Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002746

Physical Location & Seq

Genomic Coordinates Forward (+)

8074956 .. 8075369

Gene Structure 414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0052500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGGGAGCAGGAGGGATCAATCAGTTTGTGCTCCTGCAGCGGCAGGGAAAAAAGAGCCACCCCCAAACATGGTGTGGTGCGATGACGATGACTTCGCCGAATCGTCAGTGCCACGCTTGCAAGGAAATAATGACAATCATCTAGTTACCTGGGTGGTTCCAAGCGGCCGAGACGGCACAAACGGCTTAACATTTGTCAGGGTTCAACATAATTCAACGTCCCAGTCGGCCATGGCGCCTGGGAACGGCCATCTTCATGATAATGGTAAGGGTTCACGTCATGTGCGGCCTGCGAAGGAAGACAAACAAGGCGCAAAATATTCATGCATCAGAAGCCGTGGCCGTAGAAGAAAAGATGTGGAAATTATGGATGCTGGAGCAAATGAAGTGGATAAATTTGATGTCGGCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008283 GO:0009507 GO:0009536 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0019222 GO:0031047 GO:0031050 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0040008 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048519 GO:0048638 GO:0050789 GO:0050793 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

137

Amino Acids

14.94

Weight (kDa)

7.78

Isoelectric Point (pI)

