Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0002746

Physical Location & Seq

Genomic Coordinates Forward (+)

32729836 .. 32736189

Gene Structure 6354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1223400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGGGGCGTAGCGTTTCAAATCATTCCGAAGAATCTCTGGTTGGGGAGCATGGGTCTCCTCATCGTAGGAGGAGCCCATCTAGAAAGATTCCATCTCGAATAGAAAGATCACCTACTCGACATAGGAGGTCCAACAGGGGTAGTGCTCCAGTAAGAGAGAAACATTCCAGTCACCCTAAGTCTCCGAAGCATGCAAGGTCCCCGTCTCATCCTGATCGCTCTCCTTCTCCCCGAACAAAACGGTTAAGAAGAGCTCAAGCTGAAAGAGAGGCTGAGAGAGAACCTGAAAAGAACAATGGGAGGGGAGCTGATAGGGATTTACAGAAGGAAGGGGGTTCAGTGAGAGATGTTGGGAGCAATAGAAAGGAGAGTCGGTCAGGAAGAGATGATACTTCACCGTCAGATCAACAGCGCAGGAGTAGGCATCGATCTTCCTCACCTCAACCTGCTGGTGATACTAGAGGTGAGGAGAAAGTAATTGAGAAAGAACGTGAAAGGAATCATGGCAGAGGAAGTGTTAGAAGTATGCAAAGGGAAAAGGGTTCAGATAGGGAAACTGAGAGTGACAGAGTGGAGAGAAAGTCAGGAAAAGACAGTGCTGAGCACAGGTCTTCAAGATCAAGACATGGGCGGTCTACATCTCCATTAGATCGGCACCACAAGAACAGACATAGATCTCATTCACCTCAACAAGCTGCCAATATCAGAATCCGTGATGAGGAGCCAAATTCAAGAGGAGCTGAGCAAGGGGATGCTGAGAATGATGCAGTAGCAATGATGAAGGCTGCAGAGGAAGCCTTGGAAGCAAAGCAAAAGCAAAAACCTTCATTTGAGCTATCTGGGAAGCTTGCTGCGGAAACCAATAGAGTCAATGGTGTAACGCTATTATTCACCGAGCCACCAGAAGGACGAAAACCTACTGTGAGATGGCGGCTTTATGTTTTCAAGGGTGGTGAAGTTTTGAAAGACCCCCTTTACATACATCGTCAAAGCTGTTACCTTTTTGGGAGGGAAAGAAGGGTGGCAGACATTCCTACAGATCACCCATCCTGCAGCAAGCAACATGCTGTTATACAATACCGCCAAGTTGAAAAGGAGCAACCGGATGGTATGTTAACAAAGGAAGTAAGGCCTTACTTGATGGATCTTGGAAGCACAAATAAAACTTTTCTCAATGAAAATGCAATCGAACCTCAACGATATTATGAACTCATGGAAAAGGATACAATCAAATTTGGTAATAGTAGCCGAGAGTATGTGCTGCTGCACGAAAACTCAATGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008283 GO:0009507 GO:0009536 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0019222 GO:0031047 GO:0031050 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0040008 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048519 GO:0048638 GO:0050789 GO:0050793 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

429

Amino Acids

49.03

Weight (kDa)

10.07

Isoelectric Point (pI)

