Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002746

Physical Location & Seq

Genomic Coordinates Reverse (-)

32639230 .. 32646517

Gene Structure 7288 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG260500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGGGGCGTAATCTTAGAAATGATTCTGAATCTCCAGTGAGGGACCGTGGGTCTCCTCGTAGGAGGAAGAGTCAATCTCGAACAGAGAGATCACCTACTCGACATAGAAAGTCCAACAGGGGAAGTTCTCCACCAAGAGAGAAACATTCAAGTCGCCCCAAGTCTCCCAAGCATGCAAGGTCACCCTCTCCTCCTCCTCGCTCTCCTTCTCCCCGGACAAAACGGCTAAGAAGAGCTGAAGCTGGAAGAGTGCCTGGGAGAGAACATGAAAGGATCAATGATAGGGGGATCAGTAGGGATTTACAGGAACGTGGTTCGGAGAGAGATGTTGGGAGTGATAGAAAGGAGAGATTGTCGGGAAGGAATGACACTGATGATAAATCTTCAAGAACAAGGCGTGGTACTTCTCCATCAGATCGACACCGCACGAGTAGGCATAGATCTCACTCACCTCTACATGCTGGTGATACAAGAGATGGGGAGAAAGTAATTGAGGGCCGTGGAAGAAATCGTAGCAGAGGGAGTGAGAAAAGCATGCACAGGGAAAAAAGTGCAGATGGGGAAAACGAGACTGAAAGAATGGAGAGAAGGACAGCAAAAGACAGCACTGGTCATAAGTCTTCAAGATCAAGACATGGGCAGTCGACTTCTCCGTTGAATGGACACCACAAGAACAGACACCGAACTCATTCACCTCAACAAGCTGCAGATACCAGAGCCCGTGATGAGGTGCCAGAGTCAAGGGAGGCTGAGGATGGGATTGATGAGAATGATTCAGTAGCTATGATGAGGGCTGCTGAGGAAGCTTTGGAAGCACAGAAAAAGCAAAAACCTTCATTTGAGCTATCTGGAAAGCTTGCTGCGGAAACCAATAGATTCAGGGGTATAACACTGTTATACACTGAGCCAGCAGAAGGACGGCCACCTCATGTAAAATGGCGGCTTTATGTTTTCAAGGGTGGTGAAGTTCTTAATGATCCCATTAAGATACATCGGCAAAGCTGTTACCTTTTCGGGAGGGAAAGAAGGGTGGCAGACATCCCTACAGATCACCCATCCTGCAGCAAACAACATGCTGTTATACAGTTCCGGCAAGTAGAGAAGGAGGAACCTGATGGTACATTGTCAAAGGAAGTAAAGCCTTACATAATGGACCTTGGAAGCACAAATAAGACCTTTGTTAATGAAAGTGCAATTGAACCTCAGCGATATTATGAACTGATGGAAAGAGACACGATCAAATTTGGTAATAGTAGCCGAGAGTATGTGCTACTGCACGAGAATTCTATGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008283 GO:0009507 GO:0009536 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0019222 GO:0031047 GO:0031050 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0040008 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048519 GO:0048638 GO:0050789 GO:0050793 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

431

Amino Acids

49.42

Weight (kDa)

10.26

Isoelectric Point (pI)