55.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24410 AT3G20550
fragaria_vesca	FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_6g43590
malus_domestica	MD03G1208700.v1.1 MD06G1125500.v1.1 MD11G1223400.v1.1
prunus_persica	Prupe.4G208000_v2.0.a1
pyrus_communis	pycom06g11580 pycom11g19700
rosa_chinensis	RchiOBHm_Chr2g0160171 RchiOBHm_Chr4g0405041 RchiOBHm_Chr5g0037921
rosa_laevigata	RLG00000008882 RLG00000021201 RLG00000033823
rosa_multiflora	Rmu_sc0001744.1_g000004 Rmu_ssc0000241.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042940 Rroxscaffold_5G00349230
rosa_rugosa	Rorug04G0052500 Rorug05G0169400 Rorug05G0169500 Rorug05G0169600
rosa_samantha	Rh2BG560700 Rh4AG127600 Rh4BG121300 Rh4CG135400 Rh4DG121700 Rh5AG257700 Rh5BG260500 Rh5CG293100
rosa_wichuraiana	Rw2G045270 Rw4G010330 Rw5G023890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	235
AciI	CCGC	3 cut(s)	41, 165, 286
AclWI	GGATC	1 cut(s)	24
AcoI	YGGCCR	4 cut(s)	166, 228, 247, 340
AcsI	RAATTY	1 cut(s)	395
AcyI	GRCGYC	1 cut(s)	236
AfiI	CCNNNNNNNGG	2 cut(s)	70, 245
AgsI	TTSAA	2 cut(s)	206, 216
AjiI	CACGTC	1 cut(s)	278
AjnI	CCWGG	2 cut(s)	149, 238
Alw21I	GWGCWC	1 cut(s)	34
Alw26I	GTCTC	1 cut(s)	165
AlwI	GGATC	1 cut(s)	24
AoxI	GGCC	5 cut(s)	166, 228, 247, 287, 340
ApeKI	GCWGC	1 cut(s)	38
ApoI	RAATTY	1 cut(s)	395
ArsI	GACNNNNNNTTYG	2 cut(s)	77, 109
AspLEI	GCGC	2 cut(s)	238, 314
BanI	GGYRCC	1 cut(s)	235
BbsI	GAAGAC	1 cut(s)	306
Bbv12I	GWGCWC	1 cut(s)	34
BbvI	GCAGC	1 cut(s)	50
BccI	CCATC	1 cut(s)	258
BceAI	ACGGC	5 cut(s)	190, 199, 262, 321, 327
BciT130I	CCWGG	2 cut(s)	151, 240
BcoDI	GTCTC	1 cut(s)	165
BfaI	CTAG	1 cut(s)	143
BfmI	CTRYAG	1 cut(s)	36
BfoI	RGCGCY	1 cut(s)	239
BglI	GCCNNNNNGGC	1 cut(s)	174
BisI	GCNGC	4 cut(s)	39, 42, 166, 287
BlsI	GCNGC	4 cut(s)	40, 43, 167, 288
Bme1390I	CCNGG	2 cut(s)	151, 240
BmgBI	CACGTC	1 cut(s)	278
BmiI	GGNNCC	2 cut(s)	159, 237
BmrFI	CCNGG	2 cut(s)	151, 240
BmrI	ACTGGG	1 cut(s)	217
BmsI	GCATC	2 cut(s)	336, 361
BmuI	ACTGGG	1 cut(s)	217
BpiI	GAAGAC	1 cut(s)	306
BpmI	CTGGAG	1 cut(s)	396
BsaHI	GRCGYC	1 cut(s)	236
BsaJI	CCNNGG	4 cut(s)	150, 231, 239, 337
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 245
Bse1I	ACTGG	1 cut(s)	223
BseBI	CCWGG	2 cut(s)	151, 240
BseDI	CCNNGG	4 cut(s)	150, 231, 239, 337
BseGI	GGATG	1 cut(s)	376
BseLI	CCNNNNNNNGG	2 cut(s)	70, 245
BseNI	ACTGG	1 cut(s)	223
BseX3I	CGGCCG	1 cut(s)	166
BseXI	GCAGC	1 cut(s)	50
Bsh1285I	CGRYCG	1 cut(s)	169
BshFI	GGCC	5 cut(s)	168, 230, 249, 289, 342
BshNI	GGYRCC	1 cut(s)	235
BsiEI	CGRYCG	1 cut(s)	169
BsiHKAI	GWGCWC	1 cut(s)	34
