RLG00000033823

FHA domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
32689162 .. 32695843
6682 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033823

Sequence Viewer

Length: 1353 bp
ATGTGCATGAACATATCCTACCTTGGGCCGACAGCGAACGAACTAATTTCCAGTCAGTCAGGAGAAGTCCACTTTTGTGCATTTGCAAATTTCCTGATGGGGCGTAATCTGAGAAATGATTCTGAATCTCCAGTGAGGGACCGTGGGTCTCCTCGTAGGAGGAAGAGTCAATCTCGAACAGAGAGATCACCTACTCGACATAGAAAGTCCAACAGAGGAAGTTCTCCACCAAGAGAGAAACATTCAAGTCGCCTCAAGTCTCCCAAGCATGCAAGGTCACCCTCTCCTCCTTCTCGCTCTCCTTCTCCCCGGACAAAACGGCTAAGAAGAGCTGAAGCTGGAAGAGTGCCTGGGAGAGAACATGAAAGGACCAATGATAGGGGGATCAGTAGGGATTTACAGGAACGTGGTTCAGAGAGAGATGTTGGGAGTGATAGAAAGGAGAGATTGTCGGGAAGGAATGATACCGATGATAAATCTTCAAGAACAAGGCGTGGTACTTCTCCATCAGATCGACAACGCACGAGTAGGCATAGATCTCACTCACCTCTACATGCTGGTGATACAAGAGATGGGGAGAAAGTAATTGAGGGCCGTGGAAGAAATCGTAGCAGAGGGAGTGAGAAAAGCATGCACAGGGAAAAAAGTTCAGATGGGGAAAATGAGACTGAAAGAATGGAGAGAAGGACCGCAAAAGACAGCACTGGTCATAAGTCTTCAACATCAAGACATGGGCAGTCGACTTCTCCATTGAATGGACACCACAAGAACAGACACCGAACTCATTCACCTCAACAAGCTGCAGATACCAGAGCCCGTGATGAGACACCAGAGTATACATGTTCTTTTGGGTCCAAGAGTGTTGAGGACAGCTGTTATCCTGGGGCATGCCCTAGTCATAATGATAAACTAGTGACAACCAAATTGCTTGAGGAAACTAGTTGTTATTTTCCAGGTATAACACTGTTATACACTGAGCCAGCAGAAGGACGGCCACCTCATGTAAAATGGCGGCTTTATGTTTTCAAGGGTGATCCCATTAAGATACATCGGCAAAGCTGTTACCTTTTTGGGAGGGAAAGAAGGGTGGCAGACATCCCTACAGATCACCCATCCTGCAGCAAACAACATGCTGTTATACAGTTCCGGCAAGTAGAGAAGGAGGAACCTGATGGTACATTGTCAAAGGAAGTAAAGCCTTACATAATGGACCTTGGAAGCACAAATAAGACCTTTGTTAATGAAAGTGCAATTGAACCTCAGCGATATTATGAACTGATGGAAAGAGACACGATCAAATTTGGTAATAGTAGCCGAGAGTATGTGCTACTGCACGAGAATTCTATGGATTGA

Protein Analysis

451

Amino Acids

51.38

Weight (kDa)

9.9

Isoelectric Point (pI)

