Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019458.1

Orthogroup ID

OG0001436

Physical Location & Seq

Genomic Coordinates Reverse (-)

31 .. 779

Gene Structure 749 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019458.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

atggcatggttattgattctctcttctgtgattgtaatatggatagcttctctgttcaaaattctccatggttcatactcaccatctaagggcactttcttgaatgattccaatgatgatgccagtgccaagaagagaaatgtgttgctggttgttgctcacccagatgatgagtccatgttcttcactccaacaataaactacctcacttcgagagggcataatattcacatcttatgcttgtcaattggtaacactctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

PIG-L

Protein Analysis

87

Amino Acids

9.64

Weight (kDa)

6.89

Isoelectric Point (pI)

46.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27340 AT2G27340 AT2G27340 AT2G27340 AT2G27340 AT3G58130 AT3G58130
fragaria_vesca	FvH4_5g18940 FvH4_5g18940 FvH4_5g18940 FvH4_7g18930 FvH4_7g18930 FvH4_7g18930 FvH4_7g18930 FvH4_7g18930 FvH4_7g18930 FvH4_7g18930 FvH4_7g18930 FvH4_7g18930
malus_domestica	MD16G1270300.v1.1
prunus_persica	Prupe.5G069900_v2.0.a1
pyrus_communis	pycom16g23930
rosa_chinensis	RchiOBHm_Chr7g0203331 RchiOBHm_Chr7g0203411 RchiOBHm_Chr7g0204201 RchiOBHm_Chr7g0204241
rosa_laevigata	RLG00000003532 RLG00000003534
rosa_multiflora	Rmu_sc0000571.1_g000008 Rmu_sc0000571.1_g000010 Rmu_sc0001988.1_g000001 Rmu_sc0005723.1_g000004 Rmu_sc0019458.1_g000001
rosa_roxburghii	Rroxscaffold_3G00253860 Rroxscaffold_3G00253870
rosa_rugosa	Rorug07G0075700 Rorug07G0075700 Rorug07G0075900
rosa_samantha	Rh7BG204700 Rh7BG205000 Rh7BG205200 Rh7CG216500 Rh7CG216700 Rh7CG217400 Rh7CG217800 Rh7DG212200 Rh7DG212500 Rh7DG218300 Rh7DG218500
rosa_wichuraiana	Rw7G017890 Rw7G017920 Rw7G017940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	60
AfiI	CCNNNNNNNGG	1 cut(s)	89
AgsI	TTSAA	2 cut(s)	58, 103
AluBI	AGCT	1 cut(s)	47
AluI	AGCT	1 cut(s)	47
ApoI	RAATTY	1 cut(s)	60
AsuHPI	GGTGA	2 cut(s)	72, 152
BaeGI	GKGCMC	1 cut(s)	95
BccI	CCATC	1 cut(s)	91
BmsI	GCATC	1 cut(s)	109
BsaJI	CCNNGG	1 cut(s)	67
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
Bse1I	ACTGG	1 cut(s)	123
BseDI	CCNNGG	1 cut(s)	67
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseNI	ACTGG	1 cut(s)	123
BseSI	GKGCMC	1 cut(s)	95
BslI	CCNNNNNNNGG	1 cut(s)	89
Bsp1286I	GDGCHC	1 cut(s)	95
Bsp19I	CCATGG	1 cut(s)	67
BsrI	ACTGG	1 cut(s)	123
BssECI	CCNNGG	1 cut(s)	67
BssT1I	CCWWGG	1 cut(s)	67
Bst6I	CTCTTC	2 cut(s)	28, 128
BstDEI	CTNAG	1 cut(s)	87
BstDSI	CCRYGG	1 cut(s)	67
BstSLI	GKGCMC	1 cut(s)	95
BtgI	CCRYGG	1 cut(s)	67
BtsIMutI	CAGTG	1 cut(s)	130
CviAII	CATG	3 cut(s)	6, 68, 178
CviJI	RGCY	1 cut(s)	47
CviKI_1	RGCY	1 cut(s)	47
DdeI	CTNAG	1 cut(s)	87
Eam1104I	CTCTTC	2 cut(s)	28, 128
EarI	CTCTTC	2 cut(s)	28, 128
Eco130I	CCWWGG	1 cut(s)	67
EcoT14I	CCWWGG	1 cut(s)	67
ErhI	CCWWGG	1 cut(s)	67
FaeI	CATG	3 cut(s)	9, 71, 181
FaiI	YATR	7 cut(s)	7, 40, 69, 76, 179, 222, 238
FatI	CATG	3 cut(s)	5, 67, 177
Hin1II	CATG	3 cut(s)	9, 71, 181
HinfI	GANTC	3 cut(s)	16, 107, 173
HphI	GGTGA	2 cut(s)	72, 152
Hpy188III	TCNNGA	2 cut(s)	100, 213
HpyF3I	CTNAG	1 cut(s)	87
Hsp92II	CATG	3 cut(s)	9, 71, 181
LpnPI	CCDG	3 cut(s)	134, 136, 177
LweI	GCATC	1 cut(s)	109
MaeIII	GTNAC	1 cut(s)	251
MboII	GAAGA	3 cut(s)	15, 145, 175
MfeI	CAATTG	1 cut(s)	246
MhlI	GDGCHC	1 cut(s)	95
MluCI	AATT	2 cut(s)	60, 246
MlyI	GAGTC	1 cut(s)	182
MmeI	TCCRAC	1 cut(s)	215
MnlI	CCTC	2 cut(s)	209, 215
MslI	CAYNNNNRTG	1 cut(s)	165
MunI	CAATTG	1 cut(s)	246
NcoI	CCATGG	1 cut(s)	67
NlaIII	CATG	3 cut(s)	9, 71, 181
PfeI	GAWTC	2 cut(s)	16, 107
PleI	GAGTC	1 cut(s)	181
PpsI	GAGTC	1 cut(s)	181
RseI	CAYNNNNRTG	1 cut(s)	165
SchI	GAGTC	1 cut(s)	182
SduI	GDGCHC	1 cut(s)	95
SetI	ASST	2 cut(s)	49, 207
SfaNI	GCATC	1 cut(s)	109
SmiMI	CAYNNNNRTG	1 cut(s)	165
Sse9I	AATT	2 cut(s)	60, 246
SspI	AATATT	1 cut(s)	226
StyI	CCWWGG	1 cut(s)	67
TaqI	TCGA	1 cut(s)	212
TasI	AATT	2 cut(s)	60, 246
TfiI	GAWTC	2 cut(s)	16, 107
TscAI	CASTG	1 cut(s)	130
TspDTI	ATGAA	1 cut(s)	63
TspRI	CASTG	1 cut(s)	130
XapI	RAATTY	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.