Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002746

Physical Location & Seq

Genomic Coordinates Reverse (-)

41745593 .. 41751344

Gene Structure 5752 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008882

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGTTTGTTAGGGGAAGAAGGCATGGGCATTTGAAAAGTTCCTTGATGGGGCATAATCTAAAAAATCATTCTGAATCTCCAGTACGTGACCATGGATCTCCTCCTAGAAGGAGCCCTTATAGGAAGAGTCAATCTCGAACAGAAATATCACCTAATCGACATAGAAGGTCCCAGAGAGGCAGTTCTCCCGTTAGAGAGAAGCATTCAAGTCGCCCCAAGTCTCCAAAGCATGCAAGGTCGCCCACTCCTCCTCCTCGCTCTCCTTCTCCCCGCACCAAACGGTTAAGAAGAGCTCAAGCTGGAAGAGTGCCTGAGAGAGAACATGAAAGGAACAATGGTAGGGGGATCGGTAGGGATTTACAGGAGGGGAGTCCAGTGAGAGAAGTTGGGAGTGATAGAAATGAGCAATTGTTGGGAAGGGATTATACCGATGGTAAATCTTCAAGATCAAGGCATGTTATCTCTCCATCAGATCGACACCGGAGGAGTAGGCATAGATCTCTCTCACCTCAACATCCTGATGAAACAAAATATGGAGATAACGTAATTGAGGGCCATGAAAGAAATCATCACAGAGGGAGTGATAGAAGTATGCAAAGGGAAAAGGGCTCAGATAGGGAAAATGAGACTGAAGGAATGGAGAGAGGGACAGAAAAAGACAGTTCTGGTCATAGGTCTTCAAGATCGAGACATGTGGAGTCTACTTCACCGTTGAATGGACACCAGAAGAAAAAACACAAAACTCATTCGCCTCGACAAGCTGCAGATACCAGATCTCACTATGAGTTGACTACATATATTATTGTTCCAAACAACTTGGGCATCACATGCCTACACACTGGAATATATTCTGGGGTCCGAAAGTATGAGAACACACGAATTATACTGGTGATTTGTTGTTTGTCAGGTATAACACTATTATATACTGAGCCAGCAGAAGGACGGCCACCTCGTGTAAAATGGCGGCTTTATGGTTTTAAGGGTGAACCCATTAAGATACATCGCCAAAGCTGTTACCTTTTCGGGAGGGAAAGAAGGGTGGCAGACATCCCTACGGATCACCCGTCCTGCAGCAAGCAACATGCTGTTCTACAATTCCGGCAAGTAGAAAAGGAGCAACCTGATGGTACATTGTCAAAGGAAGTCAAGCCTTATGTAATGGATCTTGGAAGCACCAATAAAACTTTTGTCAATGAAACTGCAATTGAACCTCAGCGATATTATGAACTTATGGAAAAAGACACGATTAAATTTGGTAATAGTAGCCGAGAGTATGTTCTACTGCATGAGAAATCTATGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008283 GO:0009507 GO:0009536 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0019222 GO:0031047 GO:0031050 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0040008 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048519 GO:0048638 GO:0050789 GO:0050793 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

435

Amino Acids

50.01

Weight (kDa)

10.25

Isoelectric Point (pI)

