Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002746

Physical Location & Seq

Genomic Coordinates Forward (+)

25115169 .. 25123347

Gene Structure 8179 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37655

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGGGGCGTAATCTAAAAAATCATTCCAAATCTCCAGTACGTGACCATGGATCTCCTCCTAGAAGGAGCCCTTATAGGAAGAGTCAATCTCGAACAGAAAGATCACCTAATCAACATAGAAAGTCCCAGAGAGGCAGTTCTCCCGTTGCAGTGAAGCATTCAAGTCGCCCCAAGTCTCCCAAGCATGCAAGGTCGCCCACTCCTCCTCCTCGCTCTCCTTCTCCTTGCACCAAATGGTTAAGAAGAGCTCAAGCTGGAAGAGTGCCTGAGAGAGAAGATGAAAGGAAGAATGGTAGGGGGATCGGTAGGGATTTACAGGAGGGGGGTCCAGAGAGAGAAGTTGGGAGTGATAGAAATGAGAAATTGTCGGGAAGGGATCATACCAATGGTAAATCTTCAAGATCAAGGCATGATACCTCTCCATCAGATCGACACCGGAGGAGTAGGCATAGATCTCCCTCACCTCAACATCCGGATGAAACAAAATATGGAGATAAAGTAATTGAGGGCCATGAAAGAAATCATCACAGAGGGAGTGACAGAAGTATGCAAAGGGAAAATGGCTCAGATAGGGAAAATGAGACTGAAGGAATGGAGAGAGGGACAGAAAAAGACAGTTCTGGTCATAGGTCTTCAAGATCGAGACATGGGGAGTCTACTTCACCATTGAATGGACACCAGAAGAAAAAACACAAAACTCAGTCGCCTCGACAAGCTGCAGATACCAGAGCTCACTATGAGGTACCAGAGTCAAGGGAAGCTGAGCATGGGATTGATGAGAATGATTCAGTAGCAATGATGAGAGCTGCTGAGGAGGCCTTGGAAGCACAGAAAAAGCAAAAACCTTCGTTTGAGCTATCTGGAAAGCTTGCTGCGGAAACCAATAGATTCAGGGGTATAACACTATTATACACTGAGCCAGCAGAAGGACGGCCACCTTGTGTAAAATGGCGGCTTTATGTTTTCAAGGGTGGTGAAGCTTTTAATGAACCCATTAAGATACATCGCCAAAGCTGTTACCTTTTCGGGAGGGAAAGAAGGGTGGCAGACATCCCTACGGATCACCCGTCCTGCAGCAAGCAACATGCTGTTCTACAATTCCGGCAAGTAGAAAAGGAGCAACCAGATGGTACATTGTCAAAGGAAGTCAAGCCTTACGTAATGGATCTTGGAAGCACAAATAAAACTTTTGTCAATGAAACTGCAATTGAACCTCAGCGATATTATGAACTTATGGAAAAAGACACGATTAAATTTGGTAATAGTAGCCGAGAGTATGTTCTACTGCACGAGAATTCTATGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008283 GO:0009507 GO:0009536 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0019222 GO:0031047 GO:0031050 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0040008 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048519 GO:0048638 GO:0050789 GO:0050793 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

435

Amino Acids

49.71

Weight (kDa)

9.84

Isoelectric Point (pI)

