AT2G27340

N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0001436
Physical Location & Seq
Forward (+)
11696595 .. 11699224
2630 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G27340.5

Sequence Viewer

Length: 537 bp
ATGGGAAGCATTAGGGACCAAGAGCTGCATCGGGCATGTGCGGTGCTCAAGGTTCCGCTTCAACAGTTAAAGATTCTGGACCATCCAAATTTGCAGGATGGTTTTGGGCAATTATGGAGCCACGATTTGCTAACAGAGATCATCGAAGAAGAAGTCACTAATCACTATATCCACACAATAATAACATTCGATAACTATGGTGTTTGGGGTCATTGCAATCACCGAGATGTGCATCGTGGAGTATTAAAGTTCTTGCAGACTAATTCAGGAAGAAATGTCAAAGCTTGGGAACTTGTAAGCCTTAATATCTTTCGCAAGTACTGTGGACCTGTCGACATTTGGCTGTCTATTTTATCCGCCAAAAGACATCCGAGTAAGGTAATCATCATAAACAAGCAGCCTTGGAAAAGCTTCAAAGCAATGGCACAACATTTAAGCCAGTGGGTTTGGTTTCGGAAGCTTTTTGTTTTGTTTTCAAGCTATACATATGTGAATACACTTGATAGAATCAACCCTGAGTCAAACGAGCTCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00563 ko01100 map00563 map01100
Pfam Domains
Protein Families
PIG-L

Protein Analysis

178

Amino Acids

20.9

Weight (kDa)

9.01

Isoelectric Point (pI)

