Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0002746

Physical Location & Seq

Genomic Coordinates Reverse (-)

16845508 .. 16845980

Gene Structure 473 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g11580.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGTCTTCATCGGACTCTCAAGCTCCAAACTTTAACCTGTCTAGAAACCTTGCTGCAACCGATAGATTCCAGAGCATAACATTACTATACACTGAGCCTGCAGATTCACACAAACCTGATGTAAGGTGGAGGCTGTATGTTTTCAAGGATGGCAAATTGATTCCTCTTTTCGGGAGGGAAACGAGAGTGGCAGACATTCCTACATTCCATCCGTCGTACAGCAAACAGCATGCTATTGTGCAATTCCAGCGAGTAGAAGAAAATCAAGTAAGGCCTTACTTAATTGACCTTGGAAGCACGAACAGAACATTTATTAATGGTAGTGCAATTGAACCTCAAAGGTATTATGAACTTGTCGAGAAGGACACAAATAGGTTTGGTAATAGTAGCCGGGAGTACGTGCTTCTTCGTGAAAACTCTGCAGCTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008283 GO:0009507 GO:0009536 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0019222 GO:0031047 GO:0031050 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0040008 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048519 GO:0048638 GO:0050789 GO:0050793 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

144

Amino Acids

16.53

Weight (kDa)

6.84

Isoelectric Point (pI)

