Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000241.1

Orthogroup ID

OG0002746

Physical Location & Seq

Genomic Coordinates Reverse (-)

14544 .. 20230

Gene Structure 5687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000241.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

tctccagtgagggaccgtgggtctcctcgtaggaggaagagtcaatctcgaacagagagatcacctactcgacatagaaagtccaacaggggaagttctccaccaagagagaaacattcaagtcgccccaagtctcccaagcatgcaaggtcaccctctcctcctcctcgctctccttctccccggacaaaacggctaagaagagctgaagctggaagagtgcctgggagagaacatgaaaggatcaatgatagggggatcagtagggatttacaggaacgtggttcagagagagatgttgggagtgatagaaaggagagattgtcaggaaggaatgacaccgatgataaatcttcaagaacaaggcgtggtacttctccatcagatcgacaccgcacgagtaggcatagatctcactcacctctacatgctggtgatacaagagatggggagaaagtaattgagggccgtggaagaaatcgtagtagagggagtgagaaaagcatgcacagggaaaaaagttcagatggggaaaacgagactgaaagaatggagagaaggacagcaaaagacagcactggtcataagtcttcaagatcaagacatgggcagtcgacttctccattgaatggacaccacaagaacagacaccgaactcattcacctcaacaagctgcagataccagagcccgtgatgaggtgccagagtcaagggaggctgaggatgggattgatgagaatgattcagtagctatgatgagggctgctgaggaagctttggaagcacagaaaaagcaaaaaccttcatttgagctgtctggaaagcttgctgcggaaaccaatagattcaggggtataacactgttatacactgagccagcagaaggacggccacctcatgtaaaatggcggctttatgttttcaagggtggtgaagttcttaatgatcccattaagatacatcggcaaagctgttaccttttcgggagggaaagaagggtggcagacatccctacagatcacccatcctgcagcaaacaacatgctgttatacagttccggcaagtagagaaggaggaacctgatggtacattgtcgaaggaagtaaagccttacataatggaccttggaagcacaaataagacctttgttaatgaaagtgcaattgaacctcagcgatattatgaactgatggaaagagacacgatcaaatttggtaatagtagccgagagtatgtgctactgcacgagaattctatggattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008283 GO:0009507 GO:0009536 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0019222 GO:0031047 GO:0031050 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0040008 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048519 GO:0048638 GO:0050789 GO:0050793 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

421

Amino Acids

48.26

Weight (kDa)

10.26

Isoelectric Point (pI)