BslFI	GGGAC	1 cut(s)	205
BslI	CCNNNNNNNGG	2 cut(s)	70, 245
BsmAI	GTCTC	1 cut(s)	165
BsmBI	CGTCTC	1 cut(s)	165
BsmFI	GGGAC	1 cut(s)	205
BsnI	GGCC	5 cut(s)	168, 230, 249, 289, 342
Bsp1286I	GDGCHC	1 cut(s)	34
Bsp143I	GATC	1 cut(s)	16
Bsp19I	CCATGG	1 cut(s)	231
BspACI	CCGC	3 cut(s)	41, 165, 286
BspANI	GGCC	5 cut(s)	168, 230, 249, 289, 342
BspHI	TCATGA	1 cut(s)	256
BspLI	GGNNCC	2 cut(s)	159, 237
BspMAI	CTGCAG	1 cut(s)	40
BspPI	GGATC	1 cut(s)	24
BspT107I	GGYRCC	1 cut(s)	235
BsrI	ACTGG	1 cut(s)	223
BssECI	CCNNGG	4 cut(s)	150, 231, 239, 337
BssMI	GATC	1 cut(s)	16
BssNI	GRCGYC	1 cut(s)	236
BssT1I	CCWWGG	1 cut(s)	231
Bst2UI	CCWGG	2 cut(s)	151, 240
BstACI	GRCGYC	1 cut(s)	236
BstC8I	GCNNGC	2 cut(s)	119, 291
BstDSI	CCRYGG	2 cut(s)	231, 337
BstF5I	GGATG	1 cut(s)	376
BstH2I	RGCGCY	1 cut(s)	239
BstHHI	GCGC	2 cut(s)	238, 314
BstKTI	GATC	1 cut(s)	19
BstMAI	GTCTC	1 cut(s)	165
BstMBI	GATC	1 cut(s)	16
BstMCI	CGRYCG	1 cut(s)	169
BstMWI	GCNNNNNNNGC	5 cut(s)	38, 118, 174, 183, 333
BstNI	CCWGG	2 cut(s)	151, 240
BstSCI	CCNGG	2 cut(s)	149, 238
BstSFI	CTRYAG	1 cut(s)	36
BstV1I	GCAGC	1 cut(s)	50
BstV2I	GAAGAC	1 cut(s)	306
BstZI	CGGCCG	1 cut(s)	166
BsuRI	GGCC	5 cut(s)	168, 230, 249, 289, 342
BtgI	CCRYGG	2 cut(s)	231, 337
BtgZI	GCGATG	1 cut(s)	96
BtrI	CACGTC	1 cut(s)	278
BtsCI	GGATG	1 cut(s)	376
BtsIMutI	CAGTG	1 cut(s)	114
Cac8I	GCNNGC	2 cut(s)	119, 291
CciI	TCATGA	1 cut(s)	256
CfoI	GCGC	2 cut(s)	238, 314
CspCI	CAANNNNNGTGG	2 cut(s)	369, 404
CviAII	CATG	5 cut(s)	70, 232, 257, 281, 324
CviJI	RGCY	8 cut(s)	58, 168, 186, 230, 249, 289, 336, 342
CviKI_1	RGCY	8 cut(s)	58, 168, 186, 230, 249, 289, 336, 342
DinI	GGCGCC	1 cut(s)	237
DpnI	GATC	1 cut(s)	18
DpnII	GATC	1 cut(s)	16
EaeI	YGGCCR	4 cut(s)	166, 228, 247, 340
EagI	CGGCCG	1 cut(s)	166
EclXI	CGGCCG	1 cut(s)	166
Eco130I	CCWWGG	1 cut(s)	231
Eco52I	CGGCCG	1 cut(s)	166
EcoRII	CCWGG	2 cut(s)	149, 238
EcoT14I	CCWWGG	1 cut(s)	231
EcoT22I	ATGCAT	1 cut(s)	329
EgeI	GGCGCC	1 cut(s)	237
EheI	GGCGCC	1 cut(s)	237
ErhI	CCWWGG	1 cut(s)	231
Esp3I	CGTCTC	1 cut(s)	165
FaeI	CATG	5 cut(s)	73, 235, 260, 284, 327
FaiI	YATR	7 cut(s)	71, 210, 233, 258, 282, 325, 368
FaqI	GGGAC	1 cut(s)	205
FatI	CATG	5 cut(s)	69, 231, 256, 280, 323
Fnu4HI	GCNGC	4 cut(s)	39, 42, 166, 287
FokI	GGATG	1 cut(s)	383
Fsp4HI	GCNGC	4 cut(s)	39, 42, 166, 287
FspBI	CTAG	1 cut(s)	143
GlaI	GCGC	2 cut(s)	237, 313
GluI	GCNGC	4 cut(s)	39, 42, 166, 287
GsuI	CTGGAG	1 cut(s)	396
HaeII	RGCGCY	1 cut(s)	239
HaeIII	GGCC	5 cut(s)	168, 230, 249, 289, 342
HhaI	GCGC	2 cut(s)	238, 314
Hin1I	GRCGYC	1 cut(s)	236
