Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002746

Physical Location & Seq

Genomic Coordinates Forward (+)

22029759 .. 22037571

Gene Structure 7813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00349230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGGGGCGTAATCTAAAAAATCATTCCGAATCTCCAGTACGTGACCATGGATCTCCTCCTAGAAGGAGCCCTTATAGGAAGAGTCAATCTCAAACAGAAAGATCACCTCATCGACATAGAAAGTCCCAGAGAGGCAGTTCTCCCGTTAGAGAGAAGCATTCAAGTCGCCCCAAGTCTCCCAAGCATGCAAGGTCGCCCACTCCTCCTCCTCGCTCTCCTTCTCCCCGCACCAAACGGTTAAGAAGAGCTCAAGCTGGAAGAGTGCCTGAGAGAGAACATGAAAGGAACAATGGTAGGGGGATCGGTAGGGATTTACAGGTGGGGGGTCCAGAGAGAGAAGTTGGGAGTGATAGAAATGAGAAATTGTTGGGAAGGGATCATACCGATGGTAAATCTTCAAGATCAAGGCATGTTACCTCTCCATCAGATCGACACCGGAGGAGTAGGCATAGATCTCCCTCACCTCAACATCCTGATGAAACAAAATATGGAGATAAAGTAATTGAGGGCCATGAAAGAAATCATCACAGAGGGAGTGATAGAAGTATGCAAAGGGAAAAGGGCTCAGATAGGGAAAATGAGACTGAAGGAATGGAGATAAGTTCTGGTCATAGGTCTTCAAGATCGAGACACAGGGAGTCTACTTCACCATTGAATGGACACCAGAAGAAAAAACACAAAACTCATTTGCCTCGACAAGCTGCAGATACCAGAGCTCACTATGAGGTGCCAGAGTCAAGGGAAGCTGAGCATGGGATTGATGAGAATGATTCAGTAGCAATGATGAGAGCTGCTGAGGAGGCCTTGGAAGCACAGAAAAAGCAAAAACCTTCGTTTGAGCTATCTGGAAAGCTTGCTGCAGAAACCAATAGATTCAGGGGTATAACACTATTATACACTGAGCCAGCAGAAGGACGGCCACCTCGTGTAAAATGGCGGCTTTATGTTTTTAAGGGTGGTGAAGCTTTTAATGAACCCATTAAGATACATCGCCAAAGCTGTTACCTTTTTGGGAGGGAAAGACGGGTGGCAGACATCCCTACGGATCACCCATCCTGCAGCAAGCAACATGCTGTTCTACAATTCCGGCAAGTAGAAAAGGAGCAACCAGATGGTACATTGTCAAAGGAAGTCAAGCCTTACGTAATGGATCTTGGAAGCACAAATAAAACTTTTGTCAATGAAACTGCAATTGAACCTCAGCGATATTATGAACTTATGGAAAAAGACACGATTAAATTTGGTAATAGTAGCCGAGAGTATGTTCTACTGCACGAGAATTCTATGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008283 GO:0009507 GO:0009536 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0019222 GO:0031047 GO:0031050 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0040008 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048519 GO:0048638 GO:0050789 GO:0050793 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

430

Amino Acids

49.48

Weight (kDa)

10.11

Isoelectric Point (pI)

