Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0002746

Physical Location & Seq

Genomic Coordinates Reverse (-)

26736660 .. 26737132

Gene Structure 473 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1125500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGTCTTCATCGGACTCTCAAGCTCCAAACTTTAACCTGTCTAGAAGCCTTGCTGTAACCGATAGATACCAGAGCATAACACTACTATACACTGAGCCTGCAGATTCACACAAACCTGATGTAAGAACCCTTTTACGAATTGCATCATCAAAGATTCATGTTTTCGGGAGGGAAACGAGAGTGGCAGACATTCCTACATTCCATCCGTCTTGCAGTAAACAGCATGCTATTGTGCAATTCCGGCGAGTAGAAGAAAGTCAAGTAAGGCCTTACTTAATTGACCTTGGAAGCACGAACAGAACATATATTAATGGTAGTGCAATCGAACCTCAAATGTATTATGAACTTGTTGAGAAGGACACAATTAGGTTTGGTAATAGTAGCCGGGAATACGTGCTTCTTCATGAAAACTCTGCTGCTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008283 GO:0009507 GO:0009536 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0019222 GO:0031047 GO:0031050 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0040008 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048519 GO:0048638 GO:0050789 GO:0050793 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

142

Amino Acids

16.05

Weight (kDa)

6.51

Isoelectric Point (pI)