71.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FHA	PF00498	339 - 419	1.1e-15	FHA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24410 AT3G20550
fragaria_vesca	FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_6g43590
malus_domestica	MD03G1208700.v1.1 MD06G1125500.v1.1 MD11G1223400.v1.1
prunus_persica	Prupe.4G208000_v2.0.a1
pyrus_communis	pycom06g11580 pycom11g19700
rosa_chinensis	RchiOBHm_Chr2g0160171 RchiOBHm_Chr4g0405041 RchiOBHm_Chr5g0037921
rosa_laevigata	RLG00000008882 RLG00000021201 RLG00000033823
rosa_multiflora	Rmu_sc0001744.1_g000004 Rmu_ssc0000241.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042940 Rroxscaffold_5G00349230
rosa_rugosa	Rorug04G0052500 Rorug05G0169400 Rorug05G0169500 Rorug05G0169600
rosa_samantha	Rh2BG560700 Rh4AG127600 Rh4BG121300 Rh4CG135400 Rh4DG121700 Rh5AG257700 Rh5BG260500 Rh5CG293100
rosa_wichuraiana	Rw2G045270 Rw4G010330 Rw5G023890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	701
AciI	CCGC	2 cut(s)	271, 964
AclWI	GGATC	4 cut(s)	103, 353, 1065, 1170
AcoI	YGGCCR	1 cut(s)	944
AcsI	RAATTY	1 cut(s)	1250
AcuI	CTGAAG	1 cut(s)	651
AdeI	CACNNNGTG	1 cut(s)	953
AfaI	GTAC	2 cut(s)	84, 1129
AfiI	CCNNNNNNNGG	3 cut(s)	48, 716, 938
AflIII	ACRYGT	1 cut(s)	691
AgsI	TTSAA	6 cut(s)	34, 207, 444, 681, 715, 1208
AluBI	AGCT	4 cut(s)	293, 299, 761, 1011
AluI	AGCT	4 cut(s)	293, 299, 761, 1011
Alw21I	GWGCWC	1 cut(s)	295
Alw26I	GTCTC	3 cut(s)	225, 620, 682
AlwI	GGATC	4 cut(s)	103, 353, 1065, 1170
AoxI	GGCC	2 cut(s)	553, 944
ApeKI	GCWGC	2 cut(s)	761, 1071
ApoI	RAATTY	1 cut(s)	1250
Asp700I	GAANNNNTTC	1 cut(s)	847
AspS9I	GGNCC	3 cut(s)	168, 553, 856
AsuHPI	GGTGA	6 cut(s)	141, 498, 699, 901, 995, 1052
AvaII	GGWCC	2 cut(s)	168, 856
BanII	GRGCYC	3 cut(s)	116, 295, 611
BarI	GAAGNNNNNNTAC	2 cut(s)	409, 441
BauI	CACGAG	1 cut(s)	951
BbsI	GAAGAC	1 cut(s)	669
Bbv12I	GWGCWC	1 cut(s)	295
BbvCI	CCTCAGC	1 cut(s)	1212
BbvI	GCAGC	2 cut(s)	748, 1083
BccI	CCATC	4 cut(s)	40, 425, 475, 1118
BceAI	ACGGC	1 cut(s)	959
BcgI	CGANNNNNNTGC	2 cut(s)	191, 225
BcoDI	GTCTC	3 cut(s)	225, 620, 682
BfaI	CTAG	1 cut(s)	105
BfmI	CTRYAG	2 cut(s)	762, 1069
BglII	AGATCT	2 cut(s)	497, 773
BisI	GCNGC	3 cut(s)	762, 965, 1072
BlsI	GCNGC	3 cut(s)	763, 966, 1073
Bme18I	GGWCC	2 cut(s)	168, 856
BmgT120I	GGNCC	3 cut(s)	168, 553, 856
BmiI	GGNNCC	3 cut(s)	113, 170, 857
BmsI	GCATC	1 cut(s)	831
BpiI	GAAGAC	1 cut(s)	669
BplI	GAGNNNNNCTC	2 cut(s)	118, 150