67.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FHA	PF00498	335 - 415	1.1e-15	FHA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24410 AT3G20550
fragaria_vesca	FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_6g43590
malus_domestica	MD03G1208700.v1.1 MD06G1125500.v1.1 MD11G1223400.v1.1
prunus_persica	Prupe.4G208000_v2.0.a1
pyrus_communis	pycom06g11580 pycom11g19700
rosa_chinensis	RchiOBHm_Chr2g0160171 RchiOBHm_Chr4g0405041 RchiOBHm_Chr5g0037921
rosa_laevigata	RLG00000008882 RLG00000021201 RLG00000033823
rosa_multiflora	Rmu_sc0001744.1_g000004 Rmu_ssc0000241.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042940 Rroxscaffold_5G00349230
rosa_rugosa	Rorug04G0052500 Rorug05G0169400 Rorug05G0169500 Rorug05G0169600
rosa_samantha	Rh2BG560700 Rh4AG127600 Rh4BG121300 Rh4CG135400 Rh4DG121700 Rh5AG257700 Rh5BG260500 Rh5CG293100
rosa_wichuraiana	Rw2G045270 Rw4G010330 Rw5G023890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	727
AccB7I	CCANNNNNTGG	1 cut(s)	656
AccI	GTMKAC	1 cut(s)	641
AciI	CCGC	2 cut(s)	226, 937
AclWI	GGATC	5 cut(s)	58, 308, 384, 1053, 1158
AcoI	YGGCCR	1 cut(s)	917
AcsI	RAATTY	2 cut(s)	1238, 1279
AcuI	CTGAAG	1 cut(s)	606
AdeI	CACNNNGTG	1 cut(s)	926
AfaI	GTAC	2 cut(s)	39, 1117
AfiI	CCNNNNNNNGG	2 cut(s)	656, 911
AgsI	TTSAA	5 cut(s)	162, 399, 621, 655, 1196
Alw21I	GWGCWC	2 cut(s)	250, 718
Alw26I	GTCTC	3 cut(s)	180, 575, 622
AlwI	GGATC	5 cut(s)	58, 308, 384, 1053, 1158
AoxI	GGCC	3 cut(s)	508, 801, 917
ApeKI	GCWGC	4 cut(s)	701, 791, 857, 1059
ApoI	RAATTY	2 cut(s)	1238, 1279
AspS9I	GGNCC	2 cut(s)	326, 508
AsuHPI	GGTGA	5 cut(s)	96, 453, 639, 971, 1040
AvaII	GGWCC	1 cut(s)	326
BanI	GGYRCC	1 cut(s)	727
BanII	GRGCYC	4 cut(s)	71, 250, 566, 718
BarI	GAAGNNNNNNTAC	2 cut(s)	364, 396
BauI	CACGAG	2 cut(s)	924, 1274
BbsI	GAAGAC	1 cut(s)	609
Bbv12I	GWGCWC	2 cut(s)	250, 718
BbvCI	CCTCAGC	2 cut(s)	795, 1200
BbvI	GCAGC	4 cut(s)	688, 778, 844, 1071
BccI	CCATC	4 cut(s)	380, 430, 1060, 1106
BceAI	ACGGC	1 cut(s)	932
BcgI	CGANNNNNNTGC	2 cut(s)	146, 180
BcoDI	GTCTC	3 cut(s)	180, 575, 622
BfaI	CTAG	1 cut(s)	60
BfmI	CTRYAG	3 cut(s)	702, 858, 1057
BglII	AGATCT	1 cut(s)	452
BisI	GCNGC	5 cut(s)	702, 792, 858, 938, 1060
BlpI	GCTNAGC	1 cut(s)	747
BlsI	GCNGC	5 cut(s)	703, 793, 859, 939, 1061
Bme18I	GGWCC	1 cut(s)	326
BmgT120I	GGNCC	2 cut(s)	326, 508
BmiI	GGNNCC	3 cut(s)	68, 327, 729
BpiI	GAAGAC	1 cut(s)	609