73.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FHA	PF00498	333 - 413	5.3e-16	FHA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24410 AT3G20550
fragaria_vesca	FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_6g43590
malus_domestica	MD03G1208700.v1.1 MD06G1125500.v1.1 MD11G1223400.v1.1
prunus_persica	Prupe.4G208000_v2.0.a1
pyrus_communis	pycom06g11580 pycom11g19700
rosa_chinensis	RchiOBHm_Chr2g0160171 RchiOBHm_Chr4g0405041 RchiOBHm_Chr5g0037921
rosa_laevigata	RLG00000008882 RLG00000021201 RLG00000033823
rosa_multiflora	Rmu_sc0001744.1_g000004 Rmu_ssc0000241.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042940 Rroxscaffold_5G00349230
rosa_rugosa	Rorug04G0052500 Rorug05G0169400 Rorug05G0169500 Rorug05G0169600
rosa_samantha	Rh2BG560700 Rh4AG127600 Rh4BG121300 Rh4CG135400 Rh4DG121700 Rh5AG257700 Rh5BG260500 Rh5CG293100
rosa_wichuraiana	Rw2G045270 Rw4G010330 Rw5G023890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	454
AccB1I	GGYRCC	1 cut(s)	654
AccI	GTMKAC	1 cut(s)	635
AciI	CCGC	4 cut(s)	631, 854, 931, 1081
AclWI	GGATC	1 cut(s)	1152
AcsI	RAATTY	2 cut(s)	727, 1232
AfiI	CCNNNNNNNGG	2 cut(s)	718, 905
AgsI	TTSAA	6 cut(s)	18, 615, 732, 946, 964, 1091
AjuI	GAANNNNNNNTTGG	2 cut(s)	24, 56
AluBI	AGCT	8 cut(s)	254, 260, 308, 695, 740, 835, 847, 993
AluI	AGCT	8 cut(s)	254, 260, 308, 695, 740, 835, 847, 993
Alw21I	GWGCWC	3 cut(s)	148, 256, 606
Alw26I	GTCTC	3 cut(s)	60, 186, 210
AlwI	GGATC	1 cut(s)	1152
AoxI	GGCC	1 cut(s)	1130
ApeKI	GCWGC	6 cut(s)	695, 785, 851, 1053, 1261, 1264
ApoI	RAATTY	2 cut(s)	727, 1232
AspLEI	GCGC	1 cut(s)	414
AspS9I	GGNCC	2 cut(s)	129, 198
AvaII	GGWCC	2 cut(s)	129, 198
BanI	GGYRCC	1 cut(s)	654
BanII	GRGCYC	2 cut(s)	77, 256
BarI	GAAGNNNNNNTAC	2 cut(s)	373, 405
BbsI	GAAGAC	1 cut(s)	603
Bbv12I	GWGCWC	3 cut(s)	148, 256, 606
BbvI	GCAGC	6 cut(s)	682, 772, 838, 1065, 1248, 1251
BccI	CCATC	6 cut(s)	85, 100, 921, 1054, 1100, 1135
BciVI	GTATCC	1 cut(s)	1216
BcoDI	GTCTC	3 cut(s)	60, 186, 210
BfaI	CTAG	2 cut(s)	81, 459
BfmI	CTRYAG	3 cut(s)	786, 1035, 1051
BfuAI	ACCTGC	1 cut(s)	454
BfuI	GTATCC	1 cut(s)	1216
BglII	AGATCT	1 cut(s)	674
BisI	GCNGC	7 cut(s)	696, 786, 852, 932, 1054, 1262, 1265
BlpI	GCTNAGC	2 cut(s)	600, 741
BlsI	GCNGC	7 cut(s)	697, 787, 853, 933, 1055, 1263, 1266
Bme18I	GGWCC	2 cut(s)	129, 198
BmgT120I	GGNCC	2 cut(s)	129, 198
BmiI	GGNNCC	4 cut(s)	74, 200, 656, 723
BmsI	GCATC	3 cut(s)	433, 742, 754
BpiI	GAAGAC	1 cut(s)	603
BpmI	CTGGAG	1 cut(s)	132
Bpu1102I	GCTNAGC	2 cut(s)	600, 741
BpuEI	CTTGAG	1 cut(s)	240
Bsa29I	ATCGAT	1 cut(s)	427