69.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FHA PF00498 355 - 435 1.1e-15 FHA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 755
AccI GTMKAC 2 cut(s) 740, 836
AciI CCGC 2 cut(s) 690, 1012
AclWI GGATC 2 cut(s) 392, 1028
AcoI YGGCCR 1 cut(s) 992
AcsI RAATTY 3 cut(s) 88, 1298, 1339
AcuI CTGAAG 1 cut(s) 354
AfaI GTAC 2 cut(s) 499, 1177
AfiI CCNNNNNNNGG 4 cut(s) 24, 378, 755, 986
AflIII ACRYGT 1 cut(s) 839
AgsI TTSAA 6 cut(s) 246, 483, 720, 754, 1027, 1256
AhdI GACNNNNNGTC 1 cut(s) 145
AhlI ACTAGT 2 cut(s) 910, 938
AjnI CCWGG 3 cut(s) 349, 880, 952
AleI CACNNNNGTG 1 cut(s) 75
AluBI AGCT 5 cut(s) 332, 338, 800, 873, 1059
AluI AGCT 5 cut(s) 332, 338, 800, 873, 1059
Alw26I GTCTC 5 cut(s) 153, 264, 659, 818, 1281
AlwI GGATC 2 cut(s) 392, 1028
AoxI GGCC 3 cut(s) 26, 592, 992
ApeKI GCWGC 2 cut(s) 800, 1119
ApoI RAATTY 3 cut(s) 88, 1298, 1339
Asp700I GAANNNNTTC 2 cut(s) 118, 784
AspS9I GGNCC 7 cut(s) 26, 139, 369, 592, 687, 852, 1210
AsuC2I CCSGG 1 cut(s) 310
AsuHPI GGTGA 7 cut(s) 180, 270, 537, 572, 780, 1043, 1100
AvaII GGWCC 5 cut(s) 139, 369, 687, 852, 1210
BanII GRGCYC 1 cut(s) 817
BarI GAAGNNNNNNTAC 2 cut(s) 448, 480
BauI CACGAG 2 cut(s) 523, 1334
BbsI GAAGAC 1 cut(s) 708
BbvCI CCTCAGC 1 cut(s) 1260
BbvI GCAGC 2 cut(s) 787, 1131
BccI CCATC 7 cut(s) 91, 514, 566, 647, 1120, 1166, 1273
BceAI ACGGC 3 cut(s) 335, 579, 1007
BciT130I CCWGG 3 cut(s) 351, 882, 954
BcnI CCSGG 1 cut(s) 310
BcoDI GTCTC 5 cut(s) 153, 264, 659, 818, 1281
BcuI ACTAGT 2 cut(s) 910, 938
BfaI CTAG 3 cut(s) 894, 911, 939
BfmI CTRYAG 3 cut(s) 801, 1101, 1117
BglII AGATCT 1 cut(s) 536
BisI GCNGC 3 cut(s) 801, 1013, 1120
BlsI GCNGC 3 cut(s) 802, 1014, 1121
Bme1390I CCNGG 4 cut(s) 310, 351, 882, 954
Bme18I GGWCC 5 cut(s) 139, 369, 687, 852, 1210
BmeRI GACNNNNNGTC 1 cut(s) 145
BmgT120I GGNCC 7 cut(s) 26, 139, 369, 592, 687, 852, 1210
BmiI GGNNCC 3 cut(s) 140, 853, 1167
BmrFI CCNGG 4 cut(s) 310, 351, 882, 954
BpiI GAAGAC 1 cut(s) 708
BplI GAGNNNNNCTC 2 cut(s) 157, 189
BpmI CTGGAG 1 cut(s) 114
Bpu10I CCTNAGC 1 cut(s) 1260
BpuEI CTTGAG 2 cut(s) 239, 950
BpuMI CCSGG 1 cut(s) 310
BsaI GGTCTC 1 cut(s) 153
BsaJI CCNNGG 7 cut(s) 22, 142, 308, 350, 595, 881, 1213
BsaXI ACNNNNNCTCC 4 cut(s) 151, 181, 434, 464
Bsc4I CCNNNNNNNGG 4 cut(s) 24, 378, 755, 986
Bse1I ACTGG 3 cut(s) 51, 131, 709
BseBI CCWGG 3 cut(s) 351, 882, 954
BseDI CCNNGG 7 cut(s) 22, 142, 308, 350, 595, 881, 1213