BplI	GAGNNNNNCTC	2 cut(s)	73, 105
BpmI	CTGGAG	1 cut(s)	18
Bpu10I	CCTNAGC	2 cut(s)	795, 1200
Bpu1102I	GCTNAGC	1 cut(s)	747
BpuEI	CTTGAG	1 cut(s)	234
BsaAI	YACGTR	2 cut(s)	41, 1144
BsaJI	CCNNGG	2 cut(s)	46, 804
BsaWI	WCCGGW	1 cut(s)	435
BsaXI	ACNNNNNCTCC	4 cut(s)	190, 220, 483, 513
Bsc4I	CCNNNNNNNGG	2 cut(s)	656, 911
Bse1I	ACTGG	1 cut(s)	35
Bse3DI	GCAATG	1 cut(s)	786
BseDI	CCNNGG	2 cut(s)	46, 804
BseGI	GGATG	3 cut(s)	469, 1035, 1052
BseLI	CCNNNNNNNGG	2 cut(s)	656, 911
BseMI	GCAATG	1 cut(s)	786
BseMII	CTCAG	6 cut(s)	258, 579, 738, 786, 891, 1214
BseNI	ACTGG	1 cut(s)	35
BseRI	GAGGAG	6 cut(s)	45, 192, 195, 198, 454, 812
BseXI	GCAGC	4 cut(s)	688, 778, 844, 1071
BsgI	GTGCAG	1 cut(s)	1256
BshFI	GGCC	3 cut(s)	510, 803, 919
BshNI	GGYRCC	1 cut(s)	727
BsiHKAI	GWGCWC	2 cut(s)	250, 718
BsiSI	CCGG	2 cut(s)	436, 1087
BslFI	GGGAC	1 cut(s)	109
BslI	CCNNNNNNNGG	2 cut(s)	656, 911
BsmAI	GTCTC	3 cut(s)	180, 575, 622
BsmFI	GGGAC	1 cut(s)	109
BsmI	GAATGC	1 cut(s)	157
BsnI	GGCC	3 cut(s)	510, 803, 919
Bsp1286I	GDGCHC	4 cut(s)	71, 250, 566, 718
Bsp1720I	GCTNAGC	1 cut(s)	747
Bsp19I	CCATGG	1 cut(s)	46
BspACI	CCGC	2 cut(s)	226, 937
BspANI	GGCC	3 cut(s)	510, 803, 919
BspCNI	CTCAG	6 cut(s)	259, 578, 739, 787, 892, 1213
BspLI	GGNNCC	3 cut(s)	68, 327, 729
BspMAI	CTGCAG	3 cut(s)	706, 862, 1061
BspPI	GGATC	5 cut(s)	58, 308, 384, 1053, 1158
BspQI	GCTCTTC	1 cut(s)	238
BspT107I	GGYRCC	1 cut(s)	727
BsrDI	GCAATG	1 cut(s)	786
BsrI	ACTGG	1 cut(s)	35
BssECI	CCNNGG	2 cut(s)	46, 804
BssSI	CACGAG	2 cut(s)	924, 1274
BssT1I	CCWWGG	2 cut(s)	46, 804
Bst2BI	CACGAG	2 cut(s)	924, 1274
Bst4CI	ACNGT	1 cut(s)	237
Bst6I	CTCTTC	3 cut(s)	74, 238, 253
BstBAI	YACGTR	2 cut(s)	41, 1144
BstC8I	GCNNGC	4 cut(s)	186, 855, 906, 1064
BstDEI	CTNAG	6 cut(s)	267, 565, 747, 795, 900, 1200
BstDSI	CCRYGG	1 cut(s)	46
BstF5I	GGATG	3 cut(s)	469, 1035, 1052
BstMAI	GTCTC	3 cut(s)	180, 575, 622
BstMWI	GCNNNNNNNGC	2 cut(s)	800, 809
BstNSI	RCATGY	3 cut(s)	188, 413, 1073
BstSFI	CTRYAG	3 cut(s)	702, 858, 1057
BstSNI	TACGTA	1 cut(s)	1144
BstV1I	GCAGC	4 cut(s)	688, 778, 844, 1071
BstV2I	GAAGAC	1 cut(s)	609
BstX2I	RGATCY	3 cut(s)	50, 452, 1150
BstYI	RGATCY	3 cut(s)	50, 452, 1150
BsuRI	GGCC	3 cut(s)	510, 803, 919
BtgI	CCRYGG	1 cut(s)	46
BtgZI	GCGATG	1 cut(s)	974
BtsCI	GGATG	3 cut(s)	469, 1035, 1052
BtsIMutI	CAGTG	1 cut(s)	897
Cac8I	GCNNGC	4 cut(s)	186, 855, 906, 1064
Cfr13I	GGNCC	2 cut(s)	326, 508
Csp6I	GTAC	2 cut(s)	38, 1116