68.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FHA	PF00498	336 - 416	1e-15	FHA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24410 AT3G20550
fragaria_vesca	FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_6g43590
malus_domestica	MD03G1208700.v1.1 MD06G1125500.v1.1 MD11G1223400.v1.1
prunus_persica	Prupe.4G208000_v2.0.a1
pyrus_communis	pycom06g11580 pycom11g19700
rosa_chinensis	RchiOBHm_Chr2g0160171 RchiOBHm_Chr4g0405041 RchiOBHm_Chr5g0037921
rosa_laevigata	RLG00000008882 RLG00000021201 RLG00000033823
rosa_multiflora	Rmu_sc0001744.1_g000004 Rmu_ssc0000241.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042940 Rroxscaffold_5G00349230
rosa_rugosa	Rorug04G0052500 Rorug05G0169400 Rorug05G0169500 Rorug05G0169600
rosa_samantha	Rh2BG560700 Rh4AG127600 Rh4BG121300 Rh4CG135400 Rh4DG121700 Rh5AG257700 Rh5BG260500 Rh5CG293100
rosa_wichuraiana	Rw2G045270 Rw4G010330 Rw5G023890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	730
AccI	GTMKAC	1 cut(s)	644
AciI	CCGC	3 cut(s)	424, 863, 940
AclWI	GGATC	3 cut(s)	281, 296, 971
AcoI	YGGCCR	1 cut(s)	920
AcsI	RAATTY	2 cut(s)	1241, 1282
AcuI	CTGAAG	1 cut(s)	258
AfaI	GTAC	2 cut(s)	403, 1120
AfiI	CCNNNNNNNGG	3 cut(s)	659, 727, 914
AgsI	TTSAA	6 cut(s)	150, 387, 624, 658, 955, 1199
AhdI	GACNNNNNGTC	1 cut(s)	49
AjnI	CCWGG	1 cut(s)	253
AluBI	AGCT	8 cut(s)	236, 242, 704, 782, 806, 844, 856, 1002
AluI	AGCT	8 cut(s)	236, 242, 704, 782, 806, 844, 856, 1002
Alw26I	GTCTC	4 cut(s)	57, 168, 563, 1224
AlwI	GGATC	3 cut(s)	281, 296, 971
AoxI	GGCC	2 cut(s)	496, 920
ApeKI	GCWGC	4 cut(s)	704, 794, 860, 1062
ApoI	RAATTY	2 cut(s)	1241, 1282
Asp700I	GAANNNNTTC	2 cut(s)	22, 688
AspS9I	GGNCC	3 cut(s)	43, 496, 1153
AsuC2I	CCSGG	1 cut(s)	214
AsuHPI	GGTGA	7 cut(s)	84, 174, 441, 476, 684, 974, 1043
AvaII	GGWCC	2 cut(s)	43, 1153
BanI	GGYRCC	1 cut(s)	730
BanII	GRGCYC	1 cut(s)	721
BauI	CACGAG	2 cut(s)	427, 1277
BbsI	GAAGAC	1 cut(s)	612
BbvCI	CCTCAGC	3 cut(s)	750, 798, 1203
BbvI	GCAGC	4 cut(s)	691, 781, 847, 1074
BccI	CCATC	7 cut(s)	418, 470, 551, 749, 1063, 1109, 1216
BceAI	ACGGC	3 cut(s)	239, 483, 935
BciT130I	CCWGG	1 cut(s)	255
BcnI	CCSGG	1 cut(s)	214
BcoDI	GTCTC	4 cut(s)	57, 168, 563, 1224
BfmI	CTRYAG	3 cut(s)	705, 1044, 1060
BglII	AGATCT	1 cut(s)	440
BisI	GCNGC	5 cut(s)	705, 795, 861, 941, 1063
BlsI	GCNGC	5 cut(s)	706, 796, 862, 942, 1064
Bme1390I	CCNGG	2 cut(s)	214, 255
Bme18I	GGWCC	2 cut(s)	43, 1153
BmeRI	GACNNNNNGTC	1 cut(s)	49
BmgT120I	GGNCC	3 cut(s)	43, 496, 1153
BmiI	GGNNCC	3 cut(s)	44, 732, 1110
BmrFI	CCNGG	2 cut(s)	214, 255
