Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001744.1

Orthogroup ID

OG0002746

Physical Location & Seq

Genomic Coordinates Forward (+)

25953 .. 31131

Gene Structure 5179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001744.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

atggatcttcctagaaggagcccttataggaagagtcaatctcgaacagaaagatcacctaatcaacatagaaagtcccagagaggcagttctcccgttagagagaagcattcaagtcgccccaagtctcccaagcatgcaaggtcgcccactcctcctcctcactctccttctcctcgcaccaaatggttaagaagagctcaagctggaagagtgcctgagagagaacatgaaaggaagaatggtagggggatcagtagggatttaccggaggggggtccagagagagaagttgggagtgatagaaatgagaaattgtcaggaagggatcataccgatggtaaatcttcaagatcaaggcatgttacctctccatcagatcaacaccggaggagtaggcgtagatctccctcacctaaacatcctgatgaaacaaaatatggagataaagtaattgagggccatgaaagaaatcatcacagagggagtgatagaagtatgcaaagggaaaagggctcagatagggaaaatgagacagaaggaatggagagagggacagaaaaagacagttctggtcatatgtcttcaagatcgagacatggggagtctacttcaccattgaatggacaccaggagaaaaaacacaaaactcattcgcctcgacaagctgcagataccagagctcactatgaggtgccagagtccagggaagctgagcatgggattgatgagaatgattcagtagcaatgatgagagctgctgaggaggccttggaagcacagaaaaagcaaaaaccttcatttgagctatctggaaagcttgctgcggaaaccaatagattcaggggtataacactcttatacactgagccagcagaaggacggccacctcgtgtaaaatggcggctttatgtttttaagggtggtgaagcttttaatgaacccattaagatacatcgccaaagctgttgccttttcgggagggaaagaagggtggcagacatccctacggatcacccgtcctgcagcaagcaacatgctgttctacaattccggcaagtagaaaaggagcaaccagatggtacattgtcaaaggaagtcaagccttacgtaatggatcttggaagcacaaataaaacttttgtcaatgaaactgcaattgaacctcagcgatattatgaacttatggaaaaagacacgattaaatttggtaatagtaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008283 GO:0009507 GO:0009536 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0019222 GO:0031047 GO:0031050 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0040008 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048519 GO:0048638 GO:0050789 GO:0050793 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

407

Amino Acids

46.69

Weight (kDa)

9.93

Isoelectric Point (pI)