BsaI	GGTCTC	1 cut(s)	60
BsaJI	CCNNGG	1 cut(s)	798
BsaWI	WCCGGW	1 cut(s)	1102
BsaXI	ACNNNNNCTCC	6 cut(s)	38, 68, 359, 389, 566, 596
Bsc4I	CCNNNNNNNGG	2 cut(s)	718, 905
Bse1I	ACTGG	2 cut(s)	149, 168
Bse3DI	GCAATG	1 cut(s)	780
BseCI	ATCGAT	1 cut(s)	427
BseDI	CCNNGG	1 cut(s)	798
BseGI	GGATG	4 cut(s)	208, 757, 1046, 1111
BseLI	CCNNNNNNNGG	2 cut(s)	718, 905
BseMI	GCAATG	1 cut(s)	780
BseMII	CTCAG	5 cut(s)	264, 549, 591, 732, 747
BseNI	ACTGG	2 cut(s)	149, 168
BseRI	GAGGAG	5 cut(s)	48, 85, 482, 734, 750
BseXI	GCAGC	6 cut(s)	682, 772, 838, 1065, 1248, 1251
BsgI	GTGCAG	1 cut(s)	1250
BshFI	GGCC	1 cut(s)	1132
BshNI	GGYRCC	1 cut(s)	654
BshVI	ATCGAT	1 cut(s)	427
BsiHKAI	GWGCWC	3 cut(s)	148, 256, 606
BsiSI	CCGG	1 cut(s)	1103
BslFI	GGGAC	1 cut(s)	184
BslI	CCNNNNNNNGG	2 cut(s)	718, 905
BsmAI	GTCTC	3 cut(s)	60, 186, 210
BsmBI	CGTCTC	1 cut(s)	210
BsmFI	GGGAC	1 cut(s)	184
BsnI	GGCC	1 cut(s)	1132
Bso31I	GGTCTC	1 cut(s)	60
Bsp1286I	GDGCHC	4 cut(s)	77, 148, 256, 606
Bsp143I	GATC	9 cut(s)	107, 214, 403, 428, 617, 649, 674, 1039, 1144
Bsp1720I	GCTNAGC	2 cut(s)	600, 741
BspACI	CCGC	4 cut(s)	631, 854, 931, 1081
BspANI	GGCC	1 cut(s)	1132
BspCNI	CTCAG	5 cut(s)	265, 550, 592, 733, 748
BspDI	ATCGAT	1 cut(s)	427
BspLI	GGNNCC	4 cut(s)	74, 200, 656, 723
BspMAI	CTGCAG	2 cut(s)	790, 1055
BspMI	ACCTGC	1 cut(s)	454
BspPI	GGATC	1 cut(s)	1152
BspQI	GCTCTTC	1 cut(s)	244
BspT107I	GGYRCC	1 cut(s)	654
BspTNI	GGTCTC	1 cut(s)	60
BsrDI	GCAATG	1 cut(s)	780
BsrI	ACTGG	2 cut(s)	149, 168
BssECI	CCNNGG	1 cut(s)	798
BssMI	GATC	9 cut(s)	107, 214, 403, 428, 617, 649, 674, 1039, 1144
BssT1I	CCWWGG	1 cut(s)	798
Bst4CI	ACNGT	4 cut(s)	243, 399, 596, 922
Bst6I	CTCTTC	2 cut(s)	244, 376
BstC8I	GCNNGC	3 cut(s)	192, 849, 1058
BstDEI	CTNAG	6 cut(s)	177, 273, 558, 600, 741, 756
BstF5I	GGATG	4 cut(s)	208, 757, 1046, 1111
BstHHI	GCGC	1 cut(s)	414
BstKTI	GATC	9 cut(s)	110, 217, 406, 431, 620, 652, 677, 1042, 1147
BstMAI	GTCTC	3 cut(s)	60, 186, 210
BstMBI	GATC	9 cut(s)	107, 214, 403, 428, 617, 649, 674, 1039, 1144
BstMWI	GCNNNNNNNGC	2 cut(s)	794, 803
BstNSI	RCATGY	2 cut(s)	194, 1067
BstSFI	CTRYAG	3 cut(s)	786, 1035, 1051
BstV1I	GCAGC	6 cut(s)	682, 772, 838, 1065, 1248, 1251
BstV2I	GAAGAC	1 cut(s)	603
BstX2I	RGATCY	2 cut(s)	674, 1144
BstYI	RGATCY	2 cut(s)	674, 1144
Bsu15I	ATCGAT	1 cut(s)	427
BsuI	GTATCC	1 cut(s)	1216
BsuRI	GGCC	1 cut(s)	1132
BsuTUI	ATCGAT	1 cut(s)	427
BtsCI	GGATG	4 cut(s)	208, 757, 1046, 1111
BtsIMutI	CAGTG	2 cut(s)	345, 601
BveI	ACCTGC	1 cut(s)	454
Cac8I	GCNNGC	3 cut(s)	192, 849, 1058
CfoI	GCGC	1 cut(s)	414
Cfr13I	GGNCC	2 cut(s)	129, 198