44.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PIG-L PF02585 1 - 123 3.8e-23 GlcNAc-PI de-N-acetylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 333
AciI CCGC 3 cut(s) 41, 56, 357
AcsI RAATTY 1 cut(s) 88
AfaI GTAC 1 cut(s) 320
AgsI TTSAA 3 cut(s) 62, 415, 477
AluBI AGCT 6 cut(s) 25, 284, 411, 460, 480, 529
AluI AGCT 6 cut(s) 25, 284, 411, 460, 480, 529
Alw21I GWGCWC 2 cut(s) 48, 531
ApeKI GCWGC 2 cut(s) 25, 397
ApoI RAATTY 1 cut(s) 88
ArsI GACNNNNNNTTYG 2 cut(s) 138, 170
Asp700I GAANNNNTTC 1 cut(s) 410
AspS9I GGNCC 3 cut(s) 16, 79, 326
AsuHPI GGTGA 1 cut(s) 212
AvaII GGWCC 3 cut(s) 16, 79, 326
BanII GRGCYC 1 cut(s) 531
Bbv12I GWGCWC 2 cut(s) 48, 531
BbvI GCAGC 2 cut(s) 12, 409
BccI CCATC 2 cut(s) 90, 92
BisI GCNGC 2 cut(s) 26, 398
BlsI GCNGC 2 cut(s) 27, 399
BmcAI AGTACT 1 cut(s) 320
Bme18I GGWCC 3 cut(s) 16, 79, 326
BmgT120I GGNCC 3 cut(s) 16, 79, 326
BmiI GGNNCC 3 cut(s) 17, 54, 119
BmsI GCATC 2 cut(s) 37, 241
BpuEI CTTGAG 1 cut(s) 32
BsaBI GATNNNNATC 1 cut(s) 231
BsaJI CCNNGG 1 cut(s) 401
Bse1I ACTGG 1 cut(s) 439
Bse3DI GCAATG 2 cut(s) 211, 426
Bse8I GATNNNNATC 1 cut(s) 231
BseDI CCNNGG 1 cut(s) 401
BseGI GGATG 3 cut(s) 82, 103, 367
BseJI GATNNNNATC 1 cut(s) 231
BseMI GCAATG 2 cut(s) 211, 426
BseMII CTCAG 1 cut(s) 507
BseNI ACTGG 1 cut(s) 439
BseXI GCAGC 2 cut(s) 12, 409
BsiHKAI GWGCWC 2 cut(s) 48, 531
BslFI GGGAC 1 cut(s) 29
BsmFI GGGAC 1 cut(s) 29
Bsp1286I GDGCHC 2 cut(s) 48, 531
Bsp143I GATC 1 cut(s) 138
BspACI CCGC 3 cut(s) 41, 56, 357
BspCNI CTCAG 1 cut(s) 508
BspLI GGNNCC 3 cut(s) 17, 54, 119
BsrDI GCAATG 2 cut(s) 211, 426
BsrI ACTGG 1 cut(s) 439
BssECI CCNNGG 1 cut(s) 401
BssMI GATC 1 cut(s) 138
BssT1I CCWWGG 1 cut(s) 401
Bst4CI ACNGT 2 cut(s) 66, 323
BstDEI CTNAG 1 cut(s) 516
BstF5I GGATG 3 cut(s) 82, 103, 367
BstKTI GATC 1 cut(s) 141
BstMBI GATC 1 cut(s) 138
BstNSI RCATGY 1 cut(s) 39
BstV1I GCAGC 2 cut(s) 12, 409
BtsCI GGATG 3 cut(s) 82, 103, 367
BtsIMutI CAGTG 1 cut(s) 446
Cfr13I GGNCC 3 cut(s) 16, 79, 326
Csp6I GTAC 1 cut(s) 319
CspCI CAANNNNNGTGG 2 cut(s) 304, 339
CviAII CATG 1 cut(s) 36
CviQI GTAC 1 cut(s) 319
DdeI CTNAG 1 cut(s) 516
DpnI GATC 1 cut(s) 140
DpnII GATC 1 cut(s) 138
EciI GGCGGA 1 cut(s) 346
Ecl136II GAGCTC 1 cut(s) 529
Eco130I CCWWGG 1 cut(s) 401
Eco24I GRGCYC 1 cut(s) 531
Eco47I GGWCC 3 cut(s) 16, 79, 326
Eco53kI GAGCTC 1 cut(s) 529
EcoICRI GAGCTC 1 cut(s) 529
EcoT14I CCWWGG 1 cut(s) 401
EcoT38I GRGCYC 1 cut(s) 531
ErhI CCWWGG 1 cut(s) 401
FaeI CATG 1 cut(s) 39
FaiI YATR 8 cut(s) 37, 115, 168, 198, 389, 483, 487, 489
FaqI GGGAC 1 cut(s) 29
FatI CATG 1 cut(s) 35
FauNDI CATATG 1 cut(s) 487
FblI GTMKAC 1 cut(s) 333
