Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002746

Physical Location & Seq

Genomic Coordinates Forward (+)

15743741 .. 15745570

Gene Structure 1830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0169400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGAAGATGGGAGTTTCTACATTATTTGCTCTCCTTGTTCTCACATTGGAGTTGTTCATGAGTATTAATGTATCCGCTGCTAAACCAGTCAAAGCAACTGCACAGGTGCCTGCTGAGGCTCTTTTGTCTTTCAGTCACTACATGAAAACTTGTCCACAAGCAGAGGGCATCATTCAGCAAAAAGTCGTAGACTGGCTCGAGAAGGATTTCACTTTGGCTGCTAGCATCATCCGCTTACACTTCCATGATTGTGTTGTGAGGGGTTGCGATGCATCAATTTTGCTTAACCATCGGGGGAGTGAGAGGAGAGCTTATGCAAGCTATACACTCAGAGGTTTCCAAGTAATCGATGACATCAAGGCGGAGCTTGAGAGGCAGTGCCCTAAAACTGTGTCTTGCGCGGACATTCTCACTGCTGCAACAAGAGATGCCACCATCATGGCCGGAGGTCCGTTTTGGGAAATCCCATTCGGGCGTAGAGATGGGAAGATTTCGATTGCCAGAGAAGCGGATGAGACGGTTCCTCAGGGCCATGAGAATATCACTGCATTGATCCAACTATTTCACGAAAAAGGCTTGAACATGCTTGATTTGGTTGCTCTGTCAGGAGCACACACCATTGGTAGAAGTACTTGCCTTGCCTTCAAGCAAAGGCTTGCAAACTTCAATGGAACCAGAAAGCCTGACCCTTCACTAAATTCTATGTACTTGAACAACTTCTTGAAGAAGAAATGCCAAAAAGACTCGGACTTGGTTTTTCTTGATGCCATAACTCCGAAGACATTTGACATGCAATACTACACGAATCTTCACAAGAAGTTGGGGTTGTTATCCACAGATCAGTTGCTCAAGTCGGATATGAGAACCGGTCCGTTTGTTGATGCATTAGGTTCCCAGCCTTCTCTTTTCGAGAGCCAGTTTGCAGCATCCATGGTGAAGCTTGGAAATGTACAAGTTCTTACAAGACCCAATGAAGGCGAGATCCGAGTGAACTGCAATTTTGTCAATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008283 GO:0009507 GO:0009536 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0019222 GO:0031047 GO:0031050 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0040008 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048519 GO:0048638 GO:0050789 GO:0050793 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

337

Amino Acids

37.38

Weight (kDa)

8.55

Isoelectric Point (pI)

