Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0002746

Physical Location & Seq

Genomic Coordinates Forward (+)

22221710 .. 22226519

Gene Structure 4810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g19700.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGGGGCGTAGCGTTTCAAATCATTCAGAAGAATCTCCTGTTGGAGAGCATGGGTCTCCTTGTCGTAGGAGGAGCCCATCTAGGAAGATTCCATCTCAAATAGAAAGATCACCTACTCGACATAGGAGGTCCCACAGGGGTAGTCCTCCAGCAAGAGAGAAACATTCGAGTCACCCTAAGTCTCCGAAGCATGCAAGGTCCCCGTCTCATCCTGGTCGCTCTCCTTCTCCCCGAACAAGACGGTTAAGAAGAGCTCAAGCTGAAAGAGAGGCTGAGAGAGAACCTGAAAAGAACAATGGGAGGGGAGCTGATAGGGATTTACAGAAGGAAGGGGGTTCAGTGAGAGATGTTGGGAGCAATAGAAAGGAGAGACGGTCGGGAAGAGATGATACTTCACCGTCAGATCGACAGCGCAGGAGTAAGCATCGATCTTCCTCACCTCAACCTGCTGGTGATACTAGAGGTGAGGAGAAAGTAATTGAGAAAGAACGTGAAAGGAATCATGGCAGAGGAAGTGTTAGAAGTATGCAAAGGGAAAAGGGTTCAGATAGGGAAACTGAGAGTGACAGAGTGGAGAGAAAGTCAGGAAAAGACAGTGCTGATCGATCTTCAAGATCAAGACATGGGCGGTCTACGTCTCCATTAGATCGGCACCACAAGAACAGACATAGATCTCATTCACCTCAACAAGCTGCCAATACCAGAATTCGTGATGAGGTGCCAAATTCAAGAGGAGCTGAGCAAGGGGATGCTGAGAATGATGCAGTAGCAATGATGAAGGCTGCAGAGGAAGCCTTGGAAGCAAAGCAAAAGCAAAAACCTTCATTTGAGCTATCTGGGAAGCTTGCTGCGGAAACCAATAGAGTCAATGGTGTAACGCTATTATCCACCGAGCCTCCAGAAGGACGAAAACCTACTGTGAGATGGCGGCTTTATGTTTTCAAGGGTGGTGAAGTTTTGAAAGACCCCCTTTACATACATCGTCAAAGCTGTTACCTTTTTGGGAGGGAAAGAAGGGTGGCAGACATACCTACAGATCACCCATCCTGCAGCAAGCAACATGCTGTTATACAATACCGCCAAGTTGAAAAGGAGCAACCAGATGGTATGTTATCAAAGGAAGTAAGGCCTTACTTGATGGATCTTGGAAGCACAAATAAAACTTTTCTCAATGAAAATGCAATCGAACCTCAACGATATTATGAACTCATGGAAAAGGATACAATCAAATTTGGTAATAGTAGCCGAGAGTATGTTCTGCTGCACGAAAACTCGATGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008283 GO:0009507 GO:0009536 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0019222 GO:0031047 GO:0031050 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0040008 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048519 GO:0048638 GO:0050789 GO:0050793 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

428

Amino Acids

48.74

Weight (kDa)

10.16

Isoelectric Point (pI)