67.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24410 AT3G20550
fragaria_vesca	FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_6g43590
malus_domestica	MD03G1208700.v1.1 MD06G1125500.v1.1 MD11G1223400.v1.1
prunus_persica	Prupe.4G208000_v2.0.a1
pyrus_communis	pycom06g11580 pycom11g19700
rosa_chinensis	RchiOBHm_Chr2g0160171 RchiOBHm_Chr4g0405041 RchiOBHm_Chr5g0037921
rosa_laevigata	RLG00000008882 RLG00000021201 RLG00000033823
rosa_multiflora	Rmu_sc0001744.1_g000004 Rmu_ssc0000241.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042940 Rroxscaffold_5G00349230
rosa_rugosa	Rorug04G0052500 Rorug05G0169400 Rorug05G0169500 Rorug05G0169600
rosa_samantha	Rh2BG560700 Rh4AG127600 Rh4BG121300 Rh4CG135400 Rh4DG121700 Rh5AG257700 Rh5BG260500 Rh5CG293100
rosa_wichuraiana	Rw2G045270 Rw4G010330 Rw5G023890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	700
AccB7I	CCANNNNNTGG	1 cut(s)	629
AccI	GTMKAC	1 cut(s)	614
AciI	CCGC	3 cut(s)	394, 833, 910
AclWI	GGATC	3 cut(s)	251, 266, 941
AcoI	YGGCCR	1 cut(s)	890
AcsI	RAATTY	2 cut(s)	1211, 1252
AcuI	CTGAAG	1 cut(s)	228
AfaI	GTAC	2 cut(s)	373, 1090
AfiI	CCNNNNNNNGG	3 cut(s)	629, 697, 884
AgsI	TTSAA	6 cut(s)	120, 357, 594, 628, 925, 1169
AhdI	GACNNNNNGTC	1 cut(s)	19
AjnI	CCWGG	1 cut(s)	223
AluBI	AGCT	8 cut(s)	206, 212, 674, 752, 776, 814, 826, 972
AluI	AGCT	8 cut(s)	206, 212, 674, 752, 776, 814, 826, 972
Alw26I	GTCTC	4 cut(s)	27, 138, 533, 1194
AlwI	GGATC	3 cut(s)	251, 266, 941
AoxI	GGCC	2 cut(s)	466, 890
ApeKI	GCWGC	4 cut(s)	674, 764, 830, 1032
ApoI	RAATTY	2 cut(s)	1211, 1252
Asp700I	GAANNNNTTC	1 cut(s)	658
AspS9I	GGNCC	3 cut(s)	13, 466, 1123
AsuC2I	CCSGG	1 cut(s)	184
AsuHPI	GGTGA	7 cut(s)	54, 144, 411, 446, 654, 944, 1013
AvaII	GGWCC	2 cut(s)	13, 1123
BanI	GGYRCC	1 cut(s)	700
BanII	GRGCYC	1 cut(s)	691
BauI	CACGAG	2 cut(s)	397, 1247
BbsI	GAAGAC	1 cut(s)	582
BbvCI	CCTCAGC	3 cut(s)	720, 768, 1173
BbvI	GCAGC	4 cut(s)	661, 751, 817, 1044
BccI	CCATC	7 cut(s)	388, 440, 521, 719, 1033, 1079, 1186
BceAI	ACGGC	3 cut(s)	209, 453, 905
BciT130I	CCWGG	1 cut(s)	225
BcnI	CCSGG	1 cut(s)	184
BcoDI	GTCTC	4 cut(s)	27, 138, 533, 1194
BfmI	CTRYAG	3 cut(s)	675, 1014, 1030
BglII	AGATCT	1 cut(s)	410
BisI	GCNGC	5 cut(s)	675, 765, 831, 911, 1033
BlsI	GCNGC	5 cut(s)	676, 766, 832, 912, 1034
Bme1390I	CCNGG	2 cut(s)	184, 225
Bme18I	GGWCC	2 cut(s)	13, 1123
BmeRI	GACNNNNNGTC	1 cut(s)	19
BmgT120I	GGNCC	3 cut(s)	13, 466, 1123
BmiI	GGNNCC	3 cut(s)	14, 702, 1080
BmrFI	CCNGG	2 cut(s)	184, 225