BpmI	CTGGAG	1 cut(s)	63
Bpu10I	CCTNAGC	1 cut(s)	1212
BpuEI	CTTGAG	1 cut(s)	279
BsaAI	YACGTR	1 cut(s)	86
BsaJI	CCNNGG	1 cut(s)	91
BsaWI	WCCGGW	1 cut(s)	480
BsaXI	ACNNNNNCTCC	4 cut(s)	235, 265, 528, 558
Bsc4I	CCNNNNNNNGG	3 cut(s)	48, 716, 938
Bse1I	ACTGG	4 cut(s)	80, 374, 844, 891
BseDI	CCNNGG	1 cut(s)	91
BseGI	GGATG	2 cut(s)	514, 1047
BseLI	CCNNNNNNNGG	3 cut(s)	48, 716, 938
BseMII	CTCAG	4 cut(s)	303, 624, 918, 1226
BseNI	ACTGG	4 cut(s)	80, 374, 844, 891
BseRI	GAGGAG	5 cut(s)	90, 237, 240, 243, 499
BseXI	GCAGC	2 cut(s)	748, 1083
BshFI	GGCC	2 cut(s)	555, 946
BsiHKAI	GWGCWC	1 cut(s)	295
BsiSI	CCGG	2 cut(s)	481, 1099
BslFI	GGGAC	2 cut(s)	154, 661
BslI	CCNNNNNNNGG	3 cut(s)	48, 716, 938
BsmAI	GTCTC	3 cut(s)	225, 620, 682
BsmFI	GGGAC	2 cut(s)	154, 661
BsmI	GAATGC	1 cut(s)	202
BsnI	GGCC	2 cut(s)	555, 946
Bsp1286I	GDGCHC	3 cut(s)	116, 295, 611
Bsp143I	GATC	9 cut(s)	95, 345, 446, 472, 497, 683, 773, 1057, 1162
Bsp19I	CCATGG	1 cut(s)	91
BspACI	CCGC	2 cut(s)	271, 964
BspANI	GGCC	2 cut(s)	555, 946
BspCNI	CTCAG	4 cut(s)	304, 623, 919, 1225
BspLI	GGNNCC	3 cut(s)	113, 170, 857
BspMAI	CTGCAG	2 cut(s)	766, 1073
BspPI	GGATC	4 cut(s)	103, 353, 1065, 1170
BspQI	GCTCTTC	1 cut(s)	283
BsrI	ACTGG	4 cut(s)	80, 374, 844, 891
BssECI	CCNNGG	1 cut(s)	91
BssMI	GATC	9 cut(s)	95, 345, 446, 472, 497, 683, 773, 1057, 1162
BssSI	CACGAG	1 cut(s)	951
BssT1I	CCWWGG	1 cut(s)	91
Bst2BI	CACGAG	1 cut(s)	951
Bst4CI	ACNGT	3 cut(s)	282, 662, 711
Bst6I	CTCTTC	3 cut(s)	119, 283, 298
BstAPI	GCANNNNNTGC	1 cut(s)	828
BstBAI	YACGTR	1 cut(s)	86
BstC8I	GCNNGC	3 cut(s)	231, 933, 1076
BstDEI	CTNAG	4 cut(s)	312, 610, 927, 1212
BstDSI	CCRYGG	1 cut(s)	91
BstF5I	GGATG	2 cut(s)	514, 1047
BstKTI	GATC	9 cut(s)	98, 348, 449, 475, 500, 686, 776, 1060, 1165
BstMAI	GTCTC	3 cut(s)	225, 620, 682
BstMBI	GATC	9 cut(s)	95, 345, 446, 472, 497, 683, 773, 1057, 1162
BstMWI	GCNNNNNNNGC	1 cut(s)	828
BstNSI	RCATGY	5 cut(s)	233, 458, 695, 831, 1085
BstSFI	CTRYAG	2 cut(s)	762, 1069
BstV1I	GCAGC	2 cut(s)	748, 1083
BstV2I	GAAGAC	1 cut(s)	669
BstX2I	RGATCY	4 cut(s)	95, 497, 773, 1162
BstYI	RGATCY	4 cut(s)	95, 497, 773, 1162
BsuRI	GGCC	2 cut(s)	555, 946
BtgI	CCRYGG	1 cut(s)	91
BtgZI	GCGATG	1 cut(s)	986
BtsCI	GGATG	2 cut(s)	514, 1047
BtsIMutI	CAGTG	2 cut(s)	381, 837
Cac8I	GCNNGC	3 cut(s)	231, 933, 1076
Cfr13I	GGNCC	3 cut(s)	168, 553, 856
Csp6I	GTAC	2 cut(s)	83, 1128
CviQI	GTAC	2 cut(s)	83, 1128
DdeI	CTNAG	4 cut(s)	312, 610, 927, 1212