73.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24410 AT3G20550
fragaria_vesca	FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_6g43590
malus_domestica	MD03G1208700.v1.1 MD06G1125500.v1.1 MD11G1223400.v1.1
prunus_persica	Prupe.4G208000_v2.0.a1
pyrus_communis	pycom06g11580 pycom11g19700
rosa_chinensis	RchiOBHm_Chr2g0160171 RchiOBHm_Chr4g0405041 RchiOBHm_Chr5g0037921
rosa_laevigata	RLG00000008882 RLG00000021201 RLG00000033823
rosa_multiflora	Rmu_sc0001744.1_g000004 Rmu_ssc0000241.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042940 Rroxscaffold_5G00349230
rosa_rugosa	Rorug04G0052500 Rorug05G0169400 Rorug05G0169500 Rorug05G0169600
rosa_samantha	Rh2BG560700 Rh4AG127600 Rh4BG121300 Rh4CG135400 Rh4DG121700 Rh5AG257700 Rh5BG260500 Rh5CG293100
rosa_wichuraiana	Rw2G045270 Rw4G010330 Rw5G023890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	454
AccB1I	GGYRCC	2 cut(s)	651, 718
AccI	GTMKAC	1 cut(s)	632
AciI	CCGC	4 cut(s)	628, 851, 928, 1078
AclWI	GGATC	1 cut(s)	1149
AcsI	RAATTY	3 cut(s)	705, 724, 1229
AfiI	CCNNNNNNNGG	1 cut(s)	902
AgsI	TTSAA	6 cut(s)	18, 612, 729, 943, 961, 1088
AjnI	CCWGG	1 cut(s)	211
AjuI	GAANNNNNNNTTGG	2 cut(s)	24, 56
AluBI	AGCT	8 cut(s)	254, 260, 308, 692, 737, 832, 844, 990
AluI	AGCT	8 cut(s)	254, 260, 308, 692, 737, 832, 844, 990
Alw21I	GWGCWC	1 cut(s)	256
Alw26I	GTCTC	5 cut(s)	60, 186, 210, 364, 642
AlwI	GGATC	1 cut(s)	1149
AoxI	GGCC	1 cut(s)	1127
ApeKI	GCWGC	5 cut(s)	692, 782, 848, 1050, 1261
ApoI	RAATTY	3 cut(s)	705, 724, 1229
AspLEI	GCGC	1 cut(s)	414
AspS9I	GGNCC	2 cut(s)	129, 198
AsuHPI	GGTGA	9 cut(s)	102, 164, 387, 429, 464, 476, 672, 962, 1031
AvaII	GGWCC	2 cut(s)	129, 198
BanI	GGYRCC	2 cut(s)	651, 718
BanII	GRGCYC	2 cut(s)	77, 256
BarI	GAAGNNNNNNTAC	2 cut(s)	373, 405
Bbv12I	GWGCWC	1 cut(s)	256
BbvI	GCAGC	5 cut(s)	679, 769, 835, 1062, 1248
BccI	CCATC	7 cut(s)	85, 100, 918, 1051, 1097, 1132, 1270
BciT130I	CCWGG	1 cut(s)	213
BciVI	GTATCC	1 cut(s)	1213
BcoDI	GTCTC	5 cut(s)	60, 186, 210, 364, 642
BfaI	CTAG	2 cut(s)	81, 459
BfmI	CTRYAG	3 cut(s)	783, 1032, 1048
BfuAI	ACCTGC	1 cut(s)	454
BfuI	GTATCC	1 cut(s)	1213
BglII	AGATCT	1 cut(s)	671
BisI	GCNGC	6 cut(s)	693, 783, 849, 929, 1051, 1262
BlpI	GCTNAGC	1 cut(s)	738
BlsI	GCNGC	6 cut(s)	694, 784, 850, 930, 1052, 1263
Bme1390I	CCNGG	1 cut(s)	213
Bme18I	GGWCC	2 cut(s)	129, 198
BmgT120I	GGNCC	2 cut(s)	129, 198
BmiI	GGNNCC	5 cut(s)	74, 131, 200, 653, 720