Fnu4HI GCNGC 2 cut(s) 26, 398
FokI GGATG 3 cut(s) 69, 110, 354
FriOI GRGCYC 1 cut(s) 531
Fsp4HI GCNGC 2 cut(s) 26, 398
GluI GCNGC 2 cut(s) 26, 398
Hin1II CATG 1 cut(s) 39
HincII GTYRAC 1 cut(s) 334
HindII GTYRAC 1 cut(s) 334
HindIII AAGCTT 3 cut(s) 282, 409, 458
HinfI GANTC 3 cut(s) 73, 507, 518
HphI GGTGA 1 cut(s) 212
Hpy166II GTNNAC 2 cut(s) 326, 334
Hpy188I TCNGA 2 cut(s) 372, 456
Hpy188III TCNNGA 2 cut(s) 77, 267
Hpy8I GTNNAC 2 cut(s) 326, 334
HpyCH4III ACNGT 2 cut(s) 66, 323
HpyCH4V TGCA 5 cut(s) 28, 94, 216, 232, 256
HpyF3I CTNAG 1 cut(s) 516
Hsp92II CATG 1 cut(s) 39
Kzo9I GATC 1 cut(s) 138
LmnI GCTCC 1 cut(s) 117
LpnPI CCDG 6 cut(s) 62, 80, 252, 342, 452, 528
Lsp1109I GCAGC 2 cut(s) 12, 409
LweI GCATC 2 cut(s) 37, 241
MaeIII GTNAC 1 cut(s) 154
MalI GATC 1 cut(s) 140
MboI GATC 1 cut(s) 138
MboII GAAGA 3 cut(s) 158, 161, 282
MhlI GDGCHC 2 cut(s) 48, 531
MluCI AATT 3 cut(s) 88, 110, 262
MlyI GAGTC 1 cut(s) 527
MroXI GAANNNNTTC 1 cut(s) 410
MseI TTAA 4 cut(s) 68, 245, 303, 434
MslI CAYNNNNRTG 1 cut(s) 225
NdeI CATATG 1 cut(s) 487
NdeII GATC 1 cut(s) 138
NlaIII CATG 1 cut(s) 39
NlaIV GGNNCC 3 cut(s) 17, 54, 119
NmuCI GTSAC 1 cut(s) 154
NspI RCATGY 1 cut(s) 39
PdmI GAANNNNTTC 1 cut(s) 410
PfeI GAWTC 2 cut(s) 73, 507
PkrI GCNGC 2 cut(s) 27, 399
PleI GAGTC 1 cut(s) 526
PpsI GAGTC 1 cut(s) 526
Psp124BI GAGCTC 1 cut(s) 531
PspN4I GGNNCC 3 cut(s) 17, 54, 119
PspPI GGNCC 3 cut(s) 16, 79, 326
RsaI GTAC 1 cut(s) 320
RsaNI GTAC 1 cut(s) 319
RseI CAYNNNNRTG 1 cut(s) 225
SacI GAGCTC 1 cut(s) 531
SalI GTCGAC 1 cut(s) 332
SaqAI TTAA 4 cut(s) 68, 245, 303, 434
SatI GCNGC 2 cut(s) 26, 398
Sau3AI GATC 1 cut(s) 138
Sau96I GGNCC 3 cut(s) 16, 79, 326
ScaI AGTACT 1 cut(s) 320
SchI GAGTC 1 cut(s) 527
SduI GDGCHC 2 cut(s) 48, 531
SetI ASST 9 cut(s) 27, 54, 286, 331, 381, 413, 462, 482, 531
SfaNI GCATC 2 cut(s) 37, 241
SinI GGWCC 3 cut(s) 16, 79, 326
SmiMI CAYNNNNRTG 1 cut(s) 225
SmlI CTYRAG 1 cut(s) 47
SmoI CTYRAG 1 cut(s) 47
Sse9I AATT 3 cut(s) 88, 110, 262
SsiI CCGC 3 cut(s) 41, 56, 357
SstI GAGCTC 1 cut(s) 531
StyI CCWWGG 1 cut(s) 401
TaaI ACNGT 2 cut(s) 66, 323
TaqI TCGA 3 cut(s) 144, 189, 333
TasI AATT 3 cut(s) 88, 110, 262
TatI WGTACW 1 cut(s) 318
TfiI GAWTC 2 cut(s) 73, 507
Tru1I TTAA 4 cut(s) 68, 245, 303, 434
Tru9I TTAA 4 cut(s) 68, 245, 303, 434
TscAI CASTG 1 cut(s) 446
TseFI GTSAC 1 cut(s) 154
TseI GCWGC 2 cut(s) 25, 397
Tsp45I GTSAC 1 cut(s) 154
TspRI CASTG 1 cut(s) 446
VpaK11BI GGWCC 3 cut(s) 16, 79, 326
XapI RAATTY 1 cut(s) 88
XceI RCATGY 1 cut(s) 39
XmiI GTMKAC 1 cut(s) 333
XmnI GAANNNNTTC 1 cut(s) 410
ZrmI AGTACT 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.