66.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FHA	PF00498	340 - 420	1.1e-15	FHA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24410 AT3G20550
fragaria_vesca	FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_6g43590
malus_domestica	MD03G1208700.v1.1 MD06G1125500.v1.1 MD11G1223400.v1.1
prunus_persica	Prupe.4G208000_v2.0.a1
pyrus_communis	pycom06g11580 pycom11g19700
rosa_chinensis	RchiOBHm_Chr2g0160171 RchiOBHm_Chr4g0405041 RchiOBHm_Chr5g0037921
rosa_laevigata	RLG00000008882 RLG00000021201 RLG00000033823
rosa_multiflora	Rmu_sc0001744.1_g000004 Rmu_ssc0000241.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042940 Rroxscaffold_5G00349230
rosa_rugosa	Rorug04G0052500 Rorug05G0169400 Rorug05G0169500 Rorug05G0169600
rosa_samantha	Rh2BG560700 Rh4AG127600 Rh4BG121300 Rh4CG135400 Rh4DG121700 Rh5AG257700 Rh5BG260500 Rh5CG293100
rosa_wichuraiana	Rw2G045270 Rw4G010330 Rw5G023890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	742
AccB1I	GGYRCC	1 cut(s)	742
AccB7I	CCANNNNNTGG	1 cut(s)	671
AccI	GTMKAC	1 cut(s)	656
AccIII	TCCGGA	1 cut(s)	472
AciI	CCGC	2 cut(s)	875, 952
AclWI	GGATC	5 cut(s)	58, 308, 384, 1068, 1173
AcoI	YGGCCR	1 cut(s)	932
AcsI	RAATTY	2 cut(s)	1253, 1294
AcuI	CTGAAG	1 cut(s)	606
AdeI	CACNNNGTG	1 cut(s)	941
AfaI	GTAC	3 cut(s)	39, 744, 1132
AfiI	CCNNNNNNNGG	2 cut(s)	671, 926
AgsI	TTSAA	6 cut(s)	162, 399, 636, 670, 967, 1211
Alw21I	GWGCWC	2 cut(s)	250, 733
Alw26I	GTCTC	3 cut(s)	180, 575, 637
AlwI	GGATC	5 cut(s)	58, 308, 384, 1068, 1173
Aor13HI	TCCGGA	1 cut(s)	472
AoxI	GGCC	3 cut(s)	508, 816, 932
ApeKI	GCWGC	4 cut(s)	716, 806, 872, 1074
ApoI	RAATTY	2 cut(s)	1253, 1294
Asp718I	GGTACC	1 cut(s)	742
AspS9I	GGNCC	2 cut(s)	326, 508
AsuHPI	GGTGA	5 cut(s)	96, 453, 654, 986, 1055
AvaII	GGWCC	1 cut(s)	326
BaeI	ACNNNNGTAYC	2 cut(s)	734, 767
BanI	GGYRCC	1 cut(s)	742
BanII	GRGCYC	3 cut(s)	71, 250, 733
BarI	GAAGNNNNNNTAC	2 cut(s)	364, 396
BauI	CACGAG	1 cut(s)	1289
BbsI	GAAGAC	1 cut(s)	624
Bbv12I	GWGCWC	2 cut(s)	250, 733
BbvCI	CCTCAGC	2 cut(s)	810, 1215
BbvI	GCAGC	4 cut(s)	703, 793, 859, 1086
BccI	CCATC	2 cut(s)	430, 1121
BceAI	ACGGC	1 cut(s)	947
BcgI	CGANNNNNNTGC	2 cut(s)	146, 180
BcoDI	GTCTC	3 cut(s)	180, 575, 637
BfaI	CTAG	1 cut(s)	60
BfmI	CTRYAG	2 cut(s)	717, 1072
BglII	AGATCT	1 cut(s)	452
BisI	GCNGC	5 cut(s)	717, 807, 873, 953, 1075
BlpI	GCTNAGC	1 cut(s)	762
BlsI	GCNGC	5 cut(s)	718, 808, 874, 954, 1076
Bme18I	GGWCC	1 cut(s)	326
BmgT120I	GGNCC	2 cut(s)	326, 508
BmiI	GGNNCC	3 cut(s)	68, 327, 744