BmrFI	CCNGG	1 cut(s)	213
BmsI	GCATC	3 cut(s)	433, 739, 751
BpmI	CTGGAG	2 cut(s)	132, 882
Bpu1102I	GCTNAGC	1 cut(s)	738
BpuEI	CTTGAG	1 cut(s)	240
Bsa29I	ATCGAT	2 cut(s)	427, 604
BsaI	GGTCTC	1 cut(s)	60
BsaJI	CCNNGG	1 cut(s)	795
BsaXI	ACNNNNNCTCC	6 cut(s)	359, 389, 566, 596, 880, 910
Bsc4I	CCNNNNNNNGG	1 cut(s)	902
Bse3DI	GCAATG	1 cut(s)	777
BseBI	CCWGG	1 cut(s)	213
BseCI	ATCGAT	2 cut(s)	427, 604
BseDI	CCNNGG	1 cut(s)	795
BseGI	GGATG	3 cut(s)	208, 754, 1043
BseLI	CCNNNNNNNGG	1 cut(s)	902
BseMI	GCAATG	1 cut(s)	777
BseMII	CTCAG	4 cut(s)	264, 549, 729, 744
BseRI	GAGGAG	3 cut(s)	85, 482, 747
BseXI	GCAGC	5 cut(s)	679, 769, 835, 1062, 1248
BsgI	GTGCAG	1 cut(s)	1247
Bsh1285I	CGRYCG	1 cut(s)	377
BshFI	GGCC	1 cut(s)	1129
BshNI	GGYRCC	2 cut(s)	651, 718
BshVI	ATCGAT	2 cut(s)	427, 604
BsiEI	CGRYCG	1 cut(s)	377
BsiHKAI	GWGCWC	1 cut(s)	256
BslFI	GGGAC	2 cut(s)	115, 184
BslI	CCNNNNNNNGG	1 cut(s)	902
BsmAI	GTCTC	5 cut(s)	60, 186, 210, 364, 642
BsmBI	CGTCTC	3 cut(s)	210, 364, 642
BsmFI	GGGAC	2 cut(s)	115, 184
BsnI	GGCC	1 cut(s)	1129
Bso31I	GGTCTC	1 cut(s)	60
Bsp1286I	GDGCHC	2 cut(s)	77, 256
Bsp1720I	GCTNAGC	1 cut(s)	738
BspACI	CCGC	4 cut(s)	628, 851, 928, 1078
BspANI	GGCC	1 cut(s)	1129
BspCNI	CTCAG	4 cut(s)	265, 550, 730, 745
BspDI	ATCGAT	2 cut(s)	427, 604
BspLI	GGNNCC	5 cut(s)	74, 131, 200, 653, 720
BspMAI	CTGCAG	2 cut(s)	787, 1052
BspMI	ACCTGC	1 cut(s)	454
BspPI	GGATC	1 cut(s)	1149
BspQI	GCTCTTC	1 cut(s)	244
BspT107I	GGYRCC	2 cut(s)	651, 718
BspTNI	GGTCTC	1 cut(s)	60
BsrDI	GCAATG	1 cut(s)	777
BssECI	CCNNGG	1 cut(s)	795
BssT1I	CCWWGG	1 cut(s)	795
Bst2UI	CCWGG	1 cut(s)	213
Bst4CI	ACNGT	5 cut(s)	243, 375, 399, 596, 919
Bst6I	CTCTTC	2 cut(s)	244, 376
BstC8I	GCNNGC	3 cut(s)	192, 846, 1055
BstDEI	CTNAG	5 cut(s)	177, 273, 558, 738, 753
BstENI	CCTNNNNNAGG	1 cut(s)	900
BstF5I	GGATG	3 cut(s)	208, 754, 1043
BstHHI	GCGC	1 cut(s)	414
BstMAI	GTCTC	5 cut(s)	60, 186, 210, 364, 642
BstMCI	CGRYCG	1 cut(s)	377
BstMWI	GCNNNNNNNGC	2 cut(s)	791, 800
BstNI	CCWGG	1 cut(s)	213
BstNSI	RCATGY	2 cut(s)	194, 1064
BstSCI	CCNGG	1 cut(s)	211
BstSFI	CTRYAG	3 cut(s)	783, 1032, 1048
BstV1I	GCAGC	5 cut(s)	679, 769, 835, 1062, 1248
BstX2I	RGATCY	2 cut(s)	671, 1141
BstYI	RGATCY	2 cut(s)	671, 1141
Bsu15I	ATCGAT	2 cut(s)	427, 604
BsuI	GTATCC	1 cut(s)	1213
BsuRI	GGCC	1 cut(s)	1129
BsuTUI	ATCGAT	2 cut(s)	427, 604
BtsCI	GGATG	3 cut(s)	208, 754, 1043
BtsIMutI	CAGTG	2 cut(s)	345, 601