67.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24410 AT3G20550
fragaria_vesca	FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_6g43590
malus_domestica	MD03G1208700.v1.1 MD06G1125500.v1.1 MD11G1223400.v1.1
prunus_persica	Prupe.4G208000_v2.0.a1
pyrus_communis	pycom06g11580 pycom11g19700
rosa_chinensis	RchiOBHm_Chr2g0160171 RchiOBHm_Chr4g0405041 RchiOBHm_Chr5g0037921
rosa_laevigata	RLG00000008882 RLG00000021201 RLG00000033823
rosa_multiflora	Rmu_sc0001744.1_g000004 Rmu_ssc0000241.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042940 Rroxscaffold_5G00349230
rosa_rugosa	Rorug04G0052500 Rorug05G0169400 Rorug05G0169500 Rorug05G0169600
rosa_samantha	Rh2BG560700 Rh4AG127600 Rh4BG121300 Rh4CG135400 Rh4DG121700 Rh5AG257700 Rh5BG260500 Rh5CG293100
rosa_wichuraiana	Rw2G045270 Rw4G010330 Rw5G023890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	694
AccB7I	CCANNNNNTGG	1 cut(s)	623
AccI	GTMKAC	1 cut(s)	608
AciI	CCGC	2 cut(s)	827, 904
AclWI	GGATC	5 cut(s)	12, 260, 336, 1020, 1125
AcoI	YGGCCR	1 cut(s)	884
AcsI	RAATTY	1 cut(s)	1205
AdeI	CACNNNGTG	1 cut(s)	893
AfaI	GTAC	1 cut(s)	1084
AfiI	CCNNNNNNNGG	3 cut(s)	275, 623, 878
AgsI	TTSAA	5 cut(s)	114, 351, 588, 622, 1163
AjnI	CCWGG	2 cut(s)	630, 704
Alw21I	GWGCWC	2 cut(s)	202, 685
Alw26I	GTCTC	3 cut(s)	132, 527, 589
AlwI	GGATC	5 cut(s)	12, 260, 336, 1020, 1125
AoxI	GGCC	3 cut(s)	460, 768, 884
ApeKI	GCWGC	4 cut(s)	668, 758, 824, 1026
ApoI	RAATTY	1 cut(s)	1205
AspS9I	GGNCC	2 cut(s)	278, 460
AsuHPI	GGTGA	5 cut(s)	48, 405, 606, 938, 1007
AvaII	GGWCC	1 cut(s)	278
BanI	GGYRCC	1 cut(s)	694
BanII	GRGCYC	4 cut(s)	23, 202, 518, 685
BarI	GAAGNNNNNNTAC	2 cut(s)	316, 348
BauI	CACGAG	1 cut(s)	891
BbsI	GAAGAC	1 cut(s)	576
Bbv12I	GWGCWC	2 cut(s)	202, 685
BbvCI	CCTCAGC	2 cut(s)	762, 1167
BbvI	GCAGC	4 cut(s)	655, 745, 811, 1038
BccI	CCATC	3 cut(s)	332, 382, 1073
BceAI	ACGGC	1 cut(s)	899
BcgI	CGANNNNNNTGC	2 cut(s)	98, 132
BciT130I	CCWGG	2 cut(s)	632, 706
BcoDI	GTCTC	3 cut(s)	132, 527, 589
BfaI	CTAG	1 cut(s)	12
BfmI	CTRYAG	2 cut(s)	669, 1024
BglII	AGATCT	1 cut(s)	404
BisI	GCNGC	5 cut(s)	669, 759, 825, 905, 1027
BlpI	GCTNAGC	1 cut(s)	714
BlsI	GCNGC	5 cut(s)	670, 760, 826, 906, 1028
Bme1390I	CCNGG	2 cut(s)	632, 706
Bme18I	GGWCC	1 cut(s)	278
BmgT120I	GGNCC	2 cut(s)	278, 460
BmiI	GGNNCC	3 cut(s)	20, 279, 696
BmrFI	CCNGG	2 cut(s)	632, 706
BpiI	GAAGAC	1 cut(s)	576