DpnI	GATC	9 cut(s)	97, 347, 448, 474, 499, 685, 775, 1059, 1164
DpnII	GATC	9 cut(s)	95, 345, 446, 472, 497, 683, 773, 1057, 1162
DraIII	CACNNNGTG	1 cut(s)	953
EaeI	YGGCCR	1 cut(s)	944
Eam1104I	CTCTTC	3 cut(s)	119, 283, 298
EarI	CTCTTC	3 cut(s)	119, 283, 298
Ecl136II	GAGCTC	1 cut(s)	293
Eco130I	CCWWGG	1 cut(s)	91
Eco24I	GRGCYC	3 cut(s)	116, 295, 611
Eco47I	GGWCC	2 cut(s)	168, 856
Eco53kI	GAGCTC	1 cut(s)	293
Eco57I	CTGAAG	1 cut(s)	651
EcoICRI	GAGCTC	1 cut(s)	293
EcoO109I	RGGNCCY	1 cut(s)	168
EcoT14I	CCWWGG	1 cut(s)	91
EcoT38I	GRGCYC	3 cut(s)	116, 295, 611
ErhI	CCWWGG	1 cut(s)	91
FalI	AAGNNNNNCTT	2 cut(s)	100, 132
FaqI	GGGAC	2 cut(s)	154, 661
FauI	CCCGC	1 cut(s)	278
FblI	GTMKAC	1 cut(s)	701
Fnu4HI	GCNGC	3 cut(s)	762, 965, 1072
FokI	GGATG	2 cut(s)	501, 1034
FriOI	GRGCYC	3 cut(s)	116, 295, 611
Fsp4HI	GCNGC	3 cut(s)	762, 965, 1072
FspBI	CTAG	1 cut(s)	105
GluI	GCNGC	3 cut(s)	762, 965, 1072
GsuI	CTGGAG	1 cut(s)	63
HaeIII	GGCC	2 cut(s)	555, 946
HapII	CCGG	2 cut(s)	481, 1099
HincII	GTYRAC	1 cut(s)	789
HindII	GTYRAC	1 cut(s)	789
HinfI	GANTC	4 cut(s)	74, 127, 370, 698
HpaII	CCGG	2 cut(s)	481, 1099
HphI	GGTGA	6 cut(s)	141, 498, 699, 901, 995, 1052
Hpy166II	GTNNAC	3 cut(s)	702, 789, 986
Hpy188I	TCNGA	4 cut(s)	73, 472, 613, 860
Hpy188III	TCNNGA	6 cut(s)	135, 444, 518, 681, 687, 1024
Hpy8I	GTNNAC	3 cut(s)	702, 789, 986
HpyAV	CCTTC	8 cut(s)	12, 102, 159, 273, 411, 626, 932, 1029
HpyCH4III	ACNGT	3 cut(s)	282, 662, 711
HpyCH4IV	ACGT	2 cut(s)	85, 543
HpyCH4V	TGCA	6 cut(s)	233, 595, 764, 1071, 1202, 1285
HpyF10VI	GCNNNNNNNGC	1 cut(s)	828
HpyF3I	CTNAG	4 cut(s)	312, 610, 927, 1212
HpySE526I	ACGT	2 cut(s)	85, 543
Kzo9I	GATC	9 cut(s)	95, 345, 446, 472, 497, 683, 773, 1057, 1162
LguI	GCTCTTC	1 cut(s)	283
LmnI	GCTCC	2 cut(s)	111, 1114
Lsp1109I	GCAGC	2 cut(s)	748, 1083
LweI	GCATC	1 cut(s)	831
MaeI	CTAG	1 cut(s)	105
MaeII	ACGT	2 cut(s)	85, 543
MaeIII	GTNAC	2 cut(s)	86, 1013
MalI	GATC	9 cut(s)	97, 347, 448, 474, 499, 685, 775, 1059, 1164
MboI	GATC	9 cut(s)	95, 345, 446, 472, 497, 683, 773, 1057, 1162
MboII	GAAGA	7 cut(s)	27, 136, 300, 315, 432, 669, 739
MfeI	CAATTG	2 cut(s)	407, 1203
MflI	RGATCY	4 cut(s)	95, 497, 773, 1162
MhlI	GDGCHC	3 cut(s)	116, 295, 611
MluCI	AATT	6 cut(s)	407, 546, 879, 1094, 1203, 1250
MlyI	GAGTC	3 cut(s)	136, 379, 707
MroXI	GAANNNNTTC	1 cut(s)	847
MseI	TTAA	4 cut(s)	284, 978, 993, 1248
MslI	CAYNNNNRTG	1 cut(s)	519