BpiI	GAAGAC	1 cut(s)	624
BplI	GAGNNNNNCTC	2 cut(s)	73, 105
BpmI	CTGGAG	1 cut(s)	18
Bpu10I	CCTNAGC	2 cut(s)	810, 1215
Bpu1102I	GCTNAGC	1 cut(s)	762
BpuEI	CTTGAG	1 cut(s)	234
BsaAI	YACGTR	2 cut(s)	41, 1159
BsaJI	CCNNGG	2 cut(s)	46, 819
BsaWI	WCCGGW	2 cut(s)	435, 472
BsaXI	ACNNNNNCTCC	4 cut(s)	190, 220, 483, 513
Bsc4I	CCNNNNNNNGG	2 cut(s)	671, 926
Bse1I	ACTGG	1 cut(s)	35
Bse3DI	GCAATG	1 cut(s)	801
BseAI	TCCGGA	1 cut(s)	472
BseDI	CCNNGG	2 cut(s)	46, 819
BseGI	GGATG	3 cut(s)	469, 481, 1050
BseLI	CCNNNNNNNGG	2 cut(s)	671, 926
BseMI	GCAATG	1 cut(s)	801
BseMII	CTCAG	7 cut(s)	258, 579, 713, 753, 801, 906, 1229
BseNI	ACTGG	1 cut(s)	35
BseRI	GAGGAG	6 cut(s)	45, 192, 195, 198, 454, 827
BseXI	GCAGC	4 cut(s)	703, 793, 859, 1086
BsgI	GTGCAG	1 cut(s)	1271
BshFI	GGCC	3 cut(s)	510, 818, 934
BshNI	GGYRCC	1 cut(s)	742
BsiHKAI	GWGCWC	2 cut(s)	250, 733
BsiSI	CCGG	3 cut(s)	436, 473, 1102
BslFI	GGGAC	2 cut(s)	109, 616
BslI	CCNNNNNNNGG	2 cut(s)	671, 926
BsmAI	GTCTC	3 cut(s)	180, 575, 637
BsmFI	GGGAC	2 cut(s)	109, 616
BsmI	GAATGC	1 cut(s)	157
BsnI	GGCC	3 cut(s)	510, 818, 934
Bsp1286I	GDGCHC	3 cut(s)	71, 250, 733
Bsp13I	TCCGGA	1 cut(s)	472
Bsp1720I	GCTNAGC	1 cut(s)	762
Bsp19I	CCATGG	1 cut(s)	46
BspACI	CCGC	2 cut(s)	875, 952
BspANI	GGCC	3 cut(s)	510, 818, 934
BspCNI	CTCAG	7 cut(s)	259, 578, 712, 754, 802, 907, 1228
BspEI	TCCGGA	1 cut(s)	472
BspLI	GGNNCC	3 cut(s)	68, 327, 744
BspMAI	CTGCAG	2 cut(s)	721, 1076
BspPI	GGATC	5 cut(s)	58, 308, 384, 1068, 1173
BspQI	GCTCTTC	1 cut(s)	238
BspT107I	GGYRCC	1 cut(s)	742
BsrDI	GCAATG	1 cut(s)	801
BsrI	ACTGG	1 cut(s)	35
BssECI	CCNNGG	2 cut(s)	46, 819
BssSI	CACGAG	1 cut(s)	1289
BssT1I	CCWWGG	2 cut(s)	46, 819
Bst2BI	CACGAG	1 cut(s)	1289
Bst4CI	ACNGT	1 cut(s)	617
Bst6I	CTCTTC	3 cut(s)	74, 238, 253
BstBAI	YACGTR	2 cut(s)	41, 1159
BstC8I	GCNNGC	4 cut(s)	186, 870, 921, 1079
BstDEI	CTNAG	7 cut(s)	267, 565, 699, 762, 810, 915, 1215
BstDSI	CCRYGG	1 cut(s)	46
BstF5I	GGATG	3 cut(s)	469, 481, 1050
BstMAI	GTCTC	3 cut(s)	180, 575, 637
BstMWI	GCNNNNNNNGC	2 cut(s)	815, 824
BstNSI	RCATGY	2 cut(s)	188, 1088
BstSFI	CTRYAG	2 cut(s)	717, 1072
BstSNI	TACGTA	1 cut(s)	1159
BstV1I	GCAGC	4 cut(s)	703, 793, 859, 1086
BstV2I	GAAGAC	1 cut(s)	624
BstX2I	RGATCY	3 cut(s)	50, 452, 1165
BstYI	RGATCY	3 cut(s)	50, 452, 1165
BsuRI	GGCC	3 cut(s)	510, 818, 934
BtgI	CCRYGG	1 cut(s)	46
BtgZI	GCGATG	1 cut(s)	989
BtsCI	GGATG	3 cut(s)	469, 481, 1050
BtsI	GCAGTG	1 cut(s)	156
BtsIMutI	CAGTG	2 cut(s)	156, 912
Cac8I	GCNNGC	4 cut(s)	186, 870, 921, 1079