30.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	59 - 296	2e-77	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24410 AT3G20550
fragaria_vesca	FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_6g43590
malus_domestica	MD03G1208700.v1.1 MD06G1125500.v1.1 MD11G1223400.v1.1
prunus_persica	Prupe.4G208000_v2.0.a1
pyrus_communis	pycom06g11580 pycom11g19700
rosa_chinensis	RchiOBHm_Chr2g0160171 RchiOBHm_Chr4g0405041 RchiOBHm_Chr5g0037921
rosa_laevigata	RLG00000008882 RLG00000021201 RLG00000033823
rosa_multiflora	Rmu_sc0001744.1_g000004 Rmu_ssc0000241.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042940 Rroxscaffold_5G00349230
rosa_rugosa	Rorug04G0052500 Rorug05G0169400 Rorug05G0169500 Rorug05G0169600
rosa_samantha	Rh2BG560700 Rh4AG127600 Rh4BG121300 Rh4CG135400 Rh4DG121700 Rh5AG257700 Rh5BG260500 Rh5CG293100
rosa_wichuraiana	Rw2G045270 Rw4G010330 Rw5G023890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	106
AccI	GTMKAC	1 cut(s)	189
AccII	CGCG	1 cut(s)	401
AciI	CCGC	5 cut(s)	75, 232, 362, 401, 509
AclWI	GGATC	2 cut(s)	547, 976
AcoI	YGGCCR	1 cut(s)	441
AcsI	RAATTY	1 cut(s)	697
AfaI	GTAC	3 cut(s)	631, 707, 951
AfiI	CCNNNNNNNGG	1 cut(s)	974
AgeI	ACCGGT	1 cut(s)	866
AgsI	TTSAA	5 cut(s)	580, 646, 667, 712, 724
AluBI	AGCT	4 cut(s)	311, 321, 367, 940
AluI	AGCT	4 cut(s)	311, 321, 367, 940
Alw21I	GWGCWC	1 cut(s)	613
Alw26I	GTCTC	1 cut(s)	509
AlwI	GGATC	2 cut(s)	547, 976
Ama87I	CYCGRG	1 cut(s)	197
AoxI	GGCC	2 cut(s)	441, 529
ApeKI	GCWGC	4 cut(s)	77, 218, 416, 923
ApoI	RAATTY	1 cut(s)	697
AseI	ATTAAT	1 cut(s)	66
AsiGI	ACCGGT	1 cut(s)	866
Asp700I	GAANNNNTTC	2 cut(s)	206, 716
AspLEI	GCGC	1 cut(s)	401
AspS9I	GGNCC	3 cut(s)	449, 529, 869
AsuHPI	GGTGA	1 cut(s)	946
AsuNHI	GCTAGC	1 cut(s)	221
AvaI	CYCGRG	1 cut(s)	197
AvaII	GGWCC	2 cut(s)	449, 869
AxyI	CCTNAGG	1 cut(s)	525
BaeGI	GKGCMC	1 cut(s)	383
BanI	GGYRCC	1 cut(s)	106
BbsI	GAAGAC	1 cut(s)	785
Bbv12I	GWGCWC	1 cut(s)	613
BbvCI	CCTCAGC	1 cut(s)	114
BbvI	GCAGC	4 cut(s)	64, 205, 403, 935
BccI	CCATC	3 cut(s)	297, 443, 476
BcgI	CGANNNNNNTGC	2 cut(s)	975, 1009
BciVI	GTATCC	1 cut(s)	82
BcoDI	GTCTC	1 cut(s)	509
BfaI	CTAG	1 cut(s)	222
BfuI	GTATCC	1 cut(s)	82
BisI	GCNGC	4 cut(s)	78, 219, 417, 924
BlsI	GCNGC	4 cut(s)	79, 220, 418, 925
BmcAI	AGTACT	1 cut(s)	631
Bme18I	GGWCC	2 cut(s)	449, 869
BmeT110I	CYCGRG	1 cut(s)	197
BmgT120I	GGNCC	3 cut(s)	449, 529, 869
BmiI	GGNNCC	4 cut(s)	108, 522, 673, 892
BmsI	GCATC	8 cut(s)	177, 234, 259, 281, 418, 754, 871, 935
BmtI	GCTAGC	1 cut(s)	225