CviAII	CATG	7 cut(s)	47, 185, 278, 410, 512, 752, 1070
CviQI	GTAC	2 cut(s)	38, 1116
DdeI	CTNAG	6 cut(s)	267, 565, 747, 795, 900, 1200
DraIII	CACNNNGTG	1 cut(s)	926
EaeI	YGGCCR	1 cut(s)	917
Eam1104I	CTCTTC	3 cut(s)	74, 238, 253
EarI	CTCTTC	3 cut(s)	74, 238, 253
Ecl136II	GAGCTC	2 cut(s)	248, 716
Eco105I	TACGTA	1 cut(s)	1144
Eco130I	CCWWGG	2 cut(s)	46, 804
Eco147I	AGGCCT	1 cut(s)	803
Eco24I	GRGCYC	4 cut(s)	71, 250, 566, 718
Eco47I	GGWCC	1 cut(s)	326
Eco53kI	GAGCTC	2 cut(s)	248, 716
Eco57I	CTGAAG	1 cut(s)	606
EcoICRI	GAGCTC	2 cut(s)	248, 716
EcoRI	GAATTC	1 cut(s)	1279
EcoT14I	CCWWGG	2 cut(s)	46, 804
EcoT38I	GRGCYC	4 cut(s)	71, 250, 566, 718
ErhI	CCWWGG	2 cut(s)	46, 804
FaeI	CATG	7 cut(s)	50, 188, 281, 413, 515, 755, 1073
FalI	AAGNNNNNCTT	2 cut(s)	55, 87
FaqI	GGGAC	1 cut(s)	109
FatI	CATG	7 cut(s)	46, 184, 277, 409, 511, 751, 1069
FauI	CCCGC	1 cut(s)	233
FblI	GTMKAC	1 cut(s)	641
Fnu4HI	GCNGC	5 cut(s)	702, 792, 858, 938, 1060
FokI	GGATG	3 cut(s)	456, 1022, 1039
FriOI	GRGCYC	4 cut(s)	71, 250, 566, 718
Fsp4HI	GCNGC	5 cut(s)	702, 792, 858, 938, 1060
FspBI	CTAG	1 cut(s)	60
GluI	GCNGC	5 cut(s)	702, 792, 858, 938, 1060
GsuI	CTGGAG	1 cut(s)	18
HaeIII	GGCC	3 cut(s)	510, 803, 919
HapII	CCGG	2 cut(s)	436, 1087
Hin1II	CATG	7 cut(s)	50, 188, 281, 413, 515, 755, 1073
HindIII	AAGCTT	2 cut(s)	851, 963
HinfI	GANTC	6 cut(s)	29, 82, 638, 734, 770, 873
HpaII	CCGG	2 cut(s)	436, 1087
HphI	GGTGA	5 cut(s)	96, 453, 639, 971, 1040
Hpy166II	GTNNAC	1 cut(s)	642
Hpy188I	TCNGA	3 cut(s)	28, 427, 568
Hpy188III	TCNNGA	6 cut(s)	329, 399, 473, 621, 627, 846
Hpy8I	GTNNAC	1 cut(s)	642
HpyAV	CCTTC	6 cut(s)	57, 228, 366, 581, 840, 905
HpyCH4III	ACNGT	1 cut(s)	237
HpyCH4IV	ACGT	2 cut(s)	40, 1143
HpyCH4V	TGCA	7 cut(s)	188, 550, 704, 860, 1059, 1190, 1273
HpyF10VI	GCNNNNNNNGC	2 cut(s)	800, 809
HpyF3I	CTNAG	6 cut(s)	267, 565, 747, 795, 900, 1200
HpySE526I	ACGT	2 cut(s)	40, 1143
Hsp92II	CATG	7 cut(s)	50, 188, 281, 413, 515, 755, 1073
LguI	GCTCTTC	1 cut(s)	238
LmnI	GCTCC	2 cut(s)	66, 1102
Lsp1109I	GCAGC	4 cut(s)	688, 778, 844, 1071
MaeI	CTAG	1 cut(s)	60
MaeII	ACGT	2 cut(s)	40, 1143
MaeIII	GTNAC	3 cut(s)	41, 412, 1001
MboII	GAAGA	6 cut(s)	91, 255, 270, 387, 609, 679
MfeI	CAATTG	1 cut(s)	1191
MflI	RGATCY	3 cut(s)	50, 452, 1150
MhlI	GDGCHC	4 cut(s)	71, 250, 566, 718
MluCI	AATT	6 cut(s)	362, 501, 1082, 1191, 1238, 1279
MlyI	GAGTC	3 cut(s)	91, 647, 743
MseI	TTAA	5 cut(s)	239, 951, 969, 981, 1236