BveI	ACCTGC	1 cut(s)	454
Cac8I	GCNNGC	3 cut(s)	192, 846, 1055
CfoI	GCGC	1 cut(s)	414
Cfr13I	GGNCC	2 cut(s)	129, 198
ClaI	ATCGAT	2 cut(s)	427, 604
CviAII	CATG	6 cut(s)	50, 191, 503, 623, 1061, 1210
DdeI	CTNAG	5 cut(s)	177, 273, 558, 738, 753
Eam1104I	CTCTTC	2 cut(s)	244, 376
EarI	CTCTTC	2 cut(s)	244, 376
Ecl136II	GAGCTC	1 cut(s)	254
Eco130I	CCWWGG	1 cut(s)	795
Eco147I	AGGCCT	1 cut(s)	1129
Eco24I	GRGCYC	2 cut(s)	77, 256
Eco31I	GGTCTC	1 cut(s)	60
Eco47I	GGWCC	2 cut(s)	129, 198
Eco53kI	GAGCTC	1 cut(s)	254
EcoICRI	GAGCTC	1 cut(s)	254
EcoNI	CCTNNNNNAGG	1 cut(s)	900
EcoO109I	RGGNCCY	2 cut(s)	129, 198
EcoRI	GAATTC	1 cut(s)	705
EcoRII	CCWGG	1 cut(s)	211
EcoT14I	CCWWGG	1 cut(s)	795
EcoT38I	GRGCYC	2 cut(s)	77, 256
ErhI	CCWWGG	1 cut(s)	795
Esp3I	CGTCTC	3 cut(s)	210, 364, 642
FaeI	CATG	6 cut(s)	53, 194, 506, 626, 1064, 1213
FalI	AAGNNNNNCTT	2 cut(s)	954, 986
FaqI	GGGAC	2 cut(s)	115, 184
FatI	CATG	6 cut(s)	49, 190, 502, 622, 1060, 1209
FblI	GTMKAC	1 cut(s)	632
Fnu4HI	GCNGC	6 cut(s)	693, 783, 849, 929, 1051, 1262
FokI	GGATG	3 cut(s)	195, 761, 1030
FriOI	GRGCYC	2 cut(s)	77, 256
Fsp4HI	GCNGC	6 cut(s)	693, 783, 849, 929, 1051, 1262
FspBI	CTAG	2 cut(s)	81, 459
GlaI	GCGC	1 cut(s)	413
GluI	GCNGC	6 cut(s)	693, 783, 849, 929, 1051, 1262
GsuI	CTGGAG	2 cut(s)	132, 882
HaeIII	GGCC	1 cut(s)	1129
HhaI	GCGC	1 cut(s)	414
Hin1II	CATG	6 cut(s)	53, 194, 506, 626, 1064, 1213
Hin6I	GCGC	1 cut(s)	412
HinP1I	GCGC	1 cut(s)	412
HindIII	AAGCTT	1 cut(s)	842
HinfI	GANTC	5 cut(s)	32, 88, 169, 499, 864
HphI	GGTGA	9 cut(s)	102, 164, 387, 429, 464, 476, 672, 962, 1031
Hpy166II	GTNNAC	1 cut(s)	633
Hpy188I	TCNGA	4 cut(s)	28, 186, 403, 547
Hpy188III	TCNNGA	7 cut(s)	378, 585, 612, 618, 710, 729, 899
Hpy8I	GTNNAC	1 cut(s)	633
HpyAV	CCTTC	7 cut(s)	234, 319, 323, 772, 831, 896, 1008
HpyCH4III	ACNGT	5 cut(s)	243, 375, 399, 596, 919
HpyCH4IV	ACGT	2 cut(s)	490, 635
HpyCH4V	TGCA	7 cut(s)	194, 529, 764, 785, 1050, 1181, 1264
HpyF10VI	GCNNNNNNNGC	2 cut(s)	791, 800
HpyF3I	CTNAG	5 cut(s)	177, 273, 558, 738, 753
HpySE526I	ACGT	2 cut(s)	490, 635
Hsp92II	CATG	6 cut(s)	53, 194, 506, 626, 1064, 1213
HspAI	GCGC	1 cut(s)	412
LguI	GCTCTTC	1 cut(s)	244
LmnI	GCTCC	5 cut(s)	72, 305, 354, 734, 1093
Lsp1109I	GCAGC	5 cut(s)	679, 769, 835, 1062, 1248
LweI	GCATC	3 cut(s)	433, 739, 751
MaeI	CTAG	2 cut(s)	81, 459
MaeII	ACGT	2 cut(s)	490, 635
MaeIII	GTNAC	4 cut(s)	170, 563, 874, 992