BpiI	GAAGAC	1 cut(s)	612
BplI	GAGNNNNNCTC	2 cut(s)	61, 93
BpmI	CTGGAG	1 cut(s)	18
Bpu10I	CCTNAGC	3 cut(s)	750, 798, 1203
BpuMI	CCSGG	1 cut(s)	214
BsaI	GGTCTC	1 cut(s)	57
BsaJI	CCNNGG	5 cut(s)	46, 212, 254, 499, 1156
BsaXI	ACNNNNNCTCC	4 cut(s)	55, 85, 338, 368
Bsc4I	CCNNNNNNNGG	3 cut(s)	659, 727, 914
Bse1I	ACTGG	2 cut(s)	35, 613
BseBI	CCWGG	1 cut(s)	255
BseDI	CCNNGG	5 cut(s)	46, 212, 254, 499, 1156
BseGI	GGATG	3 cut(s)	760, 1038, 1055
BseLI	CCNNNNNNNGG	3 cut(s)	659, 727, 914
BseMII	CTCAG	4 cut(s)	741, 789, 894, 1217
BseNI	ACTGG	2 cut(s)	35, 613
BseRI	GAGGAG	4 cut(s)	45, 180, 183, 186
BseXI	GCAGC	4 cut(s)	691, 781, 847, 1074
BsgI	GTGCAG	2 cut(s)	573, 1259
BshFI	GGCC	2 cut(s)	498, 922
BshNI	GGYRCC	1 cut(s)	730
BsiSI	CCGG	2 cut(s)	214, 1090
BslFI	GGGAC	1 cut(s)	56
BslI	CCNNNNNNNGG	3 cut(s)	659, 727, 914
BsmAI	GTCTC	4 cut(s)	57, 168, 563, 1224
BsmFI	GGGAC	1 cut(s)	56
BsnI	GGCC	2 cut(s)	498, 922
Bso31I	GGTCTC	1 cut(s)	57
Bsp1286I	GDGCHC	1 cut(s)	721
Bsp143I	GATC	9 cut(s)	89, 273, 288, 415, 440, 626, 976, 1048, 1236
BspACI	CCGC	3 cut(s)	424, 863, 940
BspANI	GGCC	2 cut(s)	498, 922
BspCNI	CTCAG	4 cut(s)	742, 790, 895, 1216
BspLI	GGNNCC	3 cut(s)	44, 732, 1110
BspMAI	CTGCAG	2 cut(s)	709, 1064
BspPI	GGATC	3 cut(s)	281, 296, 971
BspQI	GCTCTTC	1 cut(s)	226
BspT107I	GGYRCC	1 cut(s)	730
BspTNI	GGTCTC	1 cut(s)	57
BsrI	ACTGG	2 cut(s)	35, 613
BssECI	CCNNGG	5 cut(s)	46, 212, 254, 499, 1156
BssMI	GATC	9 cut(s)	89, 273, 288, 415, 440, 626, 976, 1048, 1236
BssSI	CACGAG	2 cut(s)	427, 1277
BssT1I	CCWWGG	1 cut(s)	1156
Bst2BI	CACGAG	2 cut(s)	427, 1277
Bst2UI	CCWGG	1 cut(s)	255
Bst4CI	ACNGT	3 cut(s)	47, 894, 1086
Bst6I	CTCTTC	3 cut(s)	62, 226, 241
BstC8I	GCNNGC	4 cut(s)	174, 536, 858, 909
BstDEI	CTNAG	6 cut(s)	14, 227, 750, 798, 903, 1203
BstDSI	CCRYGG	2 cut(s)	46, 499
BstEII	GGTNACC	1 cut(s)	180
BstF5I	GGATG	3 cut(s)	760, 1038, 1055
BstKTI	GATC	9 cut(s)	92, 276, 291, 418, 443, 629, 979, 1051, 1239
BstMAI	GTCTC	4 cut(s)	57, 168, 563, 1224
BstMBI	GATC	9 cut(s)	89, 273, 288, 415, 440, 626, 976, 1048, 1236
BstMWI	GCNNNNNNNGC	2 cut(s)	803, 812
BstNI	CCWGG	1 cut(s)	255
BstNSI	RCATGY	4 cut(s)	176, 461, 538, 1076
BstPI	GGTNACC	1 cut(s)	180
BstSCI	CCNGG	2 cut(s)	212, 253
BstSFI	CTRYAG	3 cut(s)	705, 1044, 1060
BstV1I	GCAGC	4 cut(s)	691, 781, 847, 1074
BstV2I	GAAGAC	1 cut(s)	612
BstX2I	RGATCY	1 cut(s)	440
BstYI	RGATCY	1 cut(s)	440
BsuRI	GGCC	2 cut(s)	498, 922
BtgI	CCRYGG	2 cut(s)	46, 499
BtsCI	GGATG	3 cut(s)	760, 1038, 1055
BtsIMutI	CAGTG	5 cut(s)	42, 369, 606, 890, 900