BplI	GAGNNNNNCTC	2 cut(s)	25, 57
Bpu10I	CCTNAGC	2 cut(s)	762, 1167
Bpu1102I	GCTNAGC	1 cut(s)	714
BpuEI	CTTGAG	1 cut(s)	186
BsaAI	YACGTR	1 cut(s)	1111
BsaJI	CCNNGG	2 cut(s)	705, 771
BsaWI	WCCGGW	2 cut(s)	268, 387
BsaXI	ACNNNNNCTCC	6 cut(s)	142, 172, 385, 415, 435, 465
Bsc4I	CCNNNNNNNGG	3 cut(s)	275, 623, 878
Bse3DI	GCAATG	1 cut(s)	753
BseBI	CCWGG	2 cut(s)	632, 706
BseDI	CCNNGG	2 cut(s)	705, 771
BseGI	GGATG	2 cut(s)	421, 1002
BseLI	CCNNNNNNNGG	3 cut(s)	275, 623, 878
BseMI	GCAATG	1 cut(s)	753
BseMII	CTCAG	6 cut(s)	210, 531, 705, 753, 858, 1181
BseRI	GAGGAG	6 cut(s)	144, 147, 150, 165, 406, 779
BseXI	GCAGC	4 cut(s)	655, 745, 811, 1038
BshFI	GGCC	3 cut(s)	462, 770, 886
BshNI	GGYRCC	1 cut(s)	694
BsiHKAI	GWGCWC	2 cut(s)	202, 685
BsiSI	CCGG	3 cut(s)	269, 388, 1054
BslFI	GGGAC	2 cut(s)	61, 568
BslI	CCNNNNNNNGG	3 cut(s)	275, 623, 878
BsmAI	GTCTC	3 cut(s)	132, 527, 589
BsmFI	GGGAC	2 cut(s)	61, 568
BsmI	GAATGC	1 cut(s)	109
BsnI	GGCC	3 cut(s)	462, 770, 886
Bsp1286I	GDGCHC	4 cut(s)	23, 202, 518, 685
Bsp1720I	GCTNAGC	1 cut(s)	714
BspACI	CCGC	2 cut(s)	827, 904
BspANI	GGCC	3 cut(s)	462, 770, 886
BspCNI	CTCAG	6 cut(s)	211, 530, 706, 754, 859, 1180
BspLI	GGNNCC	3 cut(s)	20, 279, 696
BspMAI	CTGCAG	2 cut(s)	673, 1028
BspPI	GGATC	5 cut(s)	12, 260, 336, 1020, 1125
BspQI	GCTCTTC	1 cut(s)	190
BspT107I	GGYRCC	1 cut(s)	694
BsrDI	GCAATG	1 cut(s)	753
BssECI	CCNNGG	2 cut(s)	705, 771
BssSI	CACGAG	1 cut(s)	891
BssT1I	CCWWGG	1 cut(s)	771
Bst2BI	CACGAG	1 cut(s)	891
Bst2UI	CCWGG	2 cut(s)	632, 706
Bst4CI	ACNGT	1 cut(s)	569
Bst6I	CTCTTC	3 cut(s)	26, 190, 205
BstBAI	YACGTR	1 cut(s)	1111
BstC8I	GCNNGC	4 cut(s)	138, 822, 873, 1031
BstDEI	CTNAG	6 cut(s)	219, 517, 714, 762, 867, 1167
BstF5I	GGATG	2 cut(s)	421, 1002
BstMAI	GTCTC	3 cut(s)	132, 527, 589
BstMWI	GCNNNNNNNGC	2 cut(s)	767, 776
BstNI	CCWGG	2 cut(s)	632, 706
BstNSI	RCATGY	3 cut(s)	140, 365, 1040
BstSCI	CCNGG	2 cut(s)	630, 704
BstSFI	CTRYAG	2 cut(s)	669, 1024
BstSNI	TACGTA	1 cut(s)	1111
BstV1I	GCAGC	4 cut(s)	655, 745, 811, 1038
BstV2I	GAAGAC	1 cut(s)	576
BstX2I	RGATCY	3 cut(s)	4, 404, 1117
BstYI	RGATCY	3 cut(s)	4, 404, 1117
BsuRI	GGCC	3 cut(s)	462, 770, 886
BtgZI	GCGATG	1 cut(s)	941
BtsCI	GGATG	2 cut(s)	421, 1002
BtsIMutI	CAGTG	1 cut(s)	864
Cac8I	GCNNGC	4 cut(s)	138, 822, 873, 1031
Cfr13I	GGNCC	2 cut(s)	278, 460
Csp6I	GTAC	1 cut(s)	1083