MslI	CAYNNNNRTG	2 cut(s)	384, 474
MspI	CCGG	2 cut(s)	436, 1087
MunI	CAATTG	1 cut(s)	1191
Mva1269I	GAATGC	1 cut(s)	157
MwoI	GCNNNNNNNGC	2 cut(s)	800, 809
NcoI	CCATGG	1 cut(s)	46
NlaIII	CATG	7 cut(s)	50, 188, 281, 413, 515, 755, 1073
NlaIV	GGNNCC	3 cut(s)	68, 327, 729
NmeAIII	GCCGAG	1 cut(s)	1280
NmuCI	GTSAC	1 cut(s)	41
NspI	RCATGY	3 cut(s)	188, 413, 1073
PaeI	GCATGC	1 cut(s)	188
PceI	AGGCCT	1 cut(s)	803
PciSI	GCTCTTC	1 cut(s)	238
PcsI	WCGNNNNNNNCGW	1 cut(s)	922
PctI	GAATGC	1 cut(s)	157
PfeI	GAWTC	3 cut(s)	29, 770, 873
PflMI	CCANNNNNTGG	1 cut(s)	656
PkrI	GCNGC	5 cut(s)	703, 793, 859, 939, 1061
PleI	GAGTC	3 cut(s)	90, 646, 742
PpsI	GAGTC	3 cut(s)	90, 646, 742
Ppu21I	YACGTR	2 cut(s)	41, 1144
Psp124BI	GAGCTC	2 cut(s)	250, 718
PspN4I	GGNNCC	3 cut(s)	68, 327, 729
PspPI	GGNCC	2 cut(s)	326, 508
PstI	CTGCAG	3 cut(s)	706, 862, 1061
PsuI	RGATCY	3 cut(s)	50, 452, 1150
RsaI	GTAC	2 cut(s)	39, 1117
RsaNI	GTAC	2 cut(s)	38, 1116
RseI	CAYNNNNRTG	2 cut(s)	384, 474
SacI	GAGCTC	2 cut(s)	250, 718
SapI	GCTCTTC	1 cut(s)	238
SaqAI	TTAA	5 cut(s)	239, 951, 969, 981, 1236
SatI	GCNGC	5 cut(s)	702, 792, 858, 938, 1060
Sau96I	GGNCC	2 cut(s)	326, 508
SchI	GAGTC	3 cut(s)	91, 647, 743
SduI	GDGCHC	4 cut(s)	71, 250, 566, 718
SfcI	CTRYAG	3 cut(s)	702, 858, 1057
SinI	GGWCC	1 cut(s)	326
SmiMI	CAYNNNNRTG	2 cut(s)	384, 474
SmlI	CTYRAG	1 cut(s)	249
SmoI	CTYRAG	1 cut(s)	249
SnaBI	TACGTA	1 cut(s)	1144
SphI	GCATGC	1 cut(s)	188
Sse9I	AATT	6 cut(s)	362, 501, 1082, 1191, 1238, 1279
SseBI	AGGCCT	1 cut(s)	803
SsiI	CCGC	2 cut(s)	226, 937
SspMI	CTAG	1 cut(s)	60
SstI	GAGCTC	2 cut(s)	250, 718
StuI	AGGCCT	1 cut(s)	803
StyI	CCWWGG	2 cut(s)	46, 804
TaaI	ACNGT	1 cut(s)	237
TaiI	ACGT	2 cut(s)	43, 1146
TaqI	TCGA	4 cut(s)	112, 430, 626, 694
TasI	AATT	6 cut(s)	362, 501, 1082, 1191, 1238, 1279
TauI	GCSGC	1 cut(s)	940
TfiI	GAWTC	3 cut(s)	29, 770, 873
Tru1I	TTAA	5 cut(s)	239, 951, 969, 981, 1236
Tru9I	TTAA	5 cut(s)	239, 951, 969, 981, 1236
TscAI	CASTG	1 cut(s)	904
TseFI	GTSAC	1 cut(s)	41
TseI	GCWGC	4 cut(s)	701, 791, 857, 1059
Tsp45I	GTSAC	1 cut(s)	41
TspDTI	ATGAA	6 cut(s)	294, 492, 528, 987, 1197, 1227
TspGWI	ACGGA	1 cut(s)	1058
TspRI	CASTG	1 cut(s)	904
Van91I	CCANNNNNTGG	1 cut(s)	656
VpaK11BI	GGWCC	1 cut(s)	326
XapI	RAATTY	2 cut(s)	1238, 1279
XceI	RCATGY	3 cut(s)	188, 413, 1073
XmiI	GTMKAC	1 cut(s)	641
XspI	CTAG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.