Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002746

Physical Location & Seq

Genomic Coordinates Reverse (-)

77194451 .. 77194756

Gene Structure 306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG560700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGATGAGGACTGTTGAGGAGGCAAAAGAAAAGCAGAAACCATCGTTTGAGCTATCTGGAAATCTTGATGCAAAAACCAATAGGTTCAAAGGTGCAACACTATTATACTTGAAGCCAGCAGAAGGACGACAGCCTCATGTAAAATGGCGGCTTTATGTTTTCAAGGGTGGTGAAGATTTTAACAAACTCATTAAGATAGAGATGTTACCTTTTCGGAAGGGGAAGAAAGGTGGCATACGTCCCTACAGATCACCCCTCTTGCAGCAAGCAACATATCATTATACAATTCCAGCGAGTAGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008283 GO:0009507 GO:0009536 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0019222 GO:0031047 GO:0031050 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0040008 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048519 GO:0048638 GO:0050789 GO:0050793 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

101

Amino Acids

11.78

Weight (kDa)

10.28

Isoelectric Point (pI)

47.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24410 AT3G20550
fragaria_vesca	FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_3g22101 FvH4_6g43590
malus_domestica	MD03G1208700.v1.1 MD06G1125500.v1.1 MD11G1223400.v1.1
prunus_persica	Prupe.4G208000_v2.0.a1
pyrus_communis	pycom06g11580 pycom11g19700
rosa_chinensis	RchiOBHm_Chr2g0160171 RchiOBHm_Chr4g0405041 RchiOBHm_Chr5g0037921
rosa_laevigata	RLG00000008882 RLG00000021201 RLG00000033823
rosa_multiflora	Rmu_sc0001744.1_g000004 Rmu_ssc0000241.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042940 Rroxscaffold_5G00349230
rosa_rugosa	Rorug04G0052500 Rorug05G0169400 Rorug05G0169500 Rorug05G0169600
rosa_samantha	Rh2BG560700 Rh4AG127600 Rh4BG121300 Rh4CG135400 Rh4DG121700 Rh5AG257700 Rh5BG260500 Rh5CG293100
rosa_wichuraiana	Rw2G045270 Rw4G010330 Rw5G023890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	148
AfiI	CCNNNNNNNGG	1 cut(s)	122
AgsI	TTSAA	3 cut(s)	88, 112, 163
AluBI	AGCT	1 cut(s)	52
AluI	AGCT	1 cut(s)	52
ApeKI	GCWGC	1 cut(s)	262
AsuHPI	GGTGA	2 cut(s)	182, 243
BbvI	GCAGC	1 cut(s)	274
BccI	CCATC	1 cut(s)	49
BfmI	CTRYAG	1 cut(s)	244
BisI	GCNGC	2 cut(s)	149, 263
BlsI	GCNGC	2 cut(s)	150, 264
BmsI	GCATC	1 cut(s)	58
Bsc4I	CCNNNNNNNGG	1 cut(s)	122
BseLI	CCNNNNNNNGG	1 cut(s)	122
BseRI	GAGGAG	1 cut(s)	32
BseXI	GCAGC	1 cut(s)	274
BslFI	GGGAC	1 cut(s)	225
BslI	CCNNNNNNNGG	1 cut(s)	122
BsmFI	GGGAC	1 cut(s)	225
Bsp143I	GATC	1 cut(s)	248
BspACI	CCGC	1 cut(s)	148
BssMI	GATC	1 cut(s)	248
Bst4CI	ACNGT	1 cut(s)	13
BstC8I	GCNNGC	2 cut(s)	117, 267
BstKTI	GATC	1 cut(s)	251
BstMBI	GATC	1 cut(s)	248
BstSFI	CTRYAG	1 cut(s)	244
BstV1I	GCAGC	1 cut(s)	274
Cac8I	GCNNGC	2 cut(s)	117, 267
CviAII	CATG	1 cut(s)	137
CviJI	RGCY	4 cut(s)	52, 115, 133, 151
CviKI_1	RGCY	4 cut(s)	52, 115, 133, 151
DpnI	GATC	1 cut(s)	250
DpnII	GATC	1 cut(s)	248
FaeI	CATG	1 cut(s)	140
FaiI	YATR	6 cut(s)	106, 138, 156, 236, 274, 282
FaqI	GGGAC	1 cut(s)	225
FatI	CATG	1 cut(s)	136
Fnu4HI	GCNGC	2 cut(s)	149, 263
Fsp4HI	GCNGC	2 cut(s)	149, 263
GluI	GCNGC	2 cut(s)	149, 263
Hin1II	CATG	1 cut(s)	140
HphI	GGTGA	2 cut(s)	182, 243
Hpy188I	TCNGA	1 cut(s)	216
Hpy188III	TCNNGA	2 cut(s)	57, 65
HpyAV	CCTTC	2 cut(s)	116, 211
HpyCH4III	ACNGT	1 cut(s)	13
HpyCH4IV	ACGT	1 cut(s)	238
HpyCH4V	TGCA	3 cut(s)	71, 95, 262
HpySE526I	ACGT	1 cut(s)	238
Hsp92II	CATG	1 cut(s)	140
Kzo9I	GATC	1 cut(s)	248
LpnPI	CCDG	2 cut(s)	42, 129
Lsp1109I	GCAGC	1 cut(s)	274
LweI	GCATC	1 cut(s)	58
MaeII	ACGT	1 cut(s)	238
MaeIII	GTNAC	1 cut(s)	204
MalI	GATC	1 cut(s)	250
MboI	GATC	1 cut(s)	248
MboII	GAAGA	2 cut(s)	185, 235
MluCI	AATT	1 cut(s)	285
MnlI	CCTC	4 cut(s)	10, 13, 144, 266
MseI	TTAA	2 cut(s)	180, 192
NdeII	GATC	1 cut(s)	248
NlaIII	CATG	1 cut(s)	140
PkrI	GCNGC	2 cut(s)	150, 264
SaqAI	TTAA	2 cut(s)	180, 192
SatI	GCNGC	2 cut(s)	149, 263
Sau3AI	GATC	1 cut(s)	248
SetI	ASST	6 cut(s)	54, 86, 94, 211, 232, 241
SfaNI	GCATC	1 cut(s)	58
SfcI	CTRYAG	1 cut(s)	244
SgeI	CNNG	9 cut(s)	69, 77, 121, 128, 149, 175, 271, 278, 302
Sse9I	AATT	1 cut(s)	285
SsiI	CCGC	1 cut(s)	148
TaaI	ACNGT	1 cut(s)	13
TaiI	ACGT	1 cut(s)	241
TasI	AATT	1 cut(s)	285
TauI	GCSGC	1 cut(s)	151
Tru1I	TTAA	2 cut(s)	180, 192
Tru9I	TTAA	2 cut(s)	180, 192
TseI	GCWGC	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.