Cac8I	GCNNGC	4 cut(s)	174, 536, 858, 909
Cfr13I	GGNCC	3 cut(s)	43, 496, 1153
Csp6I	GTAC	2 cut(s)	402, 1119
CviAII	CATG	7 cut(s)	173, 266, 458, 535, 635, 929, 1073
CviQI	GTAC	2 cut(s)	402, 1119
DdeI	CTNAG	6 cut(s)	14, 227, 750, 798, 903, 1203
DpnI	GATC	9 cut(s)	91, 275, 290, 417, 442, 628, 978, 1050, 1238
DpnII	GATC	9 cut(s)	89, 273, 288, 415, 440, 626, 976, 1048, 1236
DriI	GACNNNNNGTC	1 cut(s)	49
EaeI	YGGCCR	1 cut(s)	920
Eam1104I	CTCTTC	3 cut(s)	62, 226, 241
Eam1105I	GACNNNNNGTC	1 cut(s)	49
EarI	CTCTTC	3 cut(s)	62, 226, 241
Eco130I	CCWWGG	1 cut(s)	1156
Eco24I	GRGCYC	1 cut(s)	721
Eco31I	GGTCTC	1 cut(s)	57
Eco47I	GGWCC	2 cut(s)	43, 1153
Eco57I	CTGAAG	1 cut(s)	258
Eco91I	GGTNACC	1 cut(s)	180
EcoO65I	GGTNACC	1 cut(s)	180
EcoRI	GAATTC	1 cut(s)	1282
EcoRII	CCWGG	1 cut(s)	253
EcoT14I	CCWWGG	1 cut(s)	1156
EcoT38I	GRGCYC	1 cut(s)	721
ErhI	CCWWGG	1 cut(s)	1156
FaeI	CATG	7 cut(s)	176, 269, 461, 538, 638, 932, 1076
FaqI	GGGAC	1 cut(s)	56
FatI	CATG	7 cut(s)	172, 265, 457, 534, 634, 928, 1072
FblI	GTMKAC	1 cut(s)	644
Fnu4HI	GCNGC	5 cut(s)	705, 795, 861, 941, 1063
FokI	GGATG	3 cut(s)	767, 1025, 1042
FriOI	GRGCYC	1 cut(s)	721
Fsp4HI	GCNGC	5 cut(s)	705, 795, 861, 941, 1063
GluI	GCNGC	5 cut(s)	705, 795, 861, 941, 1063
GsuI	CTGGAG	1 cut(s)	18
HaeIII	GGCC	2 cut(s)	498, 922
HapII	CCGG	2 cut(s)	214, 1090
Hin1II	CATG	7 cut(s)	176, 269, 461, 538, 638, 932, 1076
HincII	GTYRAC	1 cut(s)	645
HindII	GTYRAC	1 cut(s)	645
HindIII	AAGCTT	2 cut(s)	804, 854
HinfI	GANTC	6 cut(s)	23, 29, 70, 737, 773, 876
HpaII	CCGG	2 cut(s)	214, 1090
HphI	GGTGA	7 cut(s)	84, 174, 441, 476, 684, 974, 1043
Hpy166II	GTNNAC	1 cut(s)	645
Hpy188I	TCNGA	3 cut(s)	28, 319, 415
Hpy188III	TCNNGA	7 cut(s)	78, 357, 387, 624, 630, 849, 1015
Hpy8I	GTNNAC	1 cut(s)	645
HpyAV	CCTTC	7 cut(s)	216, 354, 582, 843, 908, 1020, 1096
HpyCH4III	ACNGT	3 cut(s)	47, 894, 1086
HpyCH4IV	ACGT	1 cut(s)	310
HpyCH4V	TGCA	7 cut(s)	176, 538, 554, 707, 1062, 1193, 1276
HpyF10VI	GCNNNNNNNGC	2 cut(s)	803, 812
HpyF3I	CTNAG	6 cut(s)	14, 227, 750, 798, 903, 1203
HpySE526I	ACGT	1 cut(s)	310
Hsp92II	CATG	7 cut(s)	176, 269, 461, 538, 638, 932, 1076
Kzo9I	GATC	9 cut(s)	89, 273, 288, 415, 440, 626, 976, 1048, 1236
LguI	GCTCTTC	1 cut(s)	226
Lsp1109I	GCAGC	4 cut(s)	691, 781, 847, 1074
MaeII	ACGT	1 cut(s)	310
MaeIII	GTNAC	2 cut(s)	180, 1004
MalI	GATC	9 cut(s)	91, 275, 290, 417, 442, 628, 978, 1050, 1238
MboI	GATC	9 cut(s)	89, 273, 288, 415, 440, 626, 976, 1048, 1236
MboII	GAAGA	6 cut(s)	79, 243, 258, 375, 516, 612
MfeI	CAATTG	1 cut(s)	1194
MflI	RGATCY	1 cut(s)	440
