Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002746

Physical Location & Seq

Genomic Coordinates Forward (+)

26797472 .. 26805533

Gene Structure 8062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG135400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1386 bp

ATGACTTCTAAGTCTTTACAAGGTAGTCAGTTTGTTTCTCACGTTATGTTTGTCAGGAGAAGGCTGCATGGGCATTTGAAAAGTTCCTTGATGGGGCGTAATCTAAAAAATCATTCCAAATCTCCAGTACGTGACCATGGATCTCCTCCTAGAAGGAGCCCTTATAGGAAGAGTCAATCTCGAACAGAAAGATCACCTAATCAACATAGAAAGTCCCAGAGAGGCAGTTCTCCCGTTGTAGTGAAGCATTTAAGTCGCCCCAAGTCTCCCAAGCATGCAAGGTCGCCCACTCCTCCTCCTCGCTCTCCTTCTCCTCGCACCAAATGGTTAAGAAGAGCTCAAGCTGGAAGAGTGCCTGAGAGAGAACATGAAAGGAAGAATGGTAGGGGGATCGGTAGGGATTTACAGGAGGGGGGTCCAGAGAGAGAAGTTGGGAGTGATAGAAATGAGAAATTGTCGGGAAGGGATCATACCAATGGTAAATCTTCAAGATCAAGGCATGATACCTCTCCATCAGATCGACACCGGAGGAGTAGGCATAGATCTCCCTCACCTCAACATCCGGATGAAACAAAATATGGAGATAAAGTAATTGAGGGCCATGAAAGAAATCATCACAGAGGGAGTGATAGAAGTATGCAAAGGGCAAAGGGCTCAGATAGGGAAAATGAGACTGAAGGAATGGAGAGAGGGACAGAAAAAGACAGTTCTGGTCATAGGTCTTCAAGATCGAGACATGGGGAGTCTACTTCACCATTGAATGGACACCAGAAGAAAAAACACAAAACTCAGTCGCCTCAACAAGCTGCAGATACCAGAGCTCACTATGAGGTACCAGAGTCAAGGGAAGCTGAGCATGGGATTGATGAGAATGATTCAGTAGCAATGATGAGAGCTGCTGAGGAGGCCTTGGAAGCACAGAAAAAGCAAAAACCTTCGTTTGAGCTATCTGGAAAGCTTGCTGCGGAAACCAATAGATTCAGGGGTATAACACTATTATACACTGAGCCAGCAGAAGGACGGCCACCTCGTGTAAAATGGCGGCTTTATGTTTTTAAGGGTGGTGAAGCTTTTAATGAACCCATGAAGATACATCGCCAAAGCTGTTACCTTTTCGGGAGGGAAAGAAGGGTGGCAGACATCCCTACGGATCACCCATCCTGCAGCAAGCAACATGCTGTTCTACAATTCCGGCAAGTAGAAAAGGAGCAACCAGATGGTACATTGTCAAAGGAAGTCAAGCCTTACGTAATGGATCTTGGAAGCACAAATAAAACTTTTGTCAATGAAACTGCAATTGAACCTCAGCGATATTATGAACTTATGGAAAAAGACACGATTAAATTTGGTAATAGTAGGTTAGTCACTGATCTATATCCACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008283 GO:0009507 GO:0009536 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0019222 GO:0031047 GO:0031050 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0040008 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048519 GO:0048638 GO:0050789 GO:0050793 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

461

Amino Acids

52.77

Weight (kDa)

10.26

Isoelectric Point (pI)