BseGI GGATG 2 cut(s) 1095, 1112
BseLI CCNNNNNNNGG 4 cut(s) 24, 378, 755, 986
BseMII CTCAG 3 cut(s) 101, 966, 1274
BseNI ACTGG 3 cut(s) 51, 131, 709
BseRI GAGGAG 2 cut(s) 141, 276
BseXI GCAGC 2 cut(s) 787, 1131
BsgI GTGCAG 1 cut(s) 1316
BshFI GGCC 3 cut(s) 28, 594, 994
BsiSI CCGG 2 cut(s) 310, 1147
BslFI GGGAC 1 cut(s) 152
BslI CCNNNNNNNGG 4 cut(s) 24, 378, 755, 986
BsmAI GTCTC 5 cut(s) 153, 264, 659, 818, 1281
BsmFI GGGAC 1 cut(s) 152
BsnI GGCC 3 cut(s) 28, 594, 994
Bso31I GGTCTC 1 cut(s) 153
Bsp1286I GDGCHC 1 cut(s) 817
Bsp143I GATC 7 cut(s) 185, 384, 511, 536, 1033, 1105, 1293
BspACI CCGC 2 cut(s) 690, 1012
BspANI GGCC 3 cut(s) 28, 594, 994
BspCNI CTCAG 3 cut(s) 102, 967, 1273
BspLI GGNNCC 3 cut(s) 140, 853, 1167
BspMAI CTGCAG 2 cut(s) 805, 1121
BspPI GGATC 2 cut(s) 392, 1028
BspQI GCTCTTC 1 cut(s) 322
BspTNI GGTCTC 1 cut(s) 153
BsrI ACTGG 3 cut(s) 51, 131, 709
BssECI CCNNGG 7 cut(s) 22, 142, 308, 350, 595, 881, 1213
BssMI GATC 7 cut(s) 185, 384, 511, 536, 1033, 1105, 1293
BssNAI GTATAC 1 cut(s) 837
BssSI CACGAG 2 cut(s) 523, 1334
BssT1I CCWWGG 2 cut(s) 22, 1213
Bst1107I GTATAC 1 cut(s) 837
Bst2BI CACGAG 2 cut(s) 523, 1334
Bst2UI CCWGG 3 cut(s) 351, 882, 954
Bst4CI ACNGT 3 cut(s) 143, 966, 1143
Bst6I CTCTTC 3 cut(s) 158, 322, 337
BstC8I GCNNGC 4 cut(s) 270, 632, 889, 981
BstDEI CTNAG 4 cut(s) 110, 323, 975, 1260
BstDSI CCRYGG 2 cut(s) 142, 595
BstEII GGTNACC 1 cut(s) 276
BstF5I GGATG 2 cut(s) 1095, 1112
BstKTI GATC 7 cut(s) 188, 387, 514, 539, 1036, 1108, 1296
BstMAI GTCTC 5 cut(s) 153, 264, 659, 818, 1281
BstMBI GATC 7 cut(s) 185, 384, 511, 536, 1033, 1105, 1293
BstNI CCWGG 3 cut(s) 351, 882, 954
BstNSI RCATGY 6 cut(s) 272, 557, 634, 843, 891, 1133
BstPI GGTNACC 1 cut(s) 276
BstSCI CCNGG 4 cut(s) 308, 349, 880, 952
BstSFI CTRYAG 3 cut(s) 801, 1101, 1117
BstV1I GCAGC 2 cut(s) 787, 1131
BstV2I GAAGAC 1 cut(s) 708
BstX2I RGATCY 1 cut(s) 536
BstYI RGATCY 1 cut(s) 536
BstZ17I GTATAC 1 cut(s) 837
BsuRI GGCC 3 cut(s) 28, 594, 994
BtgI CCRYGG 2 cut(s) 142, 595
BtsCI GGATG 2 cut(s) 1095, 1112
BtsIMutI CAGTG 4 cut(s) 138, 702, 962, 972
Cac8I GCNNGC 4 cut(s) 270, 632, 889, 981
Cfr13I GGNCC 7 cut(s) 26, 139, 369, 592, 687, 852, 1210
Csp6I GTAC 2 cut(s) 498, 1176
CviQI GTAC 2 cut(s) 498, 1176
DdeI CTNAG 4 cut(s) 110, 323, 975, 1260
DpnI GATC 7 cut(s) 187, 386, 513, 538, 1035, 1107, 1295
DpnII GATC 7 cut(s) 185, 384, 511, 536, 1033, 1105, 1293
