Rh7DG218300
MADS Family

Agamous-like MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0001436
Physical Location & Seq
Reverse (-)
21119499 .. 21141815
22317 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG218300.1

Sequence Viewer

Length: 525 bp
ATGCTTGTCAATTGTCGCTGCGAGATTGAATGCCGACTGTTGGCACGGCTCAGTGAAATATTTCAACAGGGCAGGCTAATTGCTGAAACAGACATTGCCAGACTCCATTTAAATTCACTCCTGCAAGCAAGCTCAACGAAACAAGTCCAGAAGGCCGGTTTTTTAAGCTACTTTTCTGAAGCTTTTCAAGACACATATTACTATTACAGGAGGTCAAAGCATTTTATGGGGCGAATTGATGATGGGATCATGGGGAGAGTGTCGAAGCTAAGTTCCGCGGTTGGACTGATTGGTGCAAGGCAGAGAACACAGAGGCTACTTGAATATTTAGAAGATCAGTTGGAGGATGACCCTAAGGACGTGGATGTTCTAAAAGATGAACTTGAGAAGCTACAACAGAATCAATTGCGTCTGTTGGGCAATGACTTATCTAGTTTGAGCTTGAAAGAATTGCAGAAACTAGAAAATCAATTAACTGAAGGATTATTTTCAGTGAAGGAGAAAAAGAAGGATAATAATGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003824 GO:0004601 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006082 GO:0006355 GO:0006629 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008300 GO:0009056 GO:0009636 GO:0009685 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009838 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009900 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010033 GO:0010047 GO:0010154 GO:0010227 GO:0010262 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010817 GO:0016042 GO:0016054 GO:0016101 GO:0016103 GO:0016115 GO:0016209 GO:0016491 GO:0016684 GO:0019219 GO:0019222 GO:0019752 GO:0022414 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0042221 GO:0042445 GO:0042447 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044464 GO:0045487 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046395 GO:0046983 GO:0048316 GO:0048367 GO:0048437 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048577 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048587 GO:0048608 GO:0048609 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051254 GO:0051716 GO:0055114 GO:0060255 GO:0060860 GO:0060862 GO:0060867 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0080050 GO:0080090 GO:0090567 GO:0097159 GO:0097237 GO:0098754 GO:0098869 GO:0099402 GO:0140110 GO:1901363 GO:1901575 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1990748 GO:2000026 GO:2000028 GO:2000034 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2000692 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

174

Amino Acids

20.08

Weight (kDa)

6.75

Isoelectric Point (pI)

