cut(s)	398, 463, 653, 713, 720, 905
Bme1390I	CCNGG	1 cut(s)	740
BmeT110I	CYCGRG	1 cut(s)	54
BmgBI	CACGTC	1 cut(s)	668
BmiI	GGNNCC	2 cut(s)	6, 405
BmrFI	CCNGG	1 cut(s)	740
BpiI	GAAGAC	2 cut(s)	220, 292
BplI	GAGNNNNNCTC	4 cut(s)	37, 69, 260, 292
BpuEI	CTTGAG	1 cut(s)	346
BpuMI	CCSGG	1 cut(s)	740
BsaAI	YACGTR	2 cut(s)	32, 916
BsaI	GGTCTC	1 cut(s)	24
Bsc4I	CCNNNNNNNGG	1 cut(s)	745
BseGI	GGATG	1 cut(s)	613
BseLI	CCNNNNNNNGG	1 cut(s)	745
BseMII	CTCAG	1 cut(s)	35
BseRI	GAGGAG	3 cut(s)	72, 416, 533
BseXI	GCAGC	6 cut(s)	408, 473, 638, 723, 730, 915
BseYI	CCCAGC	1 cut(s)	575
Bsh1236I	CGCG	1 cut(s)	431
BsiHKAI	GWGCWC	1 cut(s)	55
BsiHKCI	CYCGRG	1 cut(s)	54
BsiSI	CCGG	1 cut(s)	739
BsiWI	CGTACG	1 cut(s)	32
BslFI	GGGAC	1 cut(s)	825
BslI	CCNNNNNNNGG	1 cut(s)	745
BsmAI	GTCTC	3 cut(s)	24, 34, 583
BsmFI	GGGAC	1 cut(s)	825
Bso31I	GGTCTC	1 cut(s)	24
BsoBI	CYCGRG	1 cut(s)	54
Bsp1286I	GDGCHC	2 cut(s)	55, 558
Bsp143I	GATC	3 cut(s)	218, 697, 802
Bsp68I	TCGCGA	1 cut(s)	431
BspACI	CCGC	1 cut(s)	643
BspCNI	CTCAG	1 cut(s)	36
BspFNI	CGCG	1 cut(s)	431
BspLI	GGNNCC	2 cut(s)	6, 405
BspPI	GGATC	2 cut(s)	705, 810
BspQI	GCTCTTC	1 cut(s)	43
BspTNI	GGTCTC	1 cut(s)	24
BssMI	GATC	3 cut(s)	218, 697, 802
BssSI	CACGAG	1 cut(s)	926
Bst2BI	CACGAG	1 cut(s)	926
Bst4CI	ACNGT	4 cut(s)	125, 309, 594, 921
Bst6I	CTCTTC	6 cut(s)	32, 43, 110, 145, 444, 551
BstBAI	YACGTR	2 cut(s)	32, 916
BstC8I	GCNNGC	2 cut(s)	716, 723
BstDEI	CTNAG	1 cut(s)	44
BstF5I	GGATG	1 cut(s)	613
BstFNI	CGCG	1 cut(s)	431
BstKTI	GATC	3 cut(s)	221, 700, 805
BstMAI	GTCTC	3 cut(s)	24, 34, 583
BstMBI	GATC	3 cut(s)	218, 697, 802
BstMWI	GCNNNNNNNGC	5 cut(s)	461, 642, 651, 787, 903
BstNSI	RCATGY	1 cut(s)	725
BstSCI	CCNGG	1 cut(s)	738
BstSNI	TACGTA	1 cut(s)	916
BstUI	CGCG	1 cut(s)	431
BstV1I	GCAGC	6 cut(s)	408, 473, 638, 723, 730, 915
BstV2I	GAAGAC	2 cut(s)	220, 292
BstX2I	RGATCY	1 cut(s)	802
BstYI	RGATCY	1 cut(s)	802
BsuI	GTATCC	1 cut(s)	226
BtrI	CACGTC	1 cut(s)	668
BtsCI	GGATG	1 cut(s)	613
BtsIMutI	CAGTG	1 cut(s)	617
BtuMI	TCGCGA	1 cut(s)	431
Cac8I	GCNNGC	2 cut(s)	716, 723
Csp6I	GTAC	5 cut(s)	33, 736, 813, 913, 917