Cfr13I	GGNCC	2 cut(s)	326, 508
Csp6I	GTAC	3 cut(s)	38, 743, 1131
CviAII	CATG	7 cut(s)	47, 185, 410, 512, 647, 767, 1085
CviQI	GTAC	3 cut(s)	38, 743, 1131
DdeI	CTNAG	7 cut(s)	267, 565, 699, 762, 810, 915, 1215
DraIII	CACNNNGTG	1 cut(s)	941
EaeI	YGGCCR	1 cut(s)	932
Eam1104I	CTCTTC	3 cut(s)	74, 238, 253
EarI	CTCTTC	3 cut(s)	74, 238, 253
Ecl136II	GAGCTC	2 cut(s)	248, 731
Eco105I	TACGTA	1 cut(s)	1159
Eco130I	CCWWGG	2 cut(s)	46, 819
Eco147I	AGGCCT	1 cut(s)	818
Eco24I	GRGCYC	3 cut(s)	71, 250, 733
Eco47I	GGWCC	1 cut(s)	326
Eco53kI	GAGCTC	2 cut(s)	248, 731
Eco57I	CTGAAG	1 cut(s)	606
EcoICRI	GAGCTC	2 cut(s)	248, 731
EcoRI	GAATTC	1 cut(s)	1294
EcoT14I	CCWWGG	2 cut(s)	46, 819
EcoT38I	GRGCYC	3 cut(s)	71, 250, 733
ErhI	CCWWGG	2 cut(s)	46, 819
FaeI	CATG	7 cut(s)	50, 188, 413, 515, 650, 770, 1088
FalI	AAGNNNNNCTT	2 cut(s)	55, 87
FaqI	GGGAC	2 cut(s)	109, 616
FatI	CATG	7 cut(s)	46, 184, 409, 511, 646, 766, 1084
FblI	GTMKAC	1 cut(s)	656
Fnu4HI	GCNGC	5 cut(s)	717, 807, 873, 953, 1075
FokI	GGATG	3 cut(s)	456, 488, 1037
FriOI	GRGCYC	3 cut(s)	71, 250, 733
Fsp4HI	GCNGC	5 cut(s)	717, 807, 873, 953, 1075
FspBI	CTAG	1 cut(s)	60
GluI	GCNGC	5 cut(s)	717, 807, 873, 953, 1075
GsuI	CTGGAG	1 cut(s)	18
HaeIII	GGCC	3 cut(s)	510, 818, 934
HapII	CCGG	3 cut(s)	436, 473, 1102
Hin1II	CATG	7 cut(s)	50, 188, 413, 515, 650, 770, 1088
HindIII	AAGCTT	2 cut(s)	866, 978
HinfI	GANTC	5 cut(s)	82, 653, 749, 785, 888
HpaII	CCGG	3 cut(s)	436, 473, 1102
HphI	GGTGA	5 cut(s)	96, 453, 654, 986, 1055
Hpy166II	GTNNAC	1 cut(s)	657
Hpy188I	TCNGA	2 cut(s)	427, 568
Hpy188III	TCNNGA	9 cut(s)	90, 329, 369, 399, 473, 636, 642, 861, 1027
Hpy8I	GTNNAC	1 cut(s)	657
HpyAV	CCTTC	7 cut(s)	57, 228, 366, 581, 855, 920, 1032
HpyCH4III	ACNGT	1 cut(s)	617
HpyCH4IV	ACGT	2 cut(s)	40, 1158
HpyCH4V	TGCA	8 cut(s)	149, 188, 228, 550, 719, 1074, 1205, 1288
HpyF10VI	GCNNNNNNNGC	2 cut(s)	815, 824
HpyF3I	CTNAG	7 cut(s)	267, 565, 699, 762, 810, 915, 1215
HpySE526I	ACGT	2 cut(s)	40, 1158
Hsp92II	CATG	7 cut(s)	50, 188, 413, 515, 650, 770, 1088
Kpn2I	TCCGGA	1 cut(s)	472
KpnI	GGTACC	1 cut(s)	746
LguI	GCTCTTC	1 cut(s)	238
LmnI	GCTCC	2 cut(s)	66, 1117
Lsp1109I	GCAGC	4 cut(s)	703, 793, 859, 1086
MaeI	CTAG	1 cut(s)	60
MaeII	ACGT	2 cut(s)	40, 1158
MaeIII	GTNAC	3 cut(s)	41, 536, 1016
MboII	GAAGA	8 cut(s)	91, 255, 270, 287, 298, 387, 624, 694
MfeI	CAATTG	1 cut(s)	1206
MflI	RGATCY	3 cut(s)	50, 452, 1165
MhlI	GDGCHC	3 cut(s)	71, 250, 733
MluCI	AATT	6 cut(s)	362, 501, 1097, 1206, 1253, 1294