52.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FHA	PF00498	54 - 125	2.7e-16	FHA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24410 AT3G20550
fragaria_vesca	FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_6g43590
malus_domestica	MD03G1208700.v1.1 MD06G1125500.v1.1 MD11G1223400.v1.1
prunus_persica	Prupe.4G208000_v2.0.a1
pyrus_communis	pycom06g11580 pycom11g19700
rosa_chinensis	RchiOBHm_Chr2g0160171 RchiOBHm_Chr4g0405041 RchiOBHm_Chr5g0037921
rosa_laevigata	RLG00000008882 RLG00000021201 RLG00000033823
rosa_multiflora	Rmu_sc0001744.1_g000004 Rmu_ssc0000241.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042940 Rroxscaffold_5G00349230
rosa_rugosa	Rorug04G0052500 Rorug05G0169400 Rorug05G0169500 Rorug05G0169600
rosa_samantha	Rh2BG560700 Rh4AG127600 Rh4BG121300 Rh4CG135400 Rh4DG121700 Rh5AG257700 Rh5BG260500 Rh5CG293100
rosa_wichuraiana	Rw2G045270 Rw4G010330 Rw5G023890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AluBI	AGCT	1 cut(s)	23
AluI	AGCT	1 cut(s)	23
AoxI	GGCC	1 cut(s)	266
ApeKI	GCWGC	1 cut(s)	416
AseI	ATTAAT	1 cut(s)	309
AsuC2I	CCSGG	1 cut(s)	386
BbvI	GCAGC	1 cut(s)	403
BccI	CCATC	1 cut(s)	210
BcnI	CCSGG	1 cut(s)	386
BfaI	CTAG	1 cut(s)	42
BfmI	CTRYAG	1 cut(s)	99
BisI	GCNGC	1 cut(s)	417
BlsI	GCNGC	1 cut(s)	418
Bme1390I	CCNGG	1 cut(s)	386
BmrFI	CCNGG	1 cut(s)	386
BmsI	GCATC	1 cut(s)	152
BpuMI	CCSGG	1 cut(s)	386
BsaAI	YACGTR	1 cut(s)	394
BsaJI	CCNNGG	1 cut(s)	283
BseDI	CCNNGG	1 cut(s)	283
BseGI	GGATG	1 cut(s)	202
BseMII	CTCAG	1 cut(s)	84
BseXI	GCAGC	1 cut(s)	403
BshFI	GGCC	1 cut(s)	268
BsiSI	CCGG	2 cut(s)	241, 385
BsnI	GGCC	1 cut(s)	268
BspANI	GGCC	1 cut(s)	268
BspCNI	CTCAG	1 cut(s)	85
BspHI	TCATGA	1 cut(s)	403
BspMAI	CTGCAG	1 cut(s)	103
BssECI	CCNNGG	1 cut(s)	283
BssT1I	CCWWGG	1 cut(s)	283
BstBAI	YACGTR	1 cut(s)	394
BstC8I	GCNNGC	2 cut(s)	99, 225
BstDEI	CTNAG	1 cut(s)	93
BstF5I	GGATG	1 cut(s)	202
BstMWI	GCNNNNNNNGC	1 cut(s)	241
BstNSI	RCATGY	1 cut(s)	227
BstSCI	CCNGG	1 cut(s)	384
BstSFI	CTRYAG	1 cut(s)	99
BstV1I	GCAGC	1 cut(s)	403
BsuRI	GGCC	1 cut(s)	268
BtsCI	GGATG	1 cut(s)	202
BtsIMutI	CAGTG	1 cut(s)	90
Cac8I	GCNNGC	2 cut(s)	99, 225
CciI	TCATGA	1 cut(s)	403
CviAII	CATG	3 cut(s)	158, 224, 404
CviJI	RGCY	5 cut(s)	23, 48, 97, 268, 384
CviKI_1	RGCY	5 cut(s)	23, 48, 97, 268, 384
DdeI	CTNAG	1 cut(s)	93
Eco130I	CCWWGG	1 cut(s)	283
Eco147I	AGGCCT	1 cut(s)	268
EcoT14I	CCWWGG	1 cut(s)	283
ErhI	CCWWGG	1 cut(s)	283
FaeI	CATG	3 cut(s)	161, 227, 407
FaiI	YATR	8 cut(s)	77, 88, 159, 225, 304, 306, 342, 405
FatI	CATG	3 cut(s)	157, 223, 403
Fnu4HI	GCNGC	1 cut(s)	417
FokI	GGATG	1 cut(s)	189
Fsp4HI	GCNGC	1 cut(s)	417
FspBI	CTAG	1 cut(s)	42
GluI	GCNGC	1 cut(s)	417
HaeIII	GGCC	1 cut(s)	268
HapII	CCGG	2 cut(s)	241, 385
Hin1II	CATG	3 cut(s)	161, 227, 407
HinfI	GANTC	3 cut(s)	14, 104, 154
HpaII	CCGG	2 cut(s)	241, 385
Hpy166II	GTNNAC	1 cut(s)	218
Hpy188I	TCNGA	1 cut(s)	13
Hpy188III	TCNNGA	3 cut(s)	42, 166, 404
Hpy8I	GTNNAC	1 cut(s)	218
HpyAV	CCTTC	1 cut(s)	349
HpyCH4IV	ACGT	1 cut(s)	393
HpyCH4V	TGCA	5 cut(s)	101, 143, 213, 235, 320
HpyF10VI	GCNNNNNNNGC	1 cut(s)	241
HpyF3I	CTNAG	1 cut(s)	93
HpySE526I	ACGT	1 cut(s)	393
Hsp92II	CATG	3 cut(s)	161, 227, 407
LmnI	GCTCC	1 cut(s)	28
LpnPI	CCDG	6 cut(s)	50, 83, 111, 129, 254, 398
Lsp1109I	GCAGC	1 cut(s)	403
LweI	GCATC	1 cut(s)	152
MaeI	CTAG	1 cut(s)	42
MaeII	ACGT	1 cut(s)	393
MaeIII	GTNAC	1 cut(s)	55
MboII	GAAGA	2 cut(s)	263, 392
MluCI	AATT	4 cut(s)	138, 236, 276, 363
MlyI	GAGTC	1 cut(s)	8
MnlI	CCTC	2 cut(s)	162, 339
MseI	TTAA	3 cut(s)	33, 275, 309
MspI	CCGG	2 cut(s)	241, 385
MspR9I	CCNGG	1 cut(s)	386
MwoI	GCNNNNNNNGC	1 cut(s)	241
NciI	CCSGG	1 cut(s)	386
NlaIII	CATG	3 cut(s)	161, 227, 407
NspI	RCATGY	1 cut(s)	227
PaeI	GCATGC	1 cut(s)	227
PagI	TCATGA	1 cut(s)	403
PceI	AGGCCT	1 cut(s)	268
PfeI	GAWTC	2 cut(s)	104, 154
PkrI	GCNGC	1 cut(s)	418
PleI	GAGTC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	8
Ppu21I	YACGTR	1 cut(s)	394
PshBI	ATTAAT	1 cut(s)	309
PstI	CTGCAG	1 cut(s)	103
SaqAI	TTAA	3 cut(s)	33, 275, 309
SatI	GCNGC	1 cut(s)	417
SchI	GAGTC	1 cut(s)	8
ScrFI	CCNGG	1 cut(s)	386
SetI	ASST	7 cut(s)	25, 39, 118, 285, 331, 371, 396
SfaNI	GCATC	1 cut(s)	152
SfcI	CTRYAG	1 cut(s)	99
SmlI	CTYRAG	1 cut(s)	18
SmoI	CTYRAG	1 cut(s)	18
SphI	GCATGC	1 cut(s)	227
Sse9I	AATT	4 cut(s)	138, 236, 276, 363
SseBI	AGGCCT	1 cut(s)	268
SspMI	CTAG	1 cut(s)	42
StuI	AGGCCT	1 cut(s)	268
StyD4I	CCNGG	1 cut(s)	384
StyI	CCWWGG	1 cut(s)	283
TaiI	ACGT	1 cut(s)	396
TaqI	TCGA	1 cut(s)	324
TasI	AATT	4 cut(s)	138, 236, 276, 363
TfiI	GAWTC	2 cut(s)	104, 154
Tru1I	TTAA	3 cut(s)	33, 275, 309
Tru9I	TTAA	3 cut(s)	33, 275, 309
TscAI	CASTG	1 cut(s)	97
TseI	GCWGC	1 cut(s)	416
TspDTI	ATGAA	4 cut(s)	146, 357, 392, 420
TspGWI	ACGGA	1 cut(s)	195
TspRI	CASTG	1 cut(s)	97
VspI	ATTAAT	1 cut(s)	309
XbaI	TCTAGA	1 cut(s)	41
XceI	RCATGY	1 cut(s)	227
XspI	CTAG	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.