DriI GACNNNNNGTC 1 cut(s) 145
EaeI YGGCCR 1 cut(s) 992
Eam1104I CTCTTC 3 cut(s) 158, 322, 337
Eam1105I GACNNNNNGTC 1 cut(s) 145
EarI CTCTTC 3 cut(s) 158, 322, 337
Eco130I CCWWGG 2 cut(s) 22, 1213
Eco24I GRGCYC 1 cut(s) 817
Eco31I GGTCTC 1 cut(s) 153
Eco47I GGWCC 5 cut(s) 139, 369, 687, 852, 1210
Eco57I CTGAAG 1 cut(s) 354
Eco91I GGTNACC 1 cut(s) 276
EcoO65I GGTNACC 1 cut(s) 276
EcoRI GAATTC 1 cut(s) 1339
EcoRII CCWGG 3 cut(s) 349, 880, 952
EcoT14I CCWWGG 2 cut(s) 22, 1213
EcoT38I GRGCYC 1 cut(s) 817
ErhI CCWWGG 2 cut(s) 22, 1213
FaqI GGGAC 1 cut(s) 152
FblI GTMKAC 2 cut(s) 740, 836
Fnu4HI GCNGC 3 cut(s) 801, 1013, 1120
FokI GGATG 2 cut(s) 1082, 1099
FriOI GRGCYC 1 cut(s) 817
Fsp4HI GCNGC 3 cut(s) 801, 1013, 1120
FspBI CTAG 3 cut(s) 894, 911, 939
GluI GCNGC 3 cut(s) 801, 1013, 1120
GsuI CTGGAG 1 cut(s) 114
HaeIII GGCC 3 cut(s) 28, 594, 994
HapII CCGG 2 cut(s) 310, 1147
HincII GTYRAC 1 cut(s) 741
HindII GTYRAC 1 cut(s) 741
HinfI GANTC 3 cut(s) 119, 125, 166
HpaII CCGG 2 cut(s) 310, 1147
HphI GGTGA 7 cut(s) 180, 270, 537, 572, 780, 1043, 1100
Hpy166II GTNNAC 3 cut(s) 70, 741, 837
Hpy188I TCNGA 5 cut(s) 111, 124, 415, 511, 652
Hpy188III TCNNGA 6 cut(s) 60, 94, 174, 453, 483, 726
Hpy8I GTNNAC 3 cut(s) 70, 741, 837
HpyAV CCTTC 7 cut(s) 300, 312, 450, 678, 980, 1077, 1153
HpyCH4III ACNGT 3 cut(s) 143, 966, 1143
HpyCH4IV ACGT 1 cut(s) 406
HpyCH4V TGCA 9 cut(s) 6, 80, 86, 272, 634, 803, 1119, 1250, 1333
HpyF3I CTNAG 4 cut(s) 110, 323, 975, 1260
HpySE526I ACGT 1 cut(s) 406
Kzo9I GATC 7 cut(s) 185, 384, 511, 536, 1033, 1105, 1293
LguI GCTCTTC 1 cut(s) 322
Lsp1109I GCAGC 2 cut(s) 787, 1131
MaeI CTAG 3 cut(s) 894, 911, 939
MaeII ACGT 1 cut(s) 406
MaeIII GTNAC 3 cut(s) 276, 913, 1061
MalI GATC 7 cut(s) 187, 386, 513, 538, 1035, 1107, 1295
MboI GATC 7 cut(s) 185, 384, 511, 536, 1033, 1105, 1293
MboII GAAGA 6 cut(s) 175, 339, 354, 471, 612, 708
MfeI CAATTG 1 cut(s) 1251
MflI RGATCY 1 cut(s) 536
MhlI GDGCHC 1 cut(s) 817
MluCI AATT 7 cut(s) 45, 88, 585, 923, 1251, 1298, 1339
MlyI GAGTC 1 cut(s) 175
MmeI TCCRAC 1 cut(s) 234
MroXI GAANNNNTTC 2 cut(s) 118, 784
MseI TTAA 2 cut(s) 1041, 1239
MslI CAYNNNNRTG 2 cut(s) 75, 558
MspA1I CMGCKG 1 cut(s) 873
MspI CCGG 2 cut(s) 310, 1147
MspR9I CCNGG 4 cut(s) 310, 351, 882, 954
MunI CAATTG 1 cut(s) 1251
MvaI CCWGG 3 cut(s) 351, 882, 954
NciI CCSGG 1 cut(s) 310
NdeII GATC 7 cut(s) 185, 384, 511, 536, 1033, 1105, 1293
NlaIV GGNNCC 3 cut(s) 140, 853, 1167