MlyI	GAGTC	3 cut(s)	91, 662, 758
MroI	TCCGGA	1 cut(s)	472
MseI	TTAA	4 cut(s)	239, 984, 996, 1251
MslI	CAYNNNNRTG	2 cut(s)	384, 474
MspI	CCGG	3 cut(s)	436, 473, 1102
MunI	CAATTG	1 cut(s)	1206
Mva1269I	GAATGC	1 cut(s)	157
MwoI	GCNNNNNNNGC	2 cut(s)	815, 824
NcoI	CCATGG	1 cut(s)	46
NlaIII	CATG	7 cut(s)	50, 188, 413, 515, 650, 770, 1088
NlaIV	GGNNCC	3 cut(s)	68, 327, 744
NmeAIII	GCCGAG	1 cut(s)	1295
NmuCI	GTSAC	2 cut(s)	41, 536
NspI	RCATGY	2 cut(s)	188, 1088
PaeI	GCATGC	1 cut(s)	188
PceI	AGGCCT	1 cut(s)	818
PciSI	GCTCTTC	1 cut(s)	238
PcsI	WCGNNNNNNNCGW	1 cut(s)	1064
PctI	GAATGC	1 cut(s)	157
PfeI	GAWTC	2 cut(s)	785, 888
PflMI	CCANNNNNTGG	1 cut(s)	671
PkrI	GCNGC	5 cut(s)	718, 808, 874, 954, 1076
PleI	GAGTC	3 cut(s)	90, 661, 757
PpsI	GAGTC	3 cut(s)	90, 661, 757
Ppu21I	YACGTR	2 cut(s)	41, 1159
Psp124BI	GAGCTC	2 cut(s)	250, 733
PspN4I	GGNNCC	3 cut(s)	68, 327, 744
PspPI	GGNCC	2 cut(s)	326, 508
PstI	CTGCAG	2 cut(s)	721, 1076
PsuI	RGATCY	3 cut(s)	50, 452, 1165
RsaI	GTAC	3 cut(s)	39, 744, 1132
RsaNI	GTAC	3 cut(s)	38, 743, 1131
RseI	CAYNNNNRTG	2 cut(s)	384, 474
SacI	GAGCTC	2 cut(s)	250, 733
SapI	GCTCTTC	1 cut(s)	238
SaqAI	TTAA	4 cut(s)	239, 984, 996, 1251
SatI	GCNGC	5 cut(s)	717, 807, 873, 953, 1075
Sau96I	GGNCC	2 cut(s)	326, 508
SchI	GAGTC	3 cut(s)	91, 662, 758
SduI	GDGCHC	3 cut(s)	71, 250, 733
SfcI	CTRYAG	2 cut(s)	717, 1072
SinI	GGWCC	1 cut(s)	326
SmiMI	CAYNNNNRTG	2 cut(s)	384, 474
SmlI	CTYRAG	1 cut(s)	249
SmoI	CTYRAG	1 cut(s)	249
SnaBI	TACGTA	1 cut(s)	1159
SphI	GCATGC	1 cut(s)	188
Sse9I	AATT	6 cut(s)	362, 501, 1097, 1206, 1253, 1294
SseBI	AGGCCT	1 cut(s)	818
SsiI	CCGC	2 cut(s)	875, 952
SspMI	CTAG	1 cut(s)	60
SstI	GAGCTC	2 cut(s)	250, 733
StuI	AGGCCT	1 cut(s)	818
StyI	CCWWGG	2 cut(s)	46, 819
TaaI	ACNGT	1 cut(s)	617
TaiI	ACGT	2 cut(s)	43, 1161
TaqI	TCGA	4 cut(s)	91, 430, 641, 709
TasI	AATT	6 cut(s)	362, 501, 1097, 1206, 1253, 1294
TauI	GCSGC	1 cut(s)	955
TfiI	GAWTC	2 cut(s)	785, 888
Tru1I	TTAA	4 cut(s)	239, 984, 996, 1251
Tru9I	TTAA	4 cut(s)	239, 984, 996, 1251
TscAI	CASTG	2 cut(s)	156, 919
TseFI	GTSAC	2 cut(s)	41, 536
TseI	GCWGC	4 cut(s)	716, 806, 872, 1074
Tsp45I	GTSAC	2 cut(s)	41, 536
TspDTI	ATGAA	6 cut(s)	294, 492, 528, 1002, 1212, 1242
TspGWI	ACGGA	1 cut(s)	1073
TspRI	CASTG	2 cut(s)	156, 919
Van91I	CCANNNNNTGG	1 cut(s)	671
VpaK11BI	GGWCC	1 cut(s)	326
XapI	RAATTY	2 cut(s)	1253, 1294
XceI	RCATGY	2 cut(s)	188, 1088
XmiI	GTMKAC	1 cut(s)	656
XspI	CTAG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.