MboII	GAAGA	6 cut(s)	41, 97, 261, 393, 423, 600
MflI	RGATCY	2 cut(s)	671, 1141
MhlI	GDGCHC	2 cut(s)	77, 256
MluCI	AATT	4 cut(s)	477, 705, 724, 1229
MlyI	GAGTC	2 cut(s)	178, 873
MmeI	TCCRAC	1 cut(s)	22
MseI	TTAA	1 cut(s)	245
MspR9I	CCNGG	1 cut(s)	213
MvaI	CCWGG	1 cut(s)	213
MwoI	GCNNNNNNNGC	2 cut(s)	791, 800
NlaIII	CATG	6 cut(s)	53, 194, 506, 626, 1064, 1213
NlaIV	GGNNCC	5 cut(s)	74, 131, 200, 653, 720
NmeAIII	GCCGAG	1 cut(s)	1271
NmuCI	GTSAC	2 cut(s)	170, 563
NspI	RCATGY	2 cut(s)	194, 1064
PaeI	GCATGC	1 cut(s)	194
PceI	AGGCCT	1 cut(s)	1129
PciSI	GCTCTTC	1 cut(s)	244
PfeI	GAWTC	3 cut(s)	32, 88, 499
PkrI	GCNGC	6 cut(s)	694, 784, 850, 930, 1052, 1263
PleI	GAGTC	2 cut(s)	177, 872
PpsI	GAGTC	2 cut(s)	177, 872
PpuMI	RGGWCCY	2 cut(s)	129, 198
Psp124BI	GAGCTC	1 cut(s)	256
Psp5II	RGGWCCY	2 cut(s)	129, 198
Psp6I	CCWGG	1 cut(s)	211
PspGI	CCWGG	1 cut(s)	211
PspN4I	GGNNCC	5 cut(s)	74, 131, 200, 653, 720
PspPI	GGNCC	2 cut(s)	129, 198
PspPPI	RGGWCCY	2 cut(s)	129, 198
PstI	CTGCAG	2 cut(s)	787, 1052
PsuI	RGATCY	2 cut(s)	671, 1141
SacI	GAGCTC	1 cut(s)	256
SapI	GCTCTTC	1 cut(s)	244
SaqAI	TTAA	1 cut(s)	245
SatI	GCNGC	6 cut(s)	693, 783, 849, 929, 1051, 1262
Sau96I	GGNCC	2 cut(s)	129, 198
SchI	GAGTC	2 cut(s)	178, 873
ScrFI	CCNGG	1 cut(s)	213
SduI	GDGCHC	2 cut(s)	77, 256
SfaNI	GCATC	3 cut(s)	433, 739, 751
SfcI	CTRYAG	3 cut(s)	783, 1032, 1048
SinI	GGWCC	2 cut(s)	129, 198
SmlI	CTYRAG	1 cut(s)	255
SmoI	CTYRAG	1 cut(s)	255
SphI	GCATGC	1 cut(s)	194
Sse9I	AATT	4 cut(s)	477, 705, 724, 1229
SseBI	AGGCCT	1 cut(s)	1129
SsiI	CCGC	4 cut(s)	628, 851, 928, 1078
SspMI	CTAG	2 cut(s)	81, 459
SstI	GAGCTC	1 cut(s)	256
StuI	AGGCCT	1 cut(s)	1129
StyD4I	CCNGG	1 cut(s)	211
StyI	CCWWGG	1 cut(s)	795
TaaI	ACNGT	5 cut(s)	243, 375, 399, 596, 919
TaiI	ACGT	2 cut(s)	493, 638
TaqI	TCGA	7 cut(s)	118, 167, 406, 427, 604, 1185, 1274
TasI	AATT	4 cut(s)	477, 705, 724, 1229
TauI	GCSGC	1 cut(s)	931
TfiI	GAWTC	3 cut(s)	32, 88, 499
Tru1I	TTAA	1 cut(s)	245
Tru9I	TTAA	1 cut(s)	245
TscAI	CASTG	2 cut(s)	345, 601
TseFI	GTSAC	2 cut(s)	170, 563
TseI	GCWGC	5 cut(s)	692, 782, 848, 1050, 1261
Tsp45I	GTSAC	2 cut(s)	170, 563
TspDTI	ATGAA	4 cut(s)	791, 813, 1188, 1218
TspRI	CASTG	2 cut(s)	345, 601
VpaK11BI	GGWCC	2 cut(s)	129, 198
XagI	CCTNNNNNAGG	1 cut(s)	900
XapI	RAATTY	3 cut(s)	705, 724, 1229
XceI	RCATGY	2 cut(s)	194, 1064
XmiI	GTMKAC	1 cut(s)	632
XspI	CTAG	2 cut(s)	81, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.