BpiI	GAAGAC	1 cut(s)	785
Bpu10I	CCTNAGC	1 cut(s)	114
BpuEI	CTTGAG	2 cut(s)	389, 833
Bsa29I	ATCGAT	1 cut(s)	348
BsaJI	CCNNGG	1 cut(s)	930
BsaWI	WCCGGW	1 cut(s)	866
Bsc4I	CCNNNNNNNGG	1 cut(s)	974
Bse118I	RCCGGY	1 cut(s)	866
Bse1I	ACTGG	3 cut(s)	86, 197, 916
Bse21I	CCTNAGG	1 cut(s)	525
BseCI	ATCGAT	1 cut(s)	348
BseDI	CCNNGG	1 cut(s)	930
BseGI	GGATG	3 cut(s)	228, 517, 926
BseLI	CCNNNNNNNGG	1 cut(s)	974
BseMII	CTCAG	3 cut(s)	105, 343, 539
BseNI	ACTGG	3 cut(s)	86, 197, 916
BseRI	GAGGAG	1 cut(s)	319
BseSI	GKGCMC	1 cut(s)	383
BseXI	GCAGC	4 cut(s)	64, 205, 403, 935
BseYI	CCCAGC	1 cut(s)	894
BsgI	GTGCAG	1 cut(s)	84
Bsh1236I	CGCG	1 cut(s)	401
BshFI	GGCC	2 cut(s)	443, 531
BshNI	GGYRCC	1 cut(s)	106
BshTI	ACCGGT	1 cut(s)	866
BshVI	ATCGAT	1 cut(s)	348
BsiHKAI	GWGCWC	1 cut(s)	613
BsiHKCI	CYCGRG	1 cut(s)	197
BsiSI	CCGG	2 cut(s)	444, 867
BslI	CCNNNNNNNGG	1 cut(s)	974
BsmAI	GTCTC	1 cut(s)	509
BsmBI	CGTCTC	1 cut(s)	509
BsnI	GGCC	2 cut(s)	443, 531
BsoBI	CYCGRG	1 cut(s)	197
Bsp1286I	GDGCHC	2 cut(s)	383, 613
Bsp1407I	TGTACA	1 cut(s)	949
Bsp143I	GATC	3 cut(s)	552, 838, 981
Bsp19I	CCATGG	1 cut(s)	930
BspACI	CCGC	5 cut(s)	75, 232, 362, 401, 509
BspANI	GGCC	2 cut(s)	443, 531
BspCNI	CTCAG	3 cut(s)	106, 342, 538
BspDI	ATCGAT	1 cut(s)	348
BspFNI	CGCG	1 cut(s)	401
BspHI	TCATGA	1 cut(s)	57
BspLI	GGNNCC	4 cut(s)	108, 522, 673, 892
BspOI	GCTAGC	1 cut(s)	225
BspPI	GGATC	2 cut(s)	547, 976
BspT107I	GGYRCC	1 cut(s)	106
BsrFI	RCCGGY	1 cut(s)	866
BsrGI	TGTACA	1 cut(s)	949
BsrI	ACTGG	3 cut(s)	86, 197, 916
BssAI	RCCGGY	1 cut(s)	866
BssECI	CCNNGG	1 cut(s)	930
BssMI	GATC	3 cut(s)	552, 838, 981
BssT1I	CCWWGG	1 cut(s)	930
Bst4CI	ACNGT	2 cut(s)	391, 520
BstAUI	TGTACA	1 cut(s)	949
BstC8I	GCNNGC	4 cut(s)	111, 223, 319, 657
BstDEI	CTNAG	3 cut(s)	114, 329, 525
BstDSI	CCRYGG	1 cut(s)	930
BstF5I	GGATG	3 cut(s)	228, 517, 926
BstFNI	CGCG	1 cut(s)	401
BstHHI	GCGC	1 cut(s)	401
BstKTI	GATC	3 cut(s)	555, 841, 984
BstMAI	GTCTC	1 cut(s)	509
BstMBI	GATC	3 cut(s)	552, 838, 981
BstMWI	GCNNNNNNNGC	3 cut(s)	231, 373, 506
BstNSI	RCATGY	2 cut(s)	586, 793
BstSLI	GKGCMC	1 cut(s)	383
BstUI	CGCG	1 cut(s)	401
BstV1I	GCAGC	4 cut(s)	64, 205, 403, 935
BstV2I	GAAGAC	1 cut(s)	785
BstX2I	RGATCY	1 cut(s)	981
BstXI	CCANNNNNNTGG	1 cut(s)	439
BstYI	RGATCY	1 cut(s)	981
Bsu15I	ATCGAT	1 cut(s)	348
Bsu36I	CCTNAGG	1 cut(s)	525
BsuI	GTATCC	1 cut(s)	82
BsuRI	GGCC	2 cut(s)	443, 531
BsuTUI	ATCGAT	1 cut(s)	348
BtgI	CCRYGG	1 cut(s)	930
BtgZI	GCGATG	1 cut(s)	282
BtsCI	GGATG	3 cut(s)	228, 517, 926
BtsI	GCAGTG	3 cut(s)	383, 411, 543