Hin1II	CATG	5 cut(s)	73, 235, 260, 284, 327
Hin6I	GCGC	2 cut(s)	236, 312
HinP1I	GCGC	2 cut(s)	236, 312
HinfI	GANTC	1 cut(s)	101
Hpy166II	GTNNAC	1 cut(s)	275
Hpy188I	TCNGA	1 cut(s)	332
Hpy188III	TCNNGA	1 cut(s)	257
Hpy8I	GTNNAC	1 cut(s)	275
HpyAV	CCTTC	1 cut(s)	289
HpyCH4IV	ACGT	2 cut(s)	218, 277
HpyCH4V	TGCA	3 cut(s)	38, 121, 327
HpyF10VI	GCNNNNNNNGC	5 cut(s)	38, 118, 174, 183, 333
HpySE526I	ACGT	2 cut(s)	218, 277
Hsp92I	GRCGYC	1 cut(s)	236
Hsp92II	CATG	5 cut(s)	73, 235, 260, 284, 327
HspAI	GCGC	2 cut(s)	236, 312
KasI	GGCGCC	1 cut(s)	235
Kzo9I	GATC	1 cut(s)	16
LmnI	GCTCC	3 cut(s)	6, 37, 377
Lsp1109I	GCAGC	1 cut(s)	50
LweI	GCATC	2 cut(s)	336, 361
MaeI	CTAG	1 cut(s)	143
MaeII	ACGT	2 cut(s)	218, 277
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	1 cut(s)	18
MboI	GATC	1 cut(s)	16
MboII	GAAGA	3 cut(s)	245, 311, 360
MhlI	GDGCHC	1 cut(s)	34
MluCI	AATT	3 cut(s)	211, 363, 395
Mly113I	GGCGCC	1 cut(s)	236
MnlI	CCTC	1 cut(s)	6
Mph1103I	ATGCAT	1 cut(s)	329
MseI	TTAA	1 cut(s)	188
MslI	CAYNNNNRTG	2 cut(s)	255, 261
MspA1I	CMGCKG	1 cut(s)	41
MspR9I	CCNGG	2 cut(s)	151, 240
MvaI	CCWGG	2 cut(s)	151, 240
MwoI	GCNNNNNNNGC	5 cut(s)	38, 118, 174, 183, 333
NarI	GGCGCC	1 cut(s)	236
NcoI	CCATGG	1 cut(s)	231
NdeII	GATC	1 cut(s)	16
NlaIII	CATG	5 cut(s)	73, 235, 260, 284, 327
NlaIV	GGNNCC	2 cut(s)	159, 237
NmeAIII	GCCGAG	1 cut(s)	194
NsiI	ATGCAT	1 cut(s)	329
PagI	TCATGA	1 cut(s)	256
PfeI	GAWTC	1 cut(s)	101
PkrI	GCNGC	4 cut(s)	40, 43, 167, 288
PluTI	GGCGCC	1 cut(s)	239
Psp6I	CCWGG	2 cut(s)	149, 238
PspGI	CCWGG	2 cut(s)	149, 238
PspN4I	GGNNCC	2 cut(s)	159, 237
PstI	CTGCAG	1 cut(s)	40
RseI	CAYNNNNRTG	2 cut(s)	255, 261
SaqAI	TTAA	1 cut(s)	188
SatI	GCNGC	4 cut(s)	39, 42, 166, 287
Sau3AI	GATC	1 cut(s)	16
ScrFI	CCNGG	2 cut(s)	151, 240
SduI	GDGCHC	1 cut(s)	34
SetI	ASST	3 cut(s)	152, 221, 280
SfaNI	GCATC	2 cut(s)	336, 361
SfcI	CTRYAG	1 cut(s)	36
SfoI	GGCGCC	1 cut(s)	237
SmiMI	CAYNNNNRTG	2 cut(s)	255, 261
Sse9I	AATT	3 cut(s)	211, 363, 395
SsiI	CCGC	3 cut(s)	41, 165, 286
SspDI	GGCGCC	1 cut(s)	235
SspI	AATATT	1 cut(s)	320
SspMI	CTAG	1 cut(s)	143
StyD4I	CCNGG	2 cut(s)	149, 238
StyI	CCWWGG	1 cut(s)	231
TaiI	ACGT	2 cut(s)	221, 280
TasI	AATT	3 cut(s)	211, 363, 395
TauI	GCSGC	3 cut(s)	44, 168, 289
TfiI	GAWTC	1 cut(s)	101
Tru1I	TTAA	1 cut(s)	188
Tru9I	TTAA	1 cut(s)	188
TscAI	CASTG	1 cut(s)	114
TseI	GCWGC	1 cut(s)	38
TspDTI	ATGAA	3 cut(s)	245, 312, 399
TspRI	CASTG	1 cut(s)	114
XapI	RAATTY	1 cut(s)	395
XcmI	CCANNNNNNNNNTGG	1 cut(s)	72
XspI	CTAG	1 cut(s)	143
Zsp2I	ATGCAT	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.