Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0002746

Physical Location & Seq

Genomic Coordinates Reverse (-)

72216722 .. 72217234

Gene Structure 513 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G045270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGAGGACTGTTGAGGTGGCAAAAGAAAAGCAGAAACCATCGTTTGAGCTATCTAGAAATCTTGATGCAAAAACCAATAGGTTCAAAGGTGCAACACTATTATACTTGAAGCCAGCAGAAGGACGACAGCCTCATGTAAAATGGCGGCTTTATGTTTTCAAGGGTGGTGAAGATTTTAACAAACTCATTAAGATAGAGATGTTACCTTTTCGGAAGGGGAAGAAAGGTGGCATACCAAGTGAGCAACCTGATGGTACATTGTTGAAGAAAGTAAAGCCTTACATAATGGACCTCGAAAGCACAAATAGAACTTTTGTCAATGGTGTTGCAATTGAACCTCAAAGATATTATGAACTTATGGAAAAAGATACGATTAAATTTGGTAATAGTAGCCGAGAGTATGTGCTAGCTATTGCATGCGAATTCTATAGATTGATGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008283 GO:0009507 GO:0009536 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0019222 GO:0031047 GO:0031050 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0040008 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048519 GO:0048638 GO:0050789 GO:0050793 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

147

Amino Acids

17.1

Weight (kDa)

9.6

Isoelectric Point (pI)