65.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FHA	PF00498	370 - 450	1.2e-15	FHA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24410 AT3G20550
fragaria_vesca	FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_6g43590
malus_domestica	MD03G1208700.v1.1 MD06G1125500.v1.1 MD11G1223400.v1.1
prunus_persica	Prupe.4G208000_v2.0.a1
pyrus_communis	pycom06g11580 pycom11g19700
rosa_chinensis	RchiOBHm_Chr2g0160171 RchiOBHm_Chr4g0405041 RchiOBHm_Chr5g0037921
rosa_laevigata	RLG00000008882 RLG00000021201 RLG00000033823
rosa_multiflora	Rmu_sc0001744.1_g000004 Rmu_ssc0000241.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042940 Rroxscaffold_5G00349230
rosa_rugosa	Rorug04G0052500 Rorug05G0169400 Rorug05G0169500 Rorug05G0169600
rosa_samantha	Rh2BG560700 Rh4AG127600 Rh4BG121300 Rh4CG135400 Rh4DG121700 Rh5AG257700 Rh5BG260500 Rh5CG293100
rosa_wichuraiana	Rw2G045270 Rw4G010330 Rw5G023890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	10
Acc65I	GGTACC	1 cut(s)	832
AccB1I	GGYRCC	1 cut(s)	832
AccB7I	CCANNNNNTGG	1 cut(s)	761
AccI	GTMKAC	1 cut(s)	746
AccIII	TCCGGA	1 cut(s)	562
AciI	CCGC	2 cut(s)	965, 1042
AclWI	GGATC	5 cut(s)	148, 398, 474, 1158, 1263
AcoI	YGGCCR	1 cut(s)	1022
AcsI	RAATTY	1 cut(s)	1343
AcuI	CTGAAG	1 cut(s)	696
AdeI	CACNNNGTG	1 cut(s)	1031
AfaI	GTAC	3 cut(s)	129, 834, 1222
AfiI	CCNNNNNNNGG	3 cut(s)	93, 761, 1016
AgsI	TTSAA	5 cut(s)	79, 489, 726, 760, 1301
Alw21I	GWGCWC	2 cut(s)	340, 823
Alw26I	GTCTC	3 cut(s)	270, 665, 727
AlwI	GGATC	5 cut(s)	148, 398, 474, 1158, 1263
Aor13HI	TCCGGA	1 cut(s)	562
AoxI	GGCC	3 cut(s)	598, 906, 1022
ApeKI	GCWGC	5 cut(s)	64, 806, 896, 962, 1164
ApoI	RAATTY	1 cut(s)	1343
Asp718I	GGTACC	1 cut(s)	832
AspS9I	GGNCC	2 cut(s)	416, 598
AsuHPI	GGTGA	5 cut(s)	186, 543, 744, 1076, 1145
AvaII	GGWCC	1 cut(s)	416
BaeI	ACNNNNGTAYC	2 cut(s)	824, 857
BanI	GGYRCC	1 cut(s)	832
BanII	GRGCYC	4 cut(s)	161, 340, 656, 823
BarI	GAAGNNNNNNTAC	2 cut(s)	454, 486
BauI	CACGAG	1 cut(s)	1029
BbsI	GAAGAC	1 cut(s)	714
Bbv12I	GWGCWC	2 cut(s)	340, 823
BbvCI	CCTCAGC	2 cut(s)	900, 1305
BbvI	GCAGC	5 cut(s)	51, 793, 883, 949, 1176
BccI	CCATC	4 cut(s)	85, 520, 1165, 1211
BceAI	ACGGC	1 cut(s)	1037
BcgI	CGANNNNNNTGC	2 cut(s)	236, 270
BcoDI	GTCTC	3 cut(s)	270, 665, 727
BfaI	CTAG	1 cut(s)	150
BfmI	CTRYAG	2 cut(s)	807, 1162
BglII	AGATCT	1 cut(s)	542
BisI	GCNGC	6 cut(s)	65, 807, 897, 963, 1043, 1165
BlpI	GCTNAGC	1 cut(s)	852
BlsI	GCNGC	6 cut(s)	66, 808, 898, 964, 1044, 1166