BpiI	GAAGAC	1 cut(s)	582
BplI	GAGNNNNNCTC	2 cut(s)	31, 63
Bpu10I	CCTNAGC	3 cut(s)	720, 768, 1173
BpuMI	CCSGG	1 cut(s)	184
BsaI	GGTCTC	1 cut(s)	27
BsaJI	CCNNGG	5 cut(s)	16, 182, 224, 469, 1126
BsaXI	ACNNNNNCTCC	4 cut(s)	25, 55, 308, 338
Bsc4I	CCNNNNNNNGG	3 cut(s)	629, 697, 884
Bse1I	ACTGG	2 cut(s)	5, 583
BseBI	CCWGG	1 cut(s)	225
BseDI	CCNNGG	5 cut(s)	16, 182, 224, 469, 1126
BseGI	GGATG	3 cut(s)	730, 1008, 1025
BseLI	CCNNNNNNNGG	3 cut(s)	629, 697, 884
BseMII	CTCAG	4 cut(s)	711, 759, 864, 1187
BseNI	ACTGG	2 cut(s)	5, 583
BseRI	GAGGAG	4 cut(s)	15, 150, 153, 156
BseXI	GCAGC	4 cut(s)	661, 751, 817, 1044
BsgI	GTGCAG	1 cut(s)	1229
BshFI	GGCC	2 cut(s)	468, 892
BshNI	GGYRCC	1 cut(s)	700
BsiSI	CCGG	2 cut(s)	184, 1060
BslFI	GGGAC	1 cut(s)	26
BslI	CCNNNNNNNGG	3 cut(s)	629, 697, 884
BsmAI	GTCTC	4 cut(s)	27, 138, 533, 1194
BsmFI	GGGAC	1 cut(s)	26
BsnI	GGCC	2 cut(s)	468, 892
Bso31I	GGTCTC	1 cut(s)	27
Bsp1286I	GDGCHC	1 cut(s)	691
Bsp143I	GATC	9 cut(s)	59, 243, 258, 385, 410, 596, 946, 1018, 1206
BspACI	CCGC	3 cut(s)	394, 833, 910
BspANI	GGCC	2 cut(s)	468, 892
BspCNI	CTCAG	4 cut(s)	712, 760, 865, 1186
BspLI	GGNNCC	3 cut(s)	14, 702, 1080
BspMAI	CTGCAG	2 cut(s)	679, 1034
BspPI	GGATC	3 cut(s)	251, 266, 941
BspQI	GCTCTTC	1 cut(s)	196
BspT107I	GGYRCC	1 cut(s)	700
BspTNI	GGTCTC	1 cut(s)	27
BsrI	ACTGG	2 cut(s)	5, 583
BssECI	CCNNGG	5 cut(s)	16, 182, 224, 469, 1126
BssMI	GATC	9 cut(s)	59, 243, 258, 385, 410, 596, 946, 1018, 1206
BssSI	CACGAG	2 cut(s)	397, 1247
BssT1I	CCWWGG	1 cut(s)	1126
Bst2BI	CACGAG	2 cut(s)	397, 1247
Bst2UI	CCWGG	1 cut(s)	225
Bst4CI	ACNGT	3 cut(s)	17, 864, 1056
Bst6I	CTCTTC	3 cut(s)	32, 196, 211
BstC8I	GCNNGC	4 cut(s)	144, 506, 828, 879
BstDEI	CTNAG	5 cut(s)	197, 720, 768, 873, 1173
BstDSI	CCRYGG	2 cut(s)	16, 469
BstEII	GGTNACC	1 cut(s)	150
BstF5I	GGATG	3 cut(s)	730, 1008, 1025
BstKTI	GATC	9 cut(s)	62, 246, 261, 388, 413, 599, 949, 1021, 1209
BstMAI	GTCTC	4 cut(s)	27, 138, 533, 1194
BstMBI	GATC	9 cut(s)	59, 243, 258, 385, 410, 596, 946, 1018, 1206
BstMWI	GCNNNNNNNGC	2 cut(s)	773, 782
BstNI	CCWGG	1 cut(s)	225
BstNSI	RCATGY	4 cut(s)	146, 431, 508, 1046
BstPI	GGTNACC	1 cut(s)	150
BstSCI	CCNGG	2 cut(s)	182, 223
BstSFI	CTRYAG	3 cut(s)	675, 1014, 1030
BstV1I	GCAGC	4 cut(s)	661, 751, 817, 1044
BstV2I	GAAGAC	1 cut(s)	582
BstX2I	RGATCY	1 cut(s)	410
BstYI	RGATCY	1 cut(s)	410
BsuRI	GGCC	2 cut(s)	468, 892
BtgI	CCRYGG	2 cut(s)	16, 469
BtsCI	GGATG	3 cut(s)	730, 1008, 1025
BtsIMutI	CAGTG	4 cut(s)	12, 576, 860, 870
Cac8I	GCNNGC	4 cut(s)	144, 506, 828, 879