NmeAIII GCCGAG 1 cut(s) 1340
NmuCI GTSAC 2 cut(s) 276, 913
NspI RCATGY 6 cut(s) 272, 557, 634, 843, 891, 1133
OliI CACNNNNGTG 1 cut(s) 75
PaeI GCATGC 3 cut(s) 272, 634, 891
PciI ACATGT 1 cut(s) 839
PciSI GCTCTTC 1 cut(s) 322
PdmI GAANNNNTTC 2 cut(s) 118, 784
PfeI GAWTC 2 cut(s) 119, 125
PflMI CCANNNNNTGG 1 cut(s) 755
PkrI GCNGC 3 cut(s) 802, 1014, 1121
PleI GAGTC 1 cut(s) 174
PpsI GAGTC 1 cut(s) 174
PscI ACATGT 1 cut(s) 839
Psp6I CCWGG 3 cut(s) 349, 880, 952
PspEI GGTNACC 1 cut(s) 276
PspGI CCWGG 3 cut(s) 349, 880, 952
PspN4I GGNNCC 3 cut(s) 140, 853, 1167
PspPI GGNCC 7 cut(s) 26, 139, 369, 592, 687, 852, 1210
PsrI GAACNNNNNNTAC 1 cut(s) 34
PstI CTGCAG 2 cut(s) 805, 1121
PsuI RGATCY 1 cut(s) 536
PvuII CAGCTG 1 cut(s) 873
RsaI GTAC 2 cut(s) 499, 1177
RsaNI GTAC 2 cut(s) 498, 1176
RseI CAYNNNNRTG 2 cut(s) 75, 558
SalI GTCGAC 1 cut(s) 739
SapI GCTCTTC 1 cut(s) 322
SaqAI TTAA 2 cut(s) 1041, 1239
SatI GCNGC 3 cut(s) 801, 1013, 1120
Sau3AI GATC 7 cut(s) 185, 384, 511, 536, 1033, 1105, 1293
Sau96I GGNCC 7 cut(s) 26, 139, 369, 592, 687, 852, 1210
SchI GAGTC 1 cut(s) 175
ScrFI CCNGG 4 cut(s) 310, 351, 882, 954
SduI GDGCHC 1 cut(s) 817
SfcI CTRYAG 3 cut(s) 801, 1101, 1117
SinI GGWCC 5 cut(s) 139, 369, 687, 852, 1210
SmiMI CAYNNNNRTG 2 cut(s) 75, 558
SmlI CTYRAG 2 cut(s) 254, 929
SmoI CTYRAG 2 cut(s) 254, 929
SpeI ACTAGT 2 cut(s) 910, 938
SphI GCATGC 3 cut(s) 272, 634, 891
Sse9I AATT 7 cut(s) 45, 88, 585, 923, 1251, 1298, 1339
SsiI CCGC 2 cut(s) 690, 1012
SspMI CTAG 3 cut(s) 894, 911, 939
StyD4I CCNGG 4 cut(s) 308, 349, 880, 952
StyI CCWWGG 2 cut(s) 22, 1213
TaaI ACNGT 3 cut(s) 143, 966, 1143
TaiI ACGT 1 cut(s) 409
TaqI TCGA 4 cut(s) 175, 196, 514, 740
TasI AATT 7 cut(s) 45, 88, 585, 923, 1251, 1298, 1339
TauI GCSGC 1 cut(s) 1015
TfiI GAWTC 2 cut(s) 119, 125
Tru1I TTAA 2 cut(s) 1041, 1239
Tru9I TTAA 2 cut(s) 1041, 1239
TscAI CASTG 4 cut(s) 138, 709, 969, 979
TseFI GTSAC 2 cut(s) 276, 913
TseI GCWGC 2 cut(s) 800, 1119
Tsp45I GTSAC 2 cut(s) 276, 913
TspDTI ATGAA 4 cut(s) 23, 378, 1257, 1287
TspRI CASTG 4 cut(s) 138, 709, 969, 979
Van91I CCANNNNNTGG 1 cut(s) 755
VpaK11BI GGWCC 5 cut(s) 139, 369, 687, 852, 1210
XapI RAATTY 3 cut(s) 88, 1298, 1339
XceI RCATGY 6 cut(s) 272, 557, 634, 843, 891, 1133
XmiI GTMKAC 2 cut(s) 740, 836
XmnI GAANNNNTTC 2 cut(s) 118, 784
XspI CTAG 3 cut(s) 894, 911, 939
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.