Bme18I	GGWCC	1 cut(s)	416
BmgT120I	GGNCC	2 cut(s)	416, 598
BmiI	GGNNCC	3 cut(s)	158, 417, 834
BpiI	GAAGAC	1 cut(s)	714
BplI	GAGNNNNNCTC	2 cut(s)	163, 195
BpmI	CTGGAG	1 cut(s)	108
Bpu10I	CCTNAGC	2 cut(s)	900, 1305
Bpu1102I	GCTNAGC	1 cut(s)	852
BpuEI	CTTGAG	1 cut(s)	324
BsaAI	YACGTR	2 cut(s)	131, 1249
BsaBI	GATNNNNATC	1 cut(s)	1374
BsaJI	CCNNGG	2 cut(s)	136, 909
BsaWI	WCCGGW	2 cut(s)	525, 562
BsaXI	ACNNNNNCTCC	4 cut(s)	280, 310, 573, 603
Bsc4I	CCNNNNNNNGG	3 cut(s)	93, 761, 1016
Bse1I	ACTGG	1 cut(s)	125
Bse3DI	GCAATG	1 cut(s)	891
Bse8I	GATNNNNATC	1 cut(s)	1374
BseAI	TCCGGA	1 cut(s)	562
BseDI	CCNNGG	2 cut(s)	136, 909
BseGI	GGATG	4 cut(s)	559, 571, 1140, 1157
BseJI	GATNNNNATC	1 cut(s)	1374
BseLI	CCNNNNNNNGG	3 cut(s)	93, 761, 1016
BseMI	GCAATG	1 cut(s)	891
BseMII	CTCAG	7 cut(s)	348, 669, 803, 843, 891, 996, 1319
BseNI	ACTGG	1 cut(s)	125
BseRI	GAGGAG	7 cut(s)	135, 282, 285, 288, 303, 544, 917
BseXI	GCAGC	5 cut(s)	51, 793, 883, 949, 1176
BshFI	GGCC	3 cut(s)	600, 908, 1024
BshNI	GGYRCC	1 cut(s)	832
BsiHKAI	GWGCWC	2 cut(s)	340, 823
BsiSI	CCGG	3 cut(s)	526, 563, 1192
BslFI	GGGAC	2 cut(s)	199, 706
BslI	CCNNNNNNNGG	3 cut(s)	93, 761, 1016
BsmAI	GTCTC	3 cut(s)	270, 665, 727
BsmFI	GGGAC	2 cut(s)	199, 706
BsnI	GGCC	3 cut(s)	600, 908, 1024
Bsp1286I	GDGCHC	4 cut(s)	161, 340, 656, 823
Bsp13I	TCCGGA	1 cut(s)	562
Bsp1720I	GCTNAGC	1 cut(s)	852
Bsp19I	CCATGG	1 cut(s)	136
BspACI	CCGC	2 cut(s)	965, 1042
BspANI	GGCC	3 cut(s)	600, 908, 1024
BspCNI	CTCAG	7 cut(s)	349, 668, 802, 844, 892, 997, 1318
BspEI	TCCGGA	1 cut(s)	562
BspLI	GGNNCC	3 cut(s)	158, 417, 834
BspMAI	CTGCAG	2 cut(s)	811, 1166
BspPI	GGATC	5 cut(s)	148, 398, 474, 1158, 1263
BspQI	GCTCTTC	1 cut(s)	328
BspT107I	GGYRCC	1 cut(s)	832
BsrDI	GCAATG	1 cut(s)	891
BsrI	ACTGG	1 cut(s)	125
BssECI	CCNNGG	2 cut(s)	136, 909
BssSI	CACGAG	1 cut(s)	1029
BssT1I	CCWWGG	2 cut(s)	136, 909
Bst2BI	CACGAG	1 cut(s)	1029
Bst4CI	ACNGT	1 cut(s)	707
Bst6I	CTCTTC	3 cut(s)	164, 328, 343
BstBAI	YACGTR	2 cut(s)	131, 1249
BstC8I	GCNNGC	4 cut(s)	276, 960, 1011, 1169
BstDEI	CTNAG	8 cut(s)	9, 357, 655, 789, 852, 900, 1005, 1305
BstDSI	CCRYGG	1 cut(s)	136
BstF5I	GGATG	4 cut(s)	559, 571, 1140, 1157
BstMAI	GTCTC	3 cut(s)	270, 665, 727
BstMWI	GCNNNNNNNGC	3 cut(s)	70, 905, 914
BstNSI	RCATGY	2 cut(s)	278, 1178
BstSFI	CTRYAG	2 cut(s)	807, 1162
BstSNI	TACGTA	1 cut(s)	1249
BstV1I	GCAGC	5 cut(s)	51, 793, 883, 949, 1176
BstV2I	GAAGAC	1 cut(s)	714
BstX2I	RGATCY	3 cut(s)	140, 542, 1255