Cfr13I	GGNCC	3 cut(s)	13, 466, 1123
Csp6I	GTAC	2 cut(s)	372, 1089
CviAII	CATG	7 cut(s)	143, 236, 428, 505, 605, 899, 1043
CviQI	GTAC	2 cut(s)	372, 1089
DdeI	CTNAG	5 cut(s)	197, 720, 768, 873, 1173
DpnI	GATC	9 cut(s)	61, 245, 260, 387, 412, 598, 948, 1020, 1208
DpnII	GATC	9 cut(s)	59, 243, 258, 385, 410, 596, 946, 1018, 1206
DriI	GACNNNNNGTC	1 cut(s)	19
EaeI	YGGCCR	1 cut(s)	890
Eam1104I	CTCTTC	3 cut(s)	32, 196, 211
Eam1105I	GACNNNNNGTC	1 cut(s)	19
EarI	CTCTTC	3 cut(s)	32, 196, 211
Eco130I	CCWWGG	1 cut(s)	1126
Eco24I	GRGCYC	1 cut(s)	691
Eco31I	GGTCTC	1 cut(s)	27
Eco47I	GGWCC	2 cut(s)	13, 1123
Eco57I	CTGAAG	1 cut(s)	228
Eco91I	GGTNACC	1 cut(s)	150
EcoO65I	GGTNACC	1 cut(s)	150
EcoRI	GAATTC	1 cut(s)	1252
EcoRII	CCWGG	1 cut(s)	223
EcoT14I	CCWWGG	1 cut(s)	1126
EcoT38I	GRGCYC	1 cut(s)	691
ErhI	CCWWGG	1 cut(s)	1126
FaeI	CATG	7 cut(s)	146, 239, 431, 508, 608, 902, 1046
FaqI	GGGAC	1 cut(s)	26
FatI	CATG	7 cut(s)	142, 235, 427, 504, 604, 898, 1042
FblI	GTMKAC	1 cut(s)	614
Fnu4HI	GCNGC	5 cut(s)	675, 765, 831, 911, 1033
FokI	GGATG	3 cut(s)	737, 995, 1012
FriOI	GRGCYC	1 cut(s)	691
Fsp4HI	GCNGC	5 cut(s)	675, 765, 831, 911, 1033
GluI	GCNGC	5 cut(s)	675, 765, 831, 911, 1033
HaeIII	GGCC	2 cut(s)	468, 892
HapII	CCGG	2 cut(s)	184, 1060
Hin1II	CATG	7 cut(s)	146, 239, 431, 508, 608, 902, 1046
HincII	GTYRAC	1 cut(s)	615
HindII	GTYRAC	1 cut(s)	615
HindIII	AAGCTT	2 cut(s)	774, 824
HinfI	GANTC	4 cut(s)	40, 707, 743, 846
HpaII	CCGG	2 cut(s)	184, 1060
HphI	GGTGA	7 cut(s)	54, 144, 411, 446, 654, 944, 1013
Hpy166II	GTNNAC	1 cut(s)	615
Hpy188I	TCNGA	3 cut(s)	289, 385, 526
Hpy188III	TCNNGA	7 cut(s)	48, 327, 357, 594, 600, 819, 985
Hpy8I	GTNNAC	1 cut(s)	615
HpyAV	CCTTC	8 cut(s)	186, 324, 552, 813, 878, 990, 1066, 1093
HpyCH4III	ACNGT	3 cut(s)	17, 864, 1056
HpyCH4IV	ACGT	1 cut(s)	280
HpyCH4V	TGCA	6 cut(s)	146, 508, 677, 1032, 1163, 1246
HpyF10VI	GCNNNNNNNGC	2 cut(s)	773, 782
HpyF3I	CTNAG	5 cut(s)	197, 720, 768, 873, 1173
HpySE526I	ACGT	1 cut(s)	280
Hsp92II	CATG	7 cut(s)	146, 239, 431, 508, 608, 902, 1046
Kzo9I	GATC	9 cut(s)	59, 243, 258, 385, 410, 596, 946, 1018, 1206
LguI	GCTCTTC	1 cut(s)	196
Lsp1109I	GCAGC	4 cut(s)	661, 751, 817, 1044
MaeII	ACGT	1 cut(s)	280
MaeIII	GTNAC	2 cut(s)	150, 974
MalI	GATC	9 cut(s)	61, 245, 260, 387, 412, 598, 948, 1020, 1208
MboI	GATC	9 cut(s)	59, 243, 258, 385, 410, 596, 946, 1018, 1206
MboII	GAAGA	6 cut(s)	49, 213, 228, 345, 486, 582
MfeI	CAATTG	1 cut(s)	1164
MflI	RGATCY	1 cut(s)	410
MhlI	GDGCHC	1 cut(s)	691