CviAII	CATG	7 cut(s)	137, 230, 362, 464, 599, 719, 1037
CviQI	GTAC	1 cut(s)	1083
DdeI	CTNAG	6 cut(s)	219, 517, 714, 762, 867, 1167
DraIII	CACNNNGTG	1 cut(s)	893
EaeI	YGGCCR	1 cut(s)	884
Eam1104I	CTCTTC	3 cut(s)	26, 190, 205
EarI	CTCTTC	3 cut(s)	26, 190, 205
Ecl136II	GAGCTC	2 cut(s)	200, 683
Eco105I	TACGTA	1 cut(s)	1111
Eco130I	CCWWGG	1 cut(s)	771
Eco147I	AGGCCT	1 cut(s)	770
Eco24I	GRGCYC	4 cut(s)	23, 202, 518, 685
Eco47I	GGWCC	1 cut(s)	278
Eco53kI	GAGCTC	2 cut(s)	200, 683
EcoICRI	GAGCTC	2 cut(s)	200, 683
EcoRII	CCWGG	2 cut(s)	630, 704
EcoT14I	CCWWGG	1 cut(s)	771
EcoT38I	GRGCYC	4 cut(s)	23, 202, 518, 685
ErhI	CCWWGG	1 cut(s)	771
FaeI	CATG	7 cut(s)	140, 233, 365, 467, 602, 722, 1040
FalI	AAGNNNNNCTT	2 cut(s)	7, 39
FaqI	GGGAC	2 cut(s)	61, 568
FatI	CATG	7 cut(s)	136, 229, 361, 463, 598, 718, 1036
FauNDI	CATATG	1 cut(s)	579
FblI	GTMKAC	1 cut(s)	608
Fnu4HI	GCNGC	5 cut(s)	669, 759, 825, 905, 1027
FokI	GGATG	2 cut(s)	408, 989
FriOI	GRGCYC	4 cut(s)	23, 202, 518, 685
Fsp4HI	GCNGC	5 cut(s)	669, 759, 825, 905, 1027
FspBI	CTAG	1 cut(s)	12
GluI	GCNGC	5 cut(s)	669, 759, 825, 905, 1027
HaeIII	GGCC	3 cut(s)	462, 770, 886
HapII	CCGG	3 cut(s)	269, 388, 1054
Hin1II	CATG	7 cut(s)	140, 233, 365, 467, 602, 722, 1040
HindIII	AAGCTT	2 cut(s)	818, 930
HinfI	GANTC	5 cut(s)	34, 605, 701, 737, 840
HpaII	CCGG	3 cut(s)	269, 388, 1054
HphI	GGTGA	5 cut(s)	48, 405, 606, 938, 1007
Hpy166II	GTNNAC	1 cut(s)	609
Hpy188I	TCNGA	2 cut(s)	379, 520
Hpy188III	TCNNGA	9 cut(s)	42, 281, 321, 351, 425, 588, 594, 813, 979
Hpy8I	GTNNAC	1 cut(s)	609
HpyAV	CCTTC	7 cut(s)	9, 180, 318, 533, 807, 872, 984
HpyCH4III	ACNGT	1 cut(s)	569
HpyCH4IV	ACGT	1 cut(s)	1110
HpyCH4V	TGCA	5 cut(s)	140, 502, 671, 1026, 1157
HpyF10VI	GCNNNNNNNGC	2 cut(s)	767, 776
HpyF3I	CTNAG	6 cut(s)	219, 517, 714, 762, 867, 1167
HpySE526I	ACGT	1 cut(s)	1110
Hsp92II	CATG	7 cut(s)	140, 233, 365, 467, 602, 722, 1040
LguI	GCTCTTC	1 cut(s)	190
LmnI	GCTCC	2 cut(s)	18, 1069
Lsp1109I	GCAGC	4 cut(s)	655, 745, 811, 1038
MaeI	CTAG	1 cut(s)	12
MaeII	ACGT	1 cut(s)	1110
MaeIII	GTNAC	1 cut(s)	364
MboII	GAAGA	6 cut(s)	43, 207, 222, 250, 339, 576
MfeI	CAATTG	1 cut(s)	1158
MflI	RGATCY	3 cut(s)	4, 404, 1117
MhlI	GDGCHC	4 cut(s)	23, 202, 518, 685
MluCI	AATT	5 cut(s)	314, 453, 1049, 1158, 1205
MlyI	GAGTC	3 cut(s)	43, 614, 710
MseI	TTAA	5 cut(s)	191, 918, 936, 948, 1203
MslI	CAYNNNNRTG	2 cut(s)	336, 426