MspI	CCGG	2 cut(s)	481, 1099
MunI	CAATTG	2 cut(s)	407, 1203
Mva1269I	GAATGC	1 cut(s)	202
MwoI	GCNNNNNNNGC	1 cut(s)	828
NcoI	CCATGG	1 cut(s)	91
NdeII	GATC	9 cut(s)	95, 345, 446, 472, 497, 683, 773, 1057, 1162
NlaIV	GGNNCC	3 cut(s)	113, 170, 857
NmeAIII	GCCGAG	1 cut(s)	1292
NmuCI	GTSAC	1 cut(s)	86
NspI	RCATGY	5 cut(s)	233, 458, 695, 831, 1085
PaeI	GCATGC	1 cut(s)	233
PciI	ACATGT	1 cut(s)	691
PciSI	GCTCTTC	1 cut(s)	283
PcsI	WCGNNNNNNNCGW	2 cut(s)	949, 1061
PctI	GAATGC	1 cut(s)	202
PdmI	GAANNNNTTC	1 cut(s)	847
PfeI	GAWTC	1 cut(s)	74
PkrI	GCNGC	3 cut(s)	763, 966, 1073
PleI	GAGTC	3 cut(s)	135, 378, 706
PpsI	GAGTC	3 cut(s)	135, 378, 706
Ppu21I	YACGTR	1 cut(s)	86
PpuMI	RGGWCCY	1 cut(s)	168
PscI	ACATGT	1 cut(s)	691
Psp124BI	GAGCTC	1 cut(s)	295
Psp5II	RGGWCCY	1 cut(s)	168
PspN4I	GGNNCC	3 cut(s)	113, 170, 857
PspPI	GGNCC	3 cut(s)	168, 553, 856
PspPPI	RGGWCCY	1 cut(s)	168
PstI	CTGCAG	2 cut(s)	766, 1073
PsuI	RGATCY	4 cut(s)	95, 497, 773, 1162
RsaI	GTAC	2 cut(s)	84, 1129
RsaNI	GTAC	2 cut(s)	83, 1128
RseI	CAYNNNNRTG	1 cut(s)	519
SacI	GAGCTC	1 cut(s)	295
SapI	GCTCTTC	1 cut(s)	283
SaqAI	TTAA	4 cut(s)	284, 978, 993, 1248
SatI	GCNGC	3 cut(s)	762, 965, 1072
Sau3AI	GATC	9 cut(s)	95, 345, 446, 472, 497, 683, 773, 1057, 1162
Sau96I	GGNCC	3 cut(s)	168, 553, 856
SchI	GAGTC	3 cut(s)	136, 379, 707
SduI	GDGCHC	3 cut(s)	116, 295, 611
SfaNI	GCATC	1 cut(s)	831
SfcI	CTRYAG	2 cut(s)	762, 1069
SinI	GGWCC	2 cut(s)	168, 856
SmiMI	CAYNNNNRTG	1 cut(s)	519
SmlI	CTYRAG	1 cut(s)	294
SmoI	CTYRAG	1 cut(s)	294
SphI	GCATGC	1 cut(s)	233
Sse9I	AATT	6 cut(s)	407, 546, 879, 1094, 1203, 1250
SsiI	CCGC	2 cut(s)	271, 964
SspMI	CTAG	1 cut(s)	105
SstI	GAGCTC	1 cut(s)	295
StyI	CCWWGG	1 cut(s)	91
TaaI	ACNGT	3 cut(s)	282, 662, 711
TaiI	ACGT	2 cut(s)	88, 546
TaqI	TCGA	5 cut(s)	136, 157, 475, 686, 754
TasI	AATT	6 cut(s)	407, 546, 879, 1094, 1203, 1250
TauI	GCSGC	1 cut(s)	967
TfiI	GAWTC	1 cut(s)	74
Tru1I	TTAA	4 cut(s)	284, 978, 993, 1248
Tru9I	TTAA	4 cut(s)	284, 978, 993, 1248
TscAI	CASTG	2 cut(s)	381, 844
TseFI	GTSAC	1 cut(s)	86
TseI	GCWGC	2 cut(s)	761, 1071
Tsp45I	GTSAC	1 cut(s)	86
TspDTI	ATGAA	5 cut(s)	339, 537, 573, 1209, 1239
TspGWI	ACGGA	1 cut(s)	1070
TspRI	CASTG	2 cut(s)	381, 844
VpaK11BI	GGWCC	2 cut(s)	168, 856
XapI	RAATTY	1 cut(s)	1250
XceI	RCATGY	5 cut(s)	233, 458, 695, 831, 1085
XmiI	GTMKAC	1 cut(s)	701
XmnI	GAANNNNTTC	1 cut(s)	847
XspI	CTAG	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.