36.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
K-box PF01486 118 - 170 4.7e-12 K-box region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 278
AciI CCGC 2 cut(s) 276, 278
AclWI GGATC 1 cut(s) 254
AcsI RAATTY 1 cut(s) 112
AcuI CTGAAG 2 cut(s) 198, 498
AfiI CCNNNNNNNGG 1 cut(s) 40
AgsI TTSAA 5 cut(s) 29, 65, 188, 323, 445
AjiI CACGTC 1 cut(s) 361
AluBI AGCT 6 cut(s) 132, 168, 182, 268, 391, 441
AluI AGCT 6 cut(s) 132, 168, 182, 268, 391, 441
AlwI GGATC 1 cut(s) 254
AoxI GGCC 1 cut(s) 153
ApeKI GCWGC 1 cut(s) 18
ApoI RAATTY 1 cut(s) 112
Asp700I GAANNNNTTC 2 cut(s) 60, 183
AxyI CCTNAGG 1 cut(s) 354
BbvI GCAGC 1 cut(s) 5
BccI CCATC 1 cut(s) 236
BceAI ACGGC 1 cut(s) 62
BfaI CTAG 2 cut(s) 432, 461
BisI GCNGC 1 cut(s) 19
BlsI GCNGC 1 cut(s) 20
BmgBI CACGTC 1 cut(s) 361
BpuEI CTTGAG 1 cut(s) 404
BsaJI CCNNGG 1 cut(s) 276
Bsc4I CCNNNNNNNGG 1 cut(s) 40
Bse118I RCCGGY 1 cut(s) 155
Bse21I CCTNAGG 1 cut(s) 354
Bse3DI GCAATG 2 cut(s) 93, 427
BseDI CCNNGG 1 cut(s) 276
BseGI GGATG 2 cut(s) 352, 370
BseLI CCNNNNNNNGG 1 cut(s) 40
BseMI GCAATG 2 cut(s) 93, 427
BseMII CTCAG 1 cut(s) 64
BseXI GCAGC 1 cut(s) 5
Bsh1236I CGCG 1 cut(s) 278
BshFI GGCC 1 cut(s) 155
BsiSI CCGG 1 cut(s) 156
BslI CCNNNNNNNGG 1 cut(s) 40
BsmI GAATGC 1 cut(s) 35
BsnI GGCC 1 cut(s) 155
Bsp143I GATC 2 cut(s) 246, 334
BspACI CCGC 2 cut(s) 276, 278
BspANI GGCC 1 cut(s) 155
BspCNI CTCAG 1 cut(s) 63
BspFNI CGCG 1 cut(s) 278
BspPI GGATC 1 cut(s) 254
BsrDI GCAATG 2 cut(s) 93, 427
BsrFI RCCGGY 1 cut(s) 155
BssAI RCCGGY 1 cut(s) 155
BssECI CCNNGG 1 cut(s) 276
BssMI GATC 2 cut(s) 246, 334
Bst4CI ACNGT 1 cut(s) 39
BstC8I GCNNGC 3 cut(s) 74, 126, 130
BstDEI CTNAG 3 cut(s) 50, 269, 354
BstDSI CCRYGG 1 cut(s) 276
BstF5I GGATG 2 cut(s) 352, 370
BstFNI CGCG 1 cut(s) 278
BstKTI GATC 2 cut(s) 249, 337
BstMBI GATC 2 cut(s) 246, 334
BstUI CGCG 1 cut(s) 278
BstV1I GCAGC 1 cut(s) 5
Bsu36I CCTNAGG 1 cut(s) 354
BsuRI GGCC 1 cut(s) 155
BtgI CCRYGG 1 cut(s) 276
BtrI CACGTC 1 cut(s) 361
BtsCI GGATG 2 cut(s) 352, 370
BtsIMutI CAGTG 2 cut(s) 58, 498
Cac8I GCNNGC 3 cut(s) 74, 126, 130
Cfr10I RCCGGY 1 cut(s) 155
Cfr42I CCGCGG 1 cut(s) 279
CseI GACGC 1 cut(s) 398
CviAII CATG 1 cut(s) 250
DdeI CTNAG 3 cut(s) 50, 269, 354
DpnI GATC 2 cut(s) 248, 336
DpnII GATC 2 cut(s) 246, 334
DraI TTTAAA 1 cut(s) 111
Eco57I CTGAAG 2 cut(s) 198, 498
Eco81I CCTNAGG 1 cut(s) 354
EcoT22I ATGCAT 1 cut(s) 523
FaeI CATG 1 cut(s) 253
FaiI YATR 4 cut(s) 196, 227, 251, 523
FalI AAGNNNNNCTT 2 cut(s) 366, 398
FatI CATG 1 cut(s) 249
Fnu4HI GCNGC 1 cut(s) 19
FokI GGATG 2 cut(s) 359, 377
Fsp4HI GCNGC 1 cut(s) 19
FspBI CTAG 2 cut(s) 432, 461
GluI GCNGC 1 cut(s) 19
HaeIII GGCC 1 cut(s) 155
HapII CCGG 1 cut(s) 156
HgaI GACGC 1 cut(s) 398
Hin1II CATG 1 cut(s) 253
HindIII AAGCTT 1 cut(s) 180
HinfI GANTC 2 cut(s) 102, 400
HpaII CCGG 1 cut(s) 156
Hpy188I TCNGA 1 cut(s) 178
Hpy188III TCNNGA 2 cut(s) 148, 188
HpyAV CCTTC 4 cut(s) 145, 473, 490, 502
HpyCH4III ACNGT 1 cut(s) 39
HpyCH4IV ACGT 1 cut(s) 360
HpyCH4V TGCA 4 cut(s) 124, 296, 454, 521
HpyF3I CTNAG 3 cut(s) 50, 269, 354
HpySE526I ACGT 1 cut(s) 360
Hsp92II CATG 1 cut(s) 253
KspI CCGCGG 1 cut(s) 279
Kzo9I GATC 2 cut(s) 