MhlI	GDGCHC	1 cut(s)	721
MluCI	AATT	4 cut(s)	489, 1194, 1241, 1282
MlyI	GAGTC	2 cut(s)	79, 746
MmeI	TCCRAC	1 cut(s)	138
MroXI	GAANNNNTTC	2 cut(s)	22, 688
MseI	TTAA	3 cut(s)	972, 984, 1182
MslI	CAYNNNNRTG	1 cut(s)	462
MspI	CCGG	2 cut(s)	214, 1090
MspR9I	CCNGG	2 cut(s)	214, 255
MunI	CAATTG	1 cut(s)	1194
MvaI	CCWGG	1 cut(s)	255
MwoI	GCNNNNNNNGC	2 cut(s)	803, 812
NciI	CCSGG	1 cut(s)	214
NdeII	GATC	9 cut(s)	89, 273, 288, 415, 440, 626, 976, 1048, 1236
NlaIII	CATG	7 cut(s)	176, 269, 461, 538, 638, 932, 1076
NlaIV	GGNNCC	3 cut(s)	44, 732, 1110
NmeAIII	GCCGAG	1 cut(s)	1283
NmuCI	GTSAC	1 cut(s)	180
NspI	RCATGY	4 cut(s)	176, 461, 538, 1076
PaeI	GCATGC	2 cut(s)	176, 538
PciSI	GCTCTTC	1 cut(s)	226
PcsI	WCGNNNNNNNCGW	1 cut(s)	650
PdmI	GAANNNNTTC	2 cut(s)	22, 688
PfeI	GAWTC	4 cut(s)	23, 29, 773, 876
PkrI	GCNGC	5 cut(s)	706, 796, 862, 942, 1064
PleI	GAGTC	2 cut(s)	78, 745
PpsI	GAGTC	2 cut(s)	78, 745
Psp6I	CCWGG	1 cut(s)	253
PspEI	GGTNACC	1 cut(s)	180
PspGI	CCWGG	1 cut(s)	253
PspN4I	GGNNCC	3 cut(s)	44, 732, 1110
PspPI	GGNCC	3 cut(s)	43, 496, 1153
PstI	CTGCAG	2 cut(s)	709, 1064
PsuI	RGATCY	1 cut(s)	440
RsaI	GTAC	2 cut(s)	403, 1120
RsaNI	GTAC	2 cut(s)	402, 1119
RseI	CAYNNNNRTG	1 cut(s)	462
SalI	GTCGAC	1 cut(s)	643
SapI	GCTCTTC	1 cut(s)	226
SaqAI	TTAA	3 cut(s)	972, 984, 1182
SatI	GCNGC	5 cut(s)	705, 795, 861, 941, 1063
Sau3AI	GATC	9 cut(s)	89, 273, 288, 415, 440, 626, 976, 1048, 1236
Sau96I	GGNCC	3 cut(s)	43, 496, 1153
SchI	GAGTC	2 cut(s)	79, 746
ScrFI	CCNGG	2 cut(s)	214, 255
SduI	GDGCHC	1 cut(s)	721
SfcI	CTRYAG	3 cut(s)	705, 1044, 1060
SinI	GGWCC	2 cut(s)	43, 1153
SmiMI	CAYNNNNRTG	1 cut(s)	462
SphI	GCATGC	2 cut(s)	176, 538
Sse9I	AATT	4 cut(s)	489, 1194, 1241, 1282
SsiI	CCGC	3 cut(s)	424, 863, 940
StyD4I	CCNGG	2 cut(s)	212, 253
StyI	CCWWGG	1 cut(s)	1156
TaaI	ACNGT	3 cut(s)	47, 894, 1086
TaiI	ACGT	1 cut(s)	313
TaqI	TCGA	4 cut(s)	79, 100, 418, 644
TasI	AATT	4 cut(s)	489, 1194, 1241, 1282
TauI	GCSGC	1 cut(s)	943
TfiI	GAWTC	4 cut(s)	23, 29, 773, 876
Tru1I	TTAA	3 cut(s)	972, 984, 1182
Tru9I	TTAA	3 cut(s)	972, 984, 1182
TscAI	CASTG	5 cut(s)	42, 376, 613, 897, 907
TseFI	GTSAC	1 cut(s)	180
TseI	GCWGC	4 cut(s)	704, 794, 860, 1062
Tsp45I	GTSAC	1 cut(s)	180
TspDTI	ATGAA	4 cut(s)	282, 825, 1200, 1230
TspGWI	ACGGA	1 cut(s)	642
TspRI	CASTG	5 cut(s)	42, 376, 613, 897, 907
VpaK11BI	GGWCC	2 cut(s)	43, 1153
XapI	RAATTY	2 cut(s)	1241, 1282
XceI	RCATGY	4 cut(s)	176, 461, 538, 1076
XmiI	GTMKAC	1 cut(s)	644
XmnI	GAANNNNTTC	2 cut(s)	22, 688

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.