CviAII	CATG	3 cut(s)	290, 368, 722
CviQI	GTAC	5 cut(s)	33, 736, 813, 913, 917
DdeI	CTNAG	1 cut(s)	44
DpnI	GATC	3 cut(s)	220, 699, 804
DpnII	GATC	3 cut(s)	218, 697, 802
Eam1104I	CTCTTC	6 cut(s)	32, 43, 110, 145, 444, 551
EarI	CTCTTC	6 cut(s)	32, 43, 110, 145, 444, 551
Ecl136II	GAGCTC	1 cut(s)	53
Eco105I	TACGTA	1 cut(s)	916
Eco24I	GRGCYC	2 cut(s)	55, 558
Eco31I	GGTCTC	1 cut(s)	24
Eco53kI	GAGCTC	1 cut(s)	53
Eco57I	CTGAAG	1 cut(s)	531
Eco88I	CYCGRG	1 cut(s)	54
EcoICRI	GAGCTC	1 cut(s)	53
EcoRI	GAATTC	1 cut(s)	931
EcoT38I	GRGCYC	2 cut(s)	55, 558
FaeI	CATG	3 cut(s)	293, 371, 725
FaqI	GGGAC	1 cut(s)	825
FatI	CATG	3 cut(s)	289, 367, 721
FblI	GTMKAC	1 cut(s)	299
Fnu4HI	GCNGC	6 cut(s)	397, 462, 652, 712, 719, 904
FokI	GGATG	1 cut(s)	620
FriOI	GRGCYC	2 cut(s)	55, 558
Fsp4HI	GCNGC	6 cut(s)	397, 462, 652, 712, 719, 904
FspBI	CTAG	4 cut(s)	9, 15, 279, 567
GluI	GCNGC	6 cut(s)	397, 462, 652, 712, 719, 904
GsaI	CCCAGC	1 cut(s)	579
HapII	CCGG	1 cut(s)	739
Hin1II	CATG	3 cut(s)	293, 371, 725
HinfI	GANTC	2 cut(s)	319, 422
HpaII	CCGG	1 cut(s)	739
HphI	GGTGA	6 cut(s)	18, 297, 333, 623, 632, 692
Hpy166II	GTNNAC	3 cut(s)	300, 341, 614
Hpy188I	TCNGA	1 cut(s)	313
Hpy188III	TCNNGA	2 cut(s)	279, 430
Hpy8I	GTNNAC	3 cut(s)	300, 341, 614
HpyAV	CCTTC	6 cut(s)	33, 58, 173, 243, 647, 669
HpyCH4III	ACNGT	4 cut(s)	125, 309, 594, 921
HpyCH4IV	ACGT	3 cut(s)	31, 667, 915
HpyCH4V	TGCA	3 cut(s)	386, 711, 925
HpyF10VI	GCNNNNNNNGC	5 cut(s)	461, 642, 651, 787, 903
HpyF3I	CTNAG	1 cut(s)	44
HpySE526I	ACGT	3 cut(s)	31, 667, 915
Hsp92II	CATG	3 cut(s)	293, 371, 725
Kzo9I	GATC	3 cut(s)	218, 697, 802
LguI	GCTCTTC	1 cut(s)	43
LmnI	GCTCC	2 cut(s)	10, 403
LpnPI	CCDG	9 cut(s)	207, 310, 357, 443, 483, 573, 589, 752, 774
Lsp1109I	GCAGC	6 cut(s)	408, 473, 638, 723, 730, 915
MaeI	CTAG	4 cut(s)	9, 15, 279, 567
MaeII	ACGT	3 cut(s)	31, 667, 915
MaeIII	GTNAC	1 cut(s)	320
MalI	GATC	3 cut(s)	220, 699, 804
MboI	GATC	3 cut(s)	218, 697, 802
MflI	RGATCY	1 cut(s)	802
MhlI	GDGCHC	2 cut(s)	55, 558
MluCI	AATT	2 cut(s)	69, 931
MlyI	GAGTC	1 cut(s)	328
MseI	TTAA	1 cut(s)	603