MspI	CCGG	3 cut(s)	269, 388, 1054
MspR9I	CCNGG	2 cut(s)	632, 706
MunI	CAATTG	1 cut(s)	1158
Mva1269I	GAATGC	1 cut(s)	109
MvaI	CCWGG	2 cut(s)	632, 706
MwoI	GCNNNNNNNGC	2 cut(s)	767, 776
NdeI	CATATG	1 cut(s)	579
NlaIII	CATG	7 cut(s)	140, 233, 365, 467, 602, 722, 1040
NlaIV	GGNNCC	3 cut(s)	20, 279, 696
NspI	RCATGY	3 cut(s)	140, 365, 1040
PaeI	GCATGC	1 cut(s)	140
PceI	AGGCCT	1 cut(s)	770
PciSI	GCTCTTC	1 cut(s)	190
PcsI	WCGNNNNNNNCGW	2 cut(s)	889, 1016
PctI	GAATGC	1 cut(s)	109
PfeI	GAWTC	2 cut(s)	737, 840
PflMI	CCANNNNNTGG	1 cut(s)	623
PkrI	GCNGC	5 cut(s)	670, 760, 826, 906, 1028
PleI	GAGTC	3 cut(s)	42, 613, 709
PpsI	GAGTC	3 cut(s)	42, 613, 709
Ppu21I	YACGTR	1 cut(s)	1111
Psp124BI	GAGCTC	2 cut(s)	202, 685
Psp6I	CCWGG	2 cut(s)	630, 704
PspGI	CCWGG	2 cut(s)	630, 704
PspN4I	GGNNCC	3 cut(s)	20, 279, 696
PspPI	GGNCC	2 cut(s)	278, 460
PstI	CTGCAG	2 cut(s)	673, 1028
PsuI	RGATCY	3 cut(s)	4, 404, 1117
RsaI	GTAC	1 cut(s)	1084
RsaNI	GTAC	1 cut(s)	1083
RseI	CAYNNNNRTG	2 cut(s)	336, 426
SacI	GAGCTC	2 cut(s)	202, 685
SapI	GCTCTTC	1 cut(s)	190
SaqAI	TTAA	5 cut(s)	191, 918, 936, 948, 1203
SatI	GCNGC	5 cut(s)	669, 759, 825, 905, 1027
Sau96I	GGNCC	2 cut(s)	278, 460
SchI	GAGTC	3 cut(s)	43, 614, 710
ScrFI	CCNGG	2 cut(s)	632, 706
SduI	GDGCHC	4 cut(s)	23, 202, 518, 685
SfcI	CTRYAG	2 cut(s)	669, 1024
SinI	GGWCC	1 cut(s)	278
SmiMI	CAYNNNNRTG	2 cut(s)	336, 426
SmlI	CTYRAG	1 cut(s)	201
SmoI	CTYRAG	1 cut(s)	201
SnaBI	TACGTA	1 cut(s)	1111
SphI	GCATGC	1 cut(s)	140
Sse9I	AATT	5 cut(s)	314, 453, 1049, 1158, 1205
SseBI	AGGCCT	1 cut(s)	770
SsiI	CCGC	2 cut(s)	827, 904
SspMI	CTAG	1 cut(s)	12
SstI	GAGCTC	2 cut(s)	202, 685
StuI	AGGCCT	1 cut(s)	770
StyD4I	CCNGG	2 cut(s)	630, 704
StyI	CCWWGG	1 cut(s)	771
TaaI	ACNGT	1 cut(s)	569
TaiI	ACGT	1 cut(s)	1113
TaqI	TCGA	3 cut(s)	43, 593, 661
TasI	AATT	5 cut(s)	314, 453, 1049, 1158, 1205
TauI	GCSGC	1 cut(s)	907
TfiI	GAWTC	2 cut(s)	737, 840
Tru1I	TTAA	5 cut(s)	191, 918, 936, 948, 1203
Tru9I	TTAA	5 cut(s)	191, 918, 936, 948, 1203
TscAI	CASTG	1 cut(s)	871
TseI	GCWGC	4 cut(s)	668, 758, 824, 1026
TspDTI	ATGAA	7 cut(s)	246, 444, 480, 789, 954, 1164, 1194
TspGWI	ACGGA	1 cut(s)	1025
TspRI	CASTG	1 cut(s)	871
Van91I	CCANNNNNTGG	1 cut(s)	623
VpaK11BI	GGWCC	1 cut(s)	278
XapI	RAATTY	1 cut(s)	1205
XceI	RCATGY	3 cut(s)	140, 365, 1040
XmiI	GTMKAC	1 cut(s)	608
XspI	CTAG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.