BstYI	RGATCY	3 cut(s)	140, 542, 1255
BsuRI	GGCC	3 cut(s)	600, 908, 1024
BtgI	CCRYGG	1 cut(s)	136
BtgZI	GCGATG	1 cut(s)	1079
BtsCI	GGATG	4 cut(s)	559, 571, 1140, 1157
BtsIMutI	CAGTG	2 cut(s)	1002, 1365
Cac8I	GCNNGC	4 cut(s)	276, 960, 1011, 1169
Cfr13I	GGNCC	2 cut(s)	416, 598
Csp6I	GTAC	3 cut(s)	128, 833, 1221
CviQI	GTAC	3 cut(s)	128, 833, 1221
DdeI	CTNAG	8 cut(s)	9, 357, 655, 789, 852, 900, 1005, 1305
DraIII	CACNNNGTG	1 cut(s)	1031
DrdI	GACNNNNNNGTC	1 cut(s)	10
DseDI	GACNNNNNNGTC	1 cut(s)	10
EaeI	YGGCCR	1 cut(s)	1022
Eam1104I	CTCTTC	3 cut(s)	164, 328, 343
EarI	CTCTTC	3 cut(s)	164, 328, 343
Ecl136II	GAGCTC	2 cut(s)	338, 821
Eco105I	TACGTA	1 cut(s)	1249
Eco130I	CCWWGG	2 cut(s)	136, 909
Eco147I	AGGCCT	1 cut(s)	908
Eco24I	GRGCYC	4 cut(s)	161, 340, 656, 823
Eco47I	GGWCC	1 cut(s)	416
Eco53kI	GAGCTC	2 cut(s)	338, 821
Eco57I	CTGAAG	1 cut(s)	696
EcoICRI	GAGCTC	2 cut(s)	338, 821
EcoT14I	CCWWGG	2 cut(s)	136, 909
EcoT38I	GRGCYC	4 cut(s)	161, 340, 656, 823
ErhI	CCWWGG	2 cut(s)	136, 909
FalI	AAGNNNNNCTT	2 cut(s)	145, 177
FaqI	GGGAC	2 cut(s)	199, 706
FblI	GTMKAC	1 cut(s)	746
Fnu4HI	GCNGC	6 cut(s)	65, 807, 897, 963, 1043, 1165
FokI	GGATG	4 cut(s)	546, 578, 1127, 1144
FriOI	GRGCYC	4 cut(s)	161, 340, 656, 823
Fsp4HI	GCNGC	6 cut(s)	65, 807, 897, 963, 1043, 1165
FspBI	CTAG	1 cut(s)	150
GluI	GCNGC	6 cut(s)	65, 807, 897, 963, 1043, 1165
GsuI	CTGGAG	1 cut(s)	108
HaeIII	GGCC	3 cut(s)	600, 908, 1024
HapII	CCGG	3 cut(s)	526, 563, 1192
HindIII	AAGCTT	2 cut(s)	956, 1068
HinfI	GANTC	5 cut(s)	172, 743, 839, 875, 978
HpaII	CCGG	3 cut(s)	526, 563, 1192
HphI	GGTGA	5 cut(s)	186, 543, 744, 1076, 1145
Hpy166II	GTNNAC	1 cut(s)	747
Hpy188I	TCNGA	2 cut(s)	517, 658
Hpy8I	GTNNAC	1 cut(s)	747
HpyAV	CCTTC	8 cut(s)	54, 147, 318, 456, 671, 945, 1010, 1122
HpyCH4III	ACNGT	1 cut(s)	707
HpyCH4IV	ACGT	3 cut(s)	42, 130, 1248
HpyCH4V	TGCA	6 cut(s)	67, 278, 640, 809, 1164, 1295
HpyF10VI	GCNNNNNNNGC	3 cut(s)	70, 905, 914
HpyF3I	CTNAG	8 cut(s)	9, 357, 655, 789, 852, 900, 1005, 1305
HpySE526I	ACGT	3 cut(s)	42, 130, 1248
Kpn2I	TCCGGA	1 cut(s)	562
KpnI	GGTACC	1 cut(s)	836
LguI	GCTCTTC	1 cut(s)	328
LmnI	GCTCC	2 cut(s)	156, 1207
Lsp1109I	GCAGC	5 cut(s)	51, 793, 883, 949, 1176
MaeI	CTAG	1 cut(s)	150
MaeII	ACGT	3 cut(s)	42, 130, 1248
MaeIII	GTNAC	3 cut(s)	131, 1106, 1363
MboII	GAAGA	8 cut(s)	181, 345, 360, 388, 477, 714, 784, 1099
MfeI	CAATTG	1 cut(s)	1296
MflI	RGATCY	3 cut(s)	140, 542, 1255
MhlI	GDGCHC	4 cut(s)	161, 340, 656, 823