ClaI	ATCGAT	1 cut(s)	427
CviAII	CATG	6 cut(s)	50, 191, 503, 626, 1064, 1213
DdeI	CTNAG	6 cut(s)	177, 273, 558, 600, 741, 756
DpnI	GATC	9 cut(s)	109, 216, 405, 430, 619, 651, 676, 1041, 1146
DpnII	GATC	9 cut(s)	107, 214, 403, 428, 617, 649, 674, 1039, 1144
Eam1104I	CTCTTC	2 cut(s)	244, 376
EarI	CTCTTC	2 cut(s)	244, 376
Ecl136II	GAGCTC	1 cut(s)	254
Eco130I	CCWWGG	1 cut(s)	798
Eco147I	AGGCCT	1 cut(s)	1132
Eco24I	GRGCYC	2 cut(s)	77, 256
Eco31I	GGTCTC	1 cut(s)	60
Eco47I	GGWCC	2 cut(s)	129, 198
Eco53kI	GAGCTC	1 cut(s)	254
EcoICRI	GAGCTC	1 cut(s)	254
EcoO109I	RGGNCCY	1 cut(s)	198
EcoT14I	CCWWGG	1 cut(s)	798
EcoT38I	GRGCYC	2 cut(s)	77, 256
ErhI	CCWWGG	1 cut(s)	798
Esp3I	CGTCTC	1 cut(s)	210
FaeI	CATG	6 cut(s)	53, 194, 506, 629, 1067, 1216
FalI	AAGNNNNNCTT	2 cut(s)	957, 989
FaqI	GGGAC	1 cut(s)	184
FatI	CATG	6 cut(s)	49, 190, 502, 625, 1063, 1212
FblI	GTMKAC	1 cut(s)	635
Fnu4HI	GCNGC	7 cut(s)	696, 786, 852, 932, 1054, 1262, 1265
FokI	GGATG	4 cut(s)	195, 764, 1033, 1118
FriOI	GRGCYC	2 cut(s)	77, 256
Fsp4HI	GCNGC	7 cut(s)	696, 786, 852, 932, 1054, 1262, 1265
FspBI	CTAG	2 cut(s)	81, 459
GlaI	GCGC	1 cut(s)	413
GluI	GCNGC	7 cut(s)	696, 786, 852, 932, 1054, 1262, 1265
GsuI	CTGGAG	1 cut(s)	132
HaeIII	GGCC	1 cut(s)	1132
HapII	CCGG	1 cut(s)	1103
HhaI	GCGC	1 cut(s)	414
Hin1II	CATG	6 cut(s)	53, 194, 506, 629, 1067, 1216
Hin6I	GCGC	1 cut(s)	412
HinP1I	GCGC	1 cut(s)	412
HincII	GTYRAC	1 cut(s)	1116
HindII	GTYRAC	1 cut(s)	1116
HindIII	AAGCTT	1 cut(s)	845
HinfI	GANTC	6 cut(s)	32, 88, 370, 499, 708, 867
HpaI	GTTAAC	1 cut(s)	1116
HpaII	CCGG	1 cut(s)	1103
Hpy166II	GTNNAC	2 cut(s)	636, 1116
Hpy188I	TCNGA	5 cut(s)	28, 186, 403, 547, 707
Hpy188III	TCNNGA	8 cut(s)	81, 96, 212, 378, 585, 615, 621, 732
Hpy8I	GTNNAC	2 cut(s)	636, 1116
HpyAV	CCTTC	7 cut(s)	234, 319, 323, 775, 834, 899, 1011
HpyCH4III	ACNGT	4 cut(s)	243, 399, 596, 922
HpyCH4IV	ACGT	1 cut(s)	490
HpyCH4V	TGCA	7 cut(s)	194, 529, 767, 788, 1053, 1184, 1267
HpyF10VI	GCNNNNNNNGC	2 cut(s)	794, 803
HpyF3I	CTNAG	6 cut(s)	177, 273, 558, 600, 741, 756
HpySE526I	ACGT	1 cut(s)	490
Hsp92II	CATG	6 cut(s)	53, 194, 506, 629, 1067, 1216
HspAI	GCGC	1 cut(s)	412
KspAI	GTTAAC	1 cut(s)	1116
Kzo9I	GATC	9 cut(s)	107, 214, 403, 428, 617, 649, 674, 1039, 1144
LguI	GCTCTTC	1 cut(s)	244
LmnI	GCTCC	8 cut(s)	46, 72, 151, 305, 354, 721, 737, 1096
Lsp1109I	GCAGC	6 cut(s)	682, 772, 838, 1065, 1248, 1251
LweI	GCATC	3 cut(s)	433, 742, 754
MaeI	CTAG	2 cut(s)	81, 459
MaeII	ACGT	1 cut(s)	490
MaeIII	GTNAC	4 cut(s)	170, 563, 877, 995
MalI	GATC	9 cut(s)	109, 216, 405, 430, 619, 651, 676, 1041, 1146