39.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24410 AT3G20550
fragaria_vesca	FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_6g43590
malus_domestica	MD03G1208700.v1.1 MD06G1125500.v1.1 MD11G1223400.v1.1
prunus_persica	Prupe.4G208000_v2.0.a1
pyrus_communis	pycom06g11580 pycom11g19700
rosa_chinensis	RchiOBHm_Chr2g0160171 RchiOBHm_Chr4g0405041 RchiOBHm_Chr5g0037921
rosa_laevigata	RLG00000008882 RLG00000021201 RLG00000033823
rosa_multiflora	Rmu_sc0001744.1_g000004 Rmu_ssc0000241.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042940 Rroxscaffold_5G00349230
rosa_rugosa	Rorug04G0052500 Rorug05G0169400 Rorug05G0169500 Rorug05G0169600
rosa_samantha	Rh2BG560700 Rh4AG127600 Rh4BG121300 Rh4CG135400 Rh4DG121700 Rh5AG257700 Rh5BG260500 Rh5CG293100
rosa_wichuraiana	Rw2G045270 Rw4G010330 Rw5G023890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	218, 398
AfiI	CCNNNNNNNGG	1 cut(s)	170
AgsI	TTSAA	2 cut(s)	145, 332
AluBI	AGCT	2 cut(s)	23, 425
AluI	AGCT	2 cut(s)	23, 425
AoxI	GGCC	1 cut(s)	272
ApeKI	GCWGC	2 cut(s)	53, 422
AseI	ATTAAT	1 cut(s)	315
AsuC2I	CCSGG	1 cut(s)	392
BbvI	GCAGC	1 cut(s)	40
BccI	CCATC	2 cut(s)	143, 216
BcnI	CCSGG	1 cut(s)	392
BfaI	CTAG	1 cut(s)	42
BfmI	CTRYAG	2 cut(s)	99, 420
BisI	GCNGC	2 cut(s)	54, 423
BlsI	GCNGC	2 cut(s)	55, 424
Bme1390I	CCNGG	1 cut(s)	392
BmrFI	CCNGG	1 cut(s)	392
BpuMI	CCSGG	1 cut(s)	392
BsaAI	YACGTR	1 cut(s)	400
BsaJI	CCNNGG	1 cut(s)	289
Bsc4I	CCNNNNNNNGG	1 cut(s)	170
BseDI	CCNNGG	1 cut(s)	289
BseGI	GGATG	2 cut(s)	154, 208
BseLI	CCNNNNNNNGG	1 cut(s)	170
BseMII	CTCAG	1 cut(s)	84
BseXI	GCAGC	1 cut(s)	40
BshFI	GGCC	1 cut(s)	274
BsiSI	CCGG	1 cut(s)	391
BslI	CCNNNNNNNGG	1 cut(s)	170
BsnI	GGCC	1 cut(s)	274
BspANI	GGCC	1 cut(s)	274
BspCNI	CTCAG	1 cut(s)	85
BspMAI	CTGCAG	2 cut(s)	103, 424
BssECI	CCNNGG	1 cut(s)	289
BssT1I	CCWWGG	1 cut(s)	289
BstBAI	YACGTR	1 cut(s)	400
BstC8I	GCNNGC	2 cut(s)	99, 231
BstDEI	CTNAG	1 cut(s)	93
BstF5I	GGATG	2 cut(s)	154, 208
BstMWI	GCNNNNNNNGC	1 cut(s)	247
BstNSI	RCATGY	1 cut(s)	233
BstSCI	CCNGG	1 cut(s)	390
BstSFI	CTRYAG	2 cut(s)	99, 420
BstV1I	GCAGC	1 cut(s)	40
BsuRI	GGCC	1 cut(s)	274
BtsCI	GGATG	2 cut(s)	154, 208
BtsIMutI	CAGTG	1 cut(s)	90
Cac8I	GCNNGC	2 cut(s)	99, 231
Csp6I	GTAC	2 cut(s)	217, 397
CviAII	CATG	1 cut(s)	230
CviJI	RGCY	6 cut(s)	23, 97, 133, 274, 390, 425
CviKI_1	RGCY	6 cut(s)	23, 97, 133, 274, 390, 425
CviQI	GTAC	2 cut(s)	217, 397
DdeI	CTNAG	1 cut(s)	93
Eco130I	CCWWGG	1 cut(s)	289
Eco147I	AGGCCT	1 cut(s)	274
EcoT14I	CCWWGG	1 cut(s)	289
ErhI	CCWWGG	1 cut(s)	289
FaeI	CATG	1 cut(s)	233
FaiI	YATR	5 cut(s)	77, 88, 138, 231, 348
FatI	CATG	1 cut(s)	229
Fnu4HI	GCNGC	2 cut(s)	54, 423
FokI	GGATG	2 cut(s)	161, 195
Fsp4HI	GCNGC	2 cut(s)	54, 423
FspBI	CTAG	1 cut(s)	42
GluI	GCNGC	2 cut(s)	54, 423
HaeIII	GGCC	1 cut(s)	274
HapII	CCGG	1 cut(s)	391
Hin1II	CATG	1 cut(s)	233
HinfI	GANTC	4 cut(s)	14, 66, 104, 160
HpaII	CCGG	1 cut(s)	391
Hpy188I	TCNGA	1 cut(s)	13
Hpy188III	TCNNGA	5 cut(s)	42, 70, 172, 358, 410
Hpy99I	CGWCG	1 cut(s)	217
HpyAV	CCTTC	1 cut(s)	355
HpyCH4IV	ACGT	1 cut(s)	399
HpyCH4V	TGCA	5 cut(s)	56, 101, 241, 326, 422
HpyF10VI	GCNNNNNNNGC	1 cut(s)	247
HpyF3I	CTNAG	1 cut(s)	93
HpySE526I	ACGT	1 cut(s)	399
Hsp92II	CATG	1 cut(s)	233
LmnI	GCTCC	1 cut(s)	28
LpnPI	CCDG	6 cut(s)	50, 83, 111, 129, 260, 404
Lsp1109I	GCAGC	1 cut(s)	40
MaeI	CTAG	1 cut(s)	42
MaeII	ACGT	1 cut(s)	399
MboII	GAAGA	2 cut(s)	269, 398
MfeI	CAATTG	1 cut(s)	327
MluCI	AATT	4 cut(s)	155, 242, 282, 327
MlyI	GAGTC	1 cut(s)	8
MnlI	CCTC	4 cut(s)	123, 168, 174, 345
MseI	TTAA	3 cut(s)	33, 281, 315
MspA1I	CMGCKG	1 cut(s)	425
MspI	CCGG	1 cut(s)	391
MspR9I	CCNGG	1 cut(s)	392
MunI	CAATTG	1 cut(s)	327
MwoI	GCNNNNNNNGC	1 cut(s)	247
NciI	CCSGG	1 cut(s)	392
NlaIII	CATG	1 cut(s)	233
NspI	RCATGY	1 cut(s)	233
PaeI	GCATGC	1 cut(s)	233
PceI	AGGCCT	1 cut(s)	274
PfeI	GAWTC	3 cut(s)	66, 104, 160
PkrI	GCNGC	2 cut(s)	55, 424
PleI	GAGTC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	8
Ppu21I	YACGTR	1 cut(s)	400
PshBI	ATTAAT	1 cut(s)	315
PstI	CTGCAG	2 cut(s)	103, 424
PvuII	CAGCTG	1 cut(s)	425
RsaI	GTAC	2 cut(s)	218, 398
RsaNI	GTAC	2 cut(s)	217, 397
SaqAI	TTAA	3 cut(s)	33, 281, 315
SatI	GCNGC	2 cut(s)	54, 423
SchI	GAGTC	1 cut(s)	8
ScrFI	CCNGG	1 cut(s)	392
SfcI	CTRYAG	2 cut(s)	99, 420
SmlI	CTYRAG	1 cut(s)	18
SmoI	CTYRAG	1 cut(s)	18
SphI	GCATGC	1 cut(s)	233
Sse9I	AATT	4 cut(s)	155, 242, 282, 327
SseBI	AGGCCT	1 cut(s)	274
SspMI	CTAG	1 cut(s)	42
StuI	AGGCCT	1 cut(s)	274
StyD4I	CCNGG	1 cut(s)	390
StyI	CCWWGG	1 cut(s)	289
TaiI	ACGT	1 cut(s)	402
TaqI	TCGA	1 cut(s)	357
TasI	AATT	4 cut(s)	155, 242, 282, 327
TfiI	GAWTC	3 cut(s)	66, 104, 160
Tru1I	TTAA	3 cut(s)	33, 281, 315
Tru9I	TTAA	3 cut(s)	33, 281, 315
TscAI	CASTG	1 cut(s)	97
TseI	GCWGC	2 cut(s)	53, 422
TspDTI	ATGAA	1 cut(s)	363
TspGWI	ACGGA	1 cut(s)	201
TspRI	CASTG	1 cut(s)	97
VspI	ATTAAT	1 cut(s)	315
XbaI	TCTAGA	1 cut(s)	41
XceI	RCATGY	1 cut(s)	233
XspI	CTAG	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.