MluCI	AATT	4 cut(s)	459, 1164, 1211, 1252
MlyI	GAGTC	2 cut(s)	49, 716
MmeI	TCCRAC	1 cut(s)	108
MroXI	GAANNNNTTC	1 cut(s)	658
MseI	TTAA	3 cut(s)	942, 954, 1152
MslI	CAYNNNNRTG	1 cut(s)	432
MspI	CCGG	2 cut(s)	184, 1060
MspR9I	CCNGG	2 cut(s)	184, 225
MunI	CAATTG	1 cut(s)	1164
MvaI	CCWGG	1 cut(s)	225
MwoI	GCNNNNNNNGC	2 cut(s)	773, 782
NciI	CCSGG	1 cut(s)	184
NdeII	GATC	9 cut(s)	59, 243, 258, 385, 410, 596, 946, 1018, 1206
NlaIII	CATG	7 cut(s)	146, 239, 431, 508, 608, 902, 1046
NlaIV	GGNNCC	3 cut(s)	14, 702, 1080
NmeAIII	GCCGAG	1 cut(s)	1253
NmuCI	GTSAC	1 cut(s)	150
NspI	RCATGY	4 cut(s)	146, 431, 508, 1046
PaeI	GCATGC	2 cut(s)	146, 508
PciSI	GCTCTTC	1 cut(s)	196
PdmI	GAANNNNTTC	1 cut(s)	658
PfeI	GAWTC	2 cut(s)	743, 846
PflMI	CCANNNNNTGG	1 cut(s)	629
PkrI	GCNGC	5 cut(s)	676, 766, 832, 912, 1034
PleI	GAGTC	2 cut(s)	48, 715
PpsI	GAGTC	2 cut(s)	48, 715
Psp6I	CCWGG	1 cut(s)	223
PspEI	GGTNACC	1 cut(s)	150
PspGI	CCWGG	1 cut(s)	223
PspN4I	GGNNCC	3 cut(s)	14, 702, 1080
PspPI	GGNCC	3 cut(s)	13, 466, 1123
PstI	CTGCAG	2 cut(s)	679, 1034
PsuI	RGATCY	1 cut(s)	410
RsaI	GTAC	2 cut(s)	373, 1090
RsaNI	GTAC	2 cut(s)	372, 1089
RseI	CAYNNNNRTG	1 cut(s)	432
SalI	GTCGAC	1 cut(s)	613
SapI	GCTCTTC	1 cut(s)	196
SaqAI	TTAA	3 cut(s)	942, 954, 1152
SatI	GCNGC	5 cut(s)	675, 765, 831, 911, 1033
Sau3AI	GATC	9 cut(s)	59, 243, 258, 385, 410, 596, 946, 1018, 1206
Sau96I	GGNCC	3 cut(s)	13, 466, 1123
SchI	GAGTC	2 cut(s)	49, 716
ScrFI	CCNGG	2 cut(s)	184, 225
SduI	GDGCHC	1 cut(s)	691
SfcI	CTRYAG	3 cut(s)	675, 1014, 1030
SinI	GGWCC	2 cut(s)	13, 1123
SmiMI	CAYNNNNRTG	1 cut(s)	432
SphI	GCATGC	2 cut(s)	146, 508
Sse9I	AATT	4 cut(s)	459, 1164, 1211, 1252
SsiI	CCGC	3 cut(s)	394, 833, 910
StyD4I	CCNGG	2 cut(s)	182, 223
StyI	CCWWGG	1 cut(s)	1126
TaaI	ACNGT	3 cut(s)	17, 864, 1056
TaiI	ACGT	1 cut(s)	283
TaqI	TCGA	5 cut(s)	49, 70, 388, 614, 1097
TasI	AATT	4 cut(s)	459, 1164, 1211, 1252
TauI	GCSGC	1 cut(s)	913
TfiI	GAWTC	2 cut(s)	743, 846
Tru1I	TTAA	3 cut(s)	942, 954, 1152
Tru9I	TTAA	3 cut(s)	942, 954, 1152
TscAI	CASTG	4 cut(s)	12, 583, 867, 877
TseFI	GTSAC	1 cut(s)	150
TseI	GCWGC	4 cut(s)	674, 764, 830, 1032
Tsp45I	GTSAC	1 cut(s)	150
TspDTI	ATGAA	4 cut(s)	252, 795, 1170, 1200
TspRI	CASTG	4 cut(s)	12, 583, 867, 877
Van91I	CCANNNNNTGG	1 cut(s)	629
VpaK11BI	GGWCC	2 cut(s)	13, 1123
XapI	RAATTY	2 cut(s)	1211, 1252
XceI	RCATGY	4 cut(s)	146, 431, 508, 1046
XmiI	GTMKAC	1 cut(s)	614
XmnI	GAANNNNTTC	1 cut(s)	658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.