MspI	CCGG	1 cut(s)	739
MspR9I	CCNGG	1 cut(s)	740
MvnI	CGCG	1 cut(s)	431
MwoI	GCNNNNNNNGC	5 cut(s)	461, 642, 651, 787, 903
NciI	CCSGG	1 cut(s)	740
NdeII	GATC	3 cut(s)	218, 697, 802
NlaIII	CATG	3 cut(s)	293, 371, 725
NlaIV	GGNNCC	2 cut(s)	6, 405
NmeAIII	GCCGAG	1 cut(s)	932
NmuCI	GTSAC	1 cut(s)	320
NruI	TCGCGA	1 cut(s)	431
NspI	RCATGY	1 cut(s)	725
PaeI	GCATGC	1 cut(s)	725
PaeR7I	CTCGAG	1 cut(s)	54
PciSI	GCTCTTC	1 cut(s)	43
PfeI	GAWTC	1 cut(s)	422
Pfl23II	CGTACG	1 cut(s)	32
PkrI	GCNGC	6 cut(s)	398, 463, 653, 713, 720, 905
PleI	GAGTC	1 cut(s)	327
PpsI	GAGTC	1 cut(s)	327
Ppu21I	YACGTR	2 cut(s)	32, 916
Psp124BI	GAGCTC	1 cut(s)	55
PspFI	CCCAGC	1 cut(s)	575
PspLI	CGTACG	1 cut(s)	32
PspN4I	GGNNCC	2 cut(s)	6, 405
PspXI	VCTCGAGB	1 cut(s)	54
PsrI	GAACNNNNNNTAC	2 cut(s)	322, 354
PsuI	RGATCY	1 cut(s)	802
RruI	TCGCGA	1 cut(s)	431
RsaI	GTAC	5 cut(s)	34, 737, 814, 914, 918
RsaNI	GTAC	5 cut(s)	33, 736, 813, 913, 917
SacI	GAGCTC	1 cut(s)	55
SapI	GCTCTTC	1 cut(s)	43
SaqAI	TTAA	1 cut(s)	603
SatI	GCNGC	6 cut(s)	397, 462, 652, 712, 719, 904
Sau3AI	GATC	3 cut(s)	218, 697, 802
SchI	GAGTC	1 cut(s)	328
ScrFI	CCNGG	1 cut(s)	740
SduI	GDGCHC	2 cut(s)	55, 558
Sfr274I	CTCGAG	1 cut(s)	54
SlaI	CTCGAG	1 cut(s)	54
SmlI	CTYRAG	2 cut(s)	54, 361
SmoI	CTYRAG	2 cut(s)	54, 361
SnaBI	TACGTA	1 cut(s)	916
SphI	GCATGC	1 cut(s)	725
Sse9I	AATT	2 cut(s)	69, 931
SsiI	CCGC	1 cut(s)	643
SspMI	CTAG	4 cut(s)	9, 15, 279, 567
SstI	GAGCTC	1 cut(s)	55
StyD4I	CCNGG	1 cut(s)	738
TaaI	ACNGT	4 cut(s)	125, 309, 594, 921
TaiI	ACGT	3 cut(s)	34, 670, 918
TaqI	TCGA	2 cut(s)	55, 414
TasI	AATT	2 cut(s)	69, 931
TfiI	GAWTC	1 cut(s)	422
Tru1I	TTAA	1 cut(s)	603
Tru9I	TTAA	1 cut(s)	603
TscAI	CASTG	1 cut(s)	624
TseFI	GTSAC	1 cut(s)	320
TseI	GCWGC	6 cut(s)	396, 461, 651, 711, 718, 903
Tsp45I	GTSAC	1 cut(s)	320
TspDTI	ATGAA	1 cut(s)	849
TspGWI	ACGGA	1 cut(s)	710
TspRI	CASTG	1 cut(s)	624
XapI	RAATTY	1 cut(s)	931
XbaI	TCTAGA	1 cut(s)	278
XceI	RCATGY	1 cut(s)	725
XhoI	CTCGAG	1 cut(s)	54
XmiI	GTMKAC	1 cut(s)	299
XspI	CTAG	4 cut(s)	9, 15, 279, 567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.