29.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FHA	PF00498	92 - 128	4e-08	FHA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24410 AT3G20550
fragaria_vesca	FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_6g43590
malus_domestica	MD03G1208700.v1.1 MD06G1125500.v1.1 MD11G1223400.v1.1
prunus_persica	Prupe.4G208000_v2.0.a1
pyrus_communis	pycom06g11580 pycom11g19700
rosa_chinensis	RchiOBHm_Chr2g0160171 RchiOBHm_Chr4g0405041 RchiOBHm_Chr5g0037921
rosa_laevigata	RLG00000008882 RLG00000021201 RLG00000033823
rosa_multiflora	Rmu_sc0001744.1_g000004 Rmu_ssc0000241.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042940 Rroxscaffold_5G00349230
rosa_rugosa	Rorug04G0052500 Rorug05G0169400 Rorug05G0169500 Rorug05G0169600
rosa_samantha	Rh2BG560700 Rh4AG127600 Rh4BG121300 Rh4CG135400 Rh4DG121700 Rh5AG257700 Rh5BG260500 Rh5CG293100
rosa_wichuraiana	Rw2G045270 Rw4G010330 Rw5G023890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	145
AcsI	RAATTY	2 cut(s)	377, 422
AfaI	GTAC	1 cut(s)	256
AfiI	CCNNNNNNNGG	1 cut(s)	119
AgsI	TTSAA	5 cut(s)	85, 109, 160, 265, 335
AluBI	AGCT	2 cut(s)	49, 410
AluI	AGCT	2 cut(s)	49, 410
ApoI	RAATTY	2 cut(s)	377, 422
AspS9I	GGNCC	1 cut(s)	289
AsuHPI	GGTGA	1 cut(s)	179
AsuNHI	GCTAGC	1 cut(s)	406
AvaII	GGWCC	1 cut(s)	289
BccI	CCATC	3 cut(s)	46, 245, 430
BfaI	CTAG	2 cut(s)	54, 407
BfmI	CTRYAG	1 cut(s)	427
BisI	GCNGC	1 cut(s)	146
BlsI	GCNGC	1 cut(s)	147
Bme18I	GGWCC	1 cut(s)	289
BmgT120I	GGNCC	1 cut(s)	289
BmsI	GCATC	1 cut(s)	55
BmtI	GCTAGC	1 cut(s)	410
Bsc4I	CCNNNNNNNGG	1 cut(s)	119
BseLI	CCNNNNNNNGG	1 cut(s)	119
BslI	CCNNNNNNNGG	1 cut(s)	119
BspACI	CCGC	1 cut(s)	145
BspOI	GCTAGC	1 cut(s)	410
Bst4CI	ACNGT	1 cut(s)	10
BstC8I	GCNNGC	3 cut(s)	114, 408, 418
BstNSI	RCATGY	1 cut(s)	420
BstSFI	CTRYAG	1 cut(s)	427
Cac8I	GCNNGC	3 cut(s)	114, 408, 418
Cfr13I	GGNCC	1 cut(s)	289
Csp6I	GTAC	1 cut(s)	255
CviAII	CATG	2 cut(s)	134, 417
CviJI	RGCY	7 cut(s)	49, 112, 130, 148, 277, 393, 410
CviKI_1	RGCY	7 cut(s)	49, 112, 130, 148, 277, 393, 410
CviQI	GTAC	1 cut(s)	255
Eco47I	GGWCC	1 cut(s)	289
EcoRI	GAATTC	1 cut(s)	422
FaeI	CATG	2 cut(s)	137, 420
FatI	CATG	2 cut(s)	133, 416
Fnu4HI	GCNGC	1 cut(s)	146
Fsp4HI	GCNGC	1 cut(s)	146
FspBI	CTAG	2 cut(s)	54, 407
GluI	GCNGC	1 cut(s)	146
Hin1II	CATG	2 cut(s)	137, 420
HphI	GGTGA	1 cut(s)	179
Hpy188I	TCNGA	1 cut(s)	213
Hpy188III	TCNNGA	2 cut(s)	54, 62
HpyAV	CCTTC	2 cut(s)	113, 208
HpyCH4III	ACNGT	1 cut(s)	10
HpyCH4V	TGCA	4 cut(s)	68, 92, 329, 416
Hsp92II	CATG	2 cut(s)	137, 420
LpnPI	CCDG	2 cut(s)	126, 261
LweI	GCATC	1 cut(s)	55
MaeI	CTAG	2 cut(s)	54, 407
MaeIII	GTNAC	1 cut(s)	201
MboII	GAAGA	3 cut(s)	182, 232, 277
MfeI	CAATTG	1 cut(s)	330
MluCI	AATT	3 cut(s)	330, 377, 422
MnlI	CCTC	4 cut(s)	7, 141, 302, 348
MseI	TTAA	3 cut(s)	177, 189, 375
MunI	CAATTG	1 cut(s)	330
NheI	GCTAGC	1 cut(s)	406
NlaIII	CATG	2 cut(s)	137, 420
NmeAIII	GCCGAG	1 cut(s)	419
NspI	RCATGY	1 cut(s)	420
PaeI	GCATGC	1 cut(s)	420
PkrI	GCNGC	1 cut(s)	147
PspPI	GGNCC	1 cut(s)	289
RsaI	GTAC	1 cut(s)	256
RsaNI	GTAC	1 cut(s)	255
SaqAI	TTAA	3 cut(s)	177, 189, 375
SatI	GCNGC	1 cut(s)	146
Sau96I	GGNCC	1 cut(s)	289
SfaNI	GCATC	1 cut(s)	55
SfcI	CTRYAG	1 cut(s)	427
SinI	GGWCC	1 cut(s)	289
SphI	GCATGC	1 cut(s)	420
Sse9I	AATT	3 cut(s)	330, 377, 422
SsiI	CCGC	1 cut(s)	145
SspMI	CTAG	2 cut(s)	54, 407
TaaI	ACNGT	1 cut(s)	10
TaqI	TCGA	1 cut(s)	294
TasI	AATT	3 cut(s)	330, 377, 422
TauI	GCSGC	1 cut(s)	148
Tru1I	TTAA	3 cut(s)	177, 189, 375
Tru9I	TTAA	3 cut(s)	177, 189, 375
TspDTI	ATGAA	1 cut(s)	366
VpaK11BI	GGWCC	1 cut(s)	289
XapI	RAATTY	2 cut(s)	377, 422
XbaI	TCTAGA	1 cut(s)	53
XceI	RCATGY	1 cut(s)	420
XspI	CTAG	2 cut(s)	54, 407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.