MboI	GATC	9 cut(s)	107, 214, 403, 428, 617, 649, 674, 1039, 1144
MboII	GAAGA	5 cut(s)	41, 261, 393, 423, 603
MflI	RGATCY	2 cut(s)	674, 1144
MhlI	GDGCHC	4 cut(s)	77, 148, 256, 606
MluCI	AATT	3 cut(s)	477, 727, 1232
MlyI	GAGTC	2 cut(s)	379, 876
MmeI	TCCRAC	1 cut(s)	156
MseI	TTAA	2 cut(s)	245, 1115
MspI	CCGG	1 cut(s)	1103
MwoI	GCNNNNNNNGC	2 cut(s)	794, 803
NdeII	GATC	9 cut(s)	107, 214, 403, 428, 617, 649, 674, 1039, 1144
NlaIII	CATG	6 cut(s)	53, 194, 506, 629, 1067, 1216
NlaIV	GGNNCC	4 cut(s)	74, 200, 656, 723
NmeAIII	GCCGAG	1 cut(s)	1274
NmuCI	GTSAC	2 cut(s)	170, 563
NspI	RCATGY	2 cut(s)	194, 1067
PaeI	GCATGC	1 cut(s)	194
PceI	AGGCCT	1 cut(s)	1132
PciSI	GCTCTTC	1 cut(s)	244
PfeI	GAWTC	4 cut(s)	32, 88, 499, 708
PkrI	GCNGC	7 cut(s)	697, 787, 853, 933, 1055, 1263, 1266
PleI	GAGTC	2 cut(s)	378, 875
PpsI	GAGTC	2 cut(s)	378, 875
PpuMI	RGGWCCY	1 cut(s)	198
Psp124BI	GAGCTC	1 cut(s)	256
Psp5II	RGGWCCY	1 cut(s)	198
PspN4I	GGNNCC	4 cut(s)	74, 200, 656, 723
PspPI	GGNCC	2 cut(s)	129, 198
PspPPI	RGGWCCY	1 cut(s)	198
PstI	CTGCAG	2 cut(s)	790, 1055
PsuI	RGATCY	2 cut(s)	674, 1144
SacI	GAGCTC	1 cut(s)	256
SapI	GCTCTTC	1 cut(s)	244
SaqAI	TTAA	2 cut(s)	245, 1115
SatI	GCNGC	7 cut(s)	696, 786, 852, 932, 1054, 1262, 1265
Sau3AI	GATC	9 cut(s)	107, 214, 403, 428, 617, 649, 674, 1039, 1144
Sau96I	GGNCC	2 cut(s)	129, 198
SchI	GAGTC	2 cut(s)	379, 876
SduI	GDGCHC	4 cut(s)	77, 148, 256, 606
SfaNI	GCATC	3 cut(s)	433, 742, 754
SfcI	CTRYAG	3 cut(s)	786, 1035, 1051
SinI	GGWCC	2 cut(s)	129, 198
SmlI	CTYRAG	1 cut(s)	255
SmoI	CTYRAG	1 cut(s)	255
SphI	GCATGC	1 cut(s)	194
Sse9I	AATT	3 cut(s)	477, 727, 1232
SseBI	AGGCCT	1 cut(s)	1132
SsiI	CCGC	4 cut(s)	631, 854, 931, 1081
SspMI	CTAG	2 cut(s)	81, 459
SstI	GAGCTC	1 cut(s)	256
StuI	AGGCCT	1 cut(s)	1132
StyI	CCWWGG	1 cut(s)	798
TaaI	ACNGT	4 cut(s)	243, 399, 596, 922
TaiI	ACGT	1 cut(s)	493
TaqI	TCGA	4 cut(s)	97, 118, 427, 1188
TaqII	GACCGA	1 cut(s)	363
TasI	AATT	3 cut(s)	477, 727, 1232
TauI	GCSGC	1 cut(s)	934
TfiI	GAWTC	4 cut(s)	32, 88, 499, 708
Tru1I	TTAA	2 cut(s)	245, 1115
Tru9I	TTAA	2 cut(s)	245, 1115
TscAI	CASTG	2 cut(s)	345, 601
TseFI	GTSAC	2 cut(s)	170, 563
TseI	GCWGC	6 cut(s)	695, 785, 851, 1053, 1261, 1264
Tsp45I	GTSAC	2 cut(s)	170, 563
TspDTI	ATGAA	4 cut(s)	794, 816, 1191, 1221
TspGWI	ACGGA	1 cut(s)	701
TspRI	CASTG	2 cut(s)	345, 601
VpaK11BI	GGWCC	2 cut(s)	129, 198
XapI	RAATTY	2 cut(s)	727, 1232
XbaI	TCTAGA	1 cut(s)	80
XceI	RCATGY	2 cut(s)	194, 1067
XmiI	GTMKAC	1 cut(s)	635
XspI	CTAG	2 cut(s)	81, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.