BtsIMutI	CAGTG	3 cut(s)	383, 411, 543
Cac8I	GCNNGC	4 cut(s)	111, 223, 319, 657
CciI	TCATGA	1 cut(s)	57
CfoI	GCGC	1 cut(s)	401
Cfr10I	RCCGGY	1 cut(s)	866
Cfr13I	GGNCC	3 cut(s)	449, 529, 869
ClaI	ATCGAT	1 cut(s)	348
CpoI	CGGWCCG	1 cut(s)	869
Csp6I	GTAC	3 cut(s)	630, 706, 950
CspAI	ACCGGT	1 cut(s)	866
CspI	CGGWCCG	1 cut(s)	869
CviAII	CATG	8 cut(s)	58, 142, 245, 439, 533, 583, 790, 931
CviQI	GTAC	3 cut(s)	630, 706, 950
DdeI	CTNAG	3 cut(s)	114, 329, 525
DpnI	GATC	3 cut(s)	554, 840, 983
DpnII	GATC	3 cut(s)	552, 838, 981
EaeI	YGGCCR	1 cut(s)	441
EciI	GGCGGA	1 cut(s)	377
Eco130I	CCWWGG	1 cut(s)	930
Eco47I	GGWCC	2 cut(s)	449, 869
Eco81I	CCTNAGG	1 cut(s)	525
Eco88I	CYCGRG	1 cut(s)	197
EcoT14I	CCWWGG	1 cut(s)	930
EcoT22I	ATGCAT	2 cut(s)	274, 886
ErhI	CCWWGG	1 cut(s)	930
Esp3I	CGTCTC	1 cut(s)	509
FaeI	CATG	8 cut(s)	61, 145, 248, 442, 536, 586, 793, 934
FatI	CATG	8 cut(s)	57, 141, 244, 438, 532, 582, 789, 930
FblI	GTMKAC	1 cut(s)	189
Fnu4HI	GCNGC	4 cut(s)	78, 219, 417, 924
FokI	GGATG	3 cut(s)	215, 524, 913
Fsp4HI	GCNGC	4 cut(s)	78, 219, 417, 924
FspBI	CTAG	1 cut(s)	222
GlaI	GCGC	1 cut(s)	400
GluI	GCNGC	4 cut(s)	78, 219, 417, 924
GsaI	CCCAGC	1 cut(s)	898
HaeIII	GGCC	2 cut(s)	443, 531
HapII	CCGG	2 cut(s)	444, 867
HhaI	GCGC	1 cut(s)	401
Hin1II	CATG	8 cut(s)	61, 145, 248, 442, 536, 586, 793, 934
Hin6I	GCGC	1 cut(s)	399
HinP1I	GCGC	1 cut(s)	399
HindIII	AAGCTT	1 cut(s)	938
HinfI	GANTC	2 cut(s)	743, 805
HpaII	CCGG	2 cut(s)	444, 867
HphI	GGTGA	1 cut(s)	946
Hpy166II	GTNNAC	3 cut(s)	155, 190, 991
Hpy188I	TCNGA	5 cut(s)	332, 748, 777, 856, 986
Hpy188III	TCNNGA	7 cut(s)	58, 199, 566, 606, 721, 761, 910
Hpy8I	GTNNAC	3 cut(s)	155, 190, 991
HpyAV	CCTTC	5 cut(s)	196, 652, 699, 909, 968
HpyCH4III	ACNGT	2 cut(s)	391, 520
HpyF10VI	GCNNNNNNNGC	3 cut(s)	231, 373, 506
HpyF3I	CTNAG	3 cut(s)	114, 329, 525
Hsp92II	CATG	8 cut(s)	61, 145, 248, 442, 536, 586, 793, 934
HspAI	GCGC	1 cut(s)	399
Kzo9I	GATC	3 cut(s)	552, 838, 981
LmnI	GCTCC	2 cut(s)	364, 608
Lsp1109I	GCAGC	4 cut(s)	64, 205, 403, 935
LweI	GCATC	8 cut(s)	177, 234, 259, 281, 418, 754, 871, 935
MaeI	CTAG	1 cut(s)	222
MaeIII	GTNAC	1 cut(s)	134
MalI	GATC	3 cut(s)	554, 840, 983
MboI	GATC	3 cut(s)	552, 838, 981
MboII	GAAGA	6 cut(s)	16, 499, 736, 739, 790, 800
MflI	RGATCY	1 cut(s)	981
MhlI	GDGCHC	2 cut(s)	383, 613
MluCI	AATT	3 cut(s)	276, 697, 997
MlyI	GAGTC	1 cut(s)	737
MmeI	TCCRAC	2 cut(s)	580, 834
MnlI	CCTC	8 cut(s)	109, 157, 252, 297, 326, 366, 440, 534
Mph1103I	ATGCAT	2 cut(s)	274, 886