MluCI	AATT	5 cut(s)	452, 591, 1187, 1296, 1343
MlyI	GAGTC	3 cut(s)	181, 752, 848
MroI	TCCGGA	1 cut(s)	562
MseI	TTAA	5 cut(s)	251, 329, 1056, 1074, 1341
MslI	CAYNNNNRTG	2 cut(s)	474, 564
MspI	CCGG	3 cut(s)	526, 563, 1192
MunI	CAATTG	1 cut(s)	1296
MwoI	GCNNNNNNNGC	3 cut(s)	70, 905, 914
NcoI	CCATGG	1 cut(s)	136
NlaIV	GGNNCC	3 cut(s)	158, 417, 834
NmuCI	GTSAC	2 cut(s)	131, 1363
NspI	RCATGY	2 cut(s)	278, 1178
PaeI	GCATGC	1 cut(s)	278
PceI	AGGCCT	1 cut(s)	908
PciSI	GCTCTTC	1 cut(s)	328
PcsI	WCGNNNNNNNCGW	1 cut(s)	1027
PfeI	GAWTC	2 cut(s)	875, 978
PflMI	CCANNNNNTGG	1 cut(s)	761
PkrI	GCNGC	6 cut(s)	66, 808, 898, 964, 1044, 1166
PleI	GAGTC	3 cut(s)	180, 751, 847
PpsI	GAGTC	3 cut(s)	180, 751, 847
Ppu21I	YACGTR	2 cut(s)	131, 1249
Psp124BI	GAGCTC	2 cut(s)	340, 823
PspN4I	GGNNCC	3 cut(s)	158, 417, 834
PspPI	GGNCC	2 cut(s)	416, 598
PstI	CTGCAG	2 cut(s)	811, 1166
PsuI	RGATCY	3 cut(s)	140, 542, 1255
RsaI	GTAC	3 cut(s)	129, 834, 1222
RsaNI	GTAC	3 cut(s)	128, 833, 1221
RseI	CAYNNNNRTG	2 cut(s)	474, 564
SacI	GAGCTC	2 cut(s)	340, 823
SapI	GCTCTTC	1 cut(s)	328
SaqAI	TTAA	5 cut(s)	251, 329, 1056, 1074, 1341
SatI	GCNGC	6 cut(s)	65, 807, 897, 963, 1043, 1165
Sau96I	GGNCC	2 cut(s)	416, 598
SchI	GAGTC	3 cut(s)	181, 752, 848
SduI	GDGCHC	4 cut(s)	161, 340, 656, 823
SfcI	CTRYAG	2 cut(s)	807, 1162
SinI	GGWCC	1 cut(s)	416
SmiMI	CAYNNNNRTG	2 cut(s)	474, 564
SmlI	CTYRAG	1 cut(s)	339
SmoI	CTYRAG	1 cut(s)	339
SnaBI	TACGTA	1 cut(s)	1249
SphI	GCATGC	1 cut(s)	278
Sse9I	AATT	5 cut(s)	452, 591, 1187, 1296, 1343
SseBI	AGGCCT	1 cut(s)	908
SsiI	CCGC	2 cut(s)	965, 1042
SspMI	CTAG	1 cut(s)	150
SstI	GAGCTC	2 cut(s)	340, 823
StuI	AGGCCT	1 cut(s)	908
StyI	CCWWGG	2 cut(s)	136, 909
TaaI	ACNGT	1 cut(s)	707
TaiI	ACGT	3 cut(s)	45, 133, 1251
TaqI	TCGA	3 cut(s)	181, 520, 731
TasI	AATT	5 cut(s)	452, 591, 1187, 1296, 1343
TauI	GCSGC	1 cut(s)	1045
TfiI	GAWTC	2 cut(s)	875, 978
Tru1I	TTAA	5 cut(s)	251, 329, 1056, 1074, 1341
Tru9I	TTAA	5 cut(s)	251, 329, 1056, 1074, 1341
TscAI	CASTG	2 cut(s)	1009, 1372
TseFI	GTSAC	2 cut(s)	131, 1363
TseI	GCWGC	5 cut(s)	64, 806, 896, 962, 1164
Tsp45I	GTSAC	2 cut(s)	131, 1363
TspDTI	ATGAA	7 cut(s)	384, 582, 618, 1092, 1100, 1302, 1332
TspGWI	ACGGA	1 cut(s)	1163
TspRI	CASTG	2 cut(s)	1009, 1372
Van91I	CCANNNNNTGG	1 cut(s)	761
VpaK11BI	GGWCC	1 cut(s)	416
XapI	RAATTY	1 cut(s)	1343
XceI	RCATGY	2 cut(s)	278, 1178
XmiI	GTMKAC	1 cut(s)	746
XspI	CTAG	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.