MroXI	GAANNNNTTC	2 cut(s)	206, 716
MseI	TTAA	3 cut(s)	66, 285, 1012
MslI	CAYNNNNRTG	3 cut(s)	243, 249, 437
MspA1I	CMGCKG	1 cut(s)	77
MspI	CCGG	2 cut(s)	444, 867
MvnI	CGCG	1 cut(s)	401
MwoI	GCNNNNNNNGC	3 cut(s)	231, 373, 506
NcoI	CCATGG	1 cut(s)	930
NdeII	GATC	3 cut(s)	552, 838, 981
NheI	GCTAGC	1 cut(s)	221
NlaIII	CATG	8 cut(s)	61, 145, 248, 442, 536, 586, 793, 934
NlaIV	GGNNCC	4 cut(s)	108, 522, 673, 892
NmuCI	GTSAC	1 cut(s)	134
NsiI	ATGCAT	2 cut(s)	274, 886
NspI	RCATGY	2 cut(s)	586, 793
PaeR7I	CTCGAG	1 cut(s)	197
PagI	TCATGA	1 cut(s)	57
PdmI	GAANNNNTTC	2 cut(s)	206, 716
PfeI	GAWTC	1 cut(s)	805
PinAI	ACCGGT	1 cut(s)	866
PkrI	GCNGC	4 cut(s)	79, 220, 418, 925
PleI	GAGTC	1 cut(s)	737
PpsI	GAGTC	1 cut(s)	737
PshBI	ATTAAT	1 cut(s)	66
PspFI	CCCAGC	1 cut(s)	894
PspN4I	GGNNCC	4 cut(s)	108, 522, 673, 892
PspPI	GGNCC	3 cut(s)	449, 529, 869
PsuI	RGATCY	1 cut(s)	981
RsaI	GTAC	3 cut(s)	631, 707, 951
RsaNI	GTAC	3 cut(s)	630, 706, 950
RseI	CAYNNNNRTG	3 cut(s)	243, 249, 437
Rsr2I	CGGWCCG	1 cut(s)	869
RsrII	CGGWCCG	1 cut(s)	869
SaqAI	TTAA	3 cut(s)	66, 285, 1012
SatI	GCNGC	4 cut(s)	78, 219, 417, 924
Sau3AI	GATC	3 cut(s)	552, 838, 981
Sau96I	GGNCC	3 cut(s)	449, 529, 869
ScaI	AGTACT	1 cut(s)	631
SchI	GAGTC	1 cut(s)	737
SduI	GDGCHC	2 cut(s)	383, 613
SetI	ASST	8 cut(s)	108, 313, 323, 337, 369, 451, 892, 942
SfaNI	GCATC	8 cut(s)	177, 234, 259, 281, 418, 754, 871, 935
Sfr274I	CTCGAG	1 cut(s)	197
SinI	GGWCC	2 cut(s)	449, 869
SlaI	CTCGAG	1 cut(s)	197
SmiMI	CAYNNNNRTG	3 cut(s)	243, 249, 437
SmlI	CTYRAG	3 cut(s)	197, 368, 848
SmoI	CTYRAG	3 cut(s)	197, 368, 848
Sse9I	AATT	3 cut(s)	276, 697, 997
SsiI	CCGC	5 cut(s)	75, 232, 362, 401, 509
SspMI	CTAG	1 cut(s)	222
StyI	CCWWGG	1 cut(s)	930
TaaI	ACNGT	2 cut(s)	391, 520
TaqI	TCGA	4 cut(s)	198, 348, 494, 909
TasI	AATT	3 cut(s)	276, 697, 997
TatI	WGTACW	3 cut(s)	629, 705, 949
TfiI	GAWTC	1 cut(s)	805
Tru1I	TTAA	3 cut(s)	66, 285, 1012
Tru9I	TTAA	3 cut(s)	66, 285, 1012
TscAI	CASTG	3 cut(s)	383, 418, 550
TseFI	GTSAC	1 cut(s)	134
TseI	GCWGC	4 cut(s)	77, 218, 416, 923
Tsp45I	GTSAC	1 cut(s)	134
TspDTI	ATGAA	4 cut(s)	17, 46, 158, 987
TspGWI	ACGGA	2 cut(s)	441, 861
TspRI	CASTG	3 cut(s)	383, 418, 550
VpaK11BI	GGWCC	2 cut(s)	449, 869
VspI	ATTAAT	1 cut(s)	66
XapI	RAATTY	1 cut(s)	697
XceI	RCATGY	2 cut(s)	586, 793
XhoI	CTCGAG	1 cut(s)	197
XmiI	GTMKAC	1 cut(s)	189
XmnI	GAANNNNTTC	2 cut(s)	206, 716
XspI	CTAG	1 cut(s)	222
ZrmI	AGTACT	1 cut(s)	631
Zsp2I	ATGCAT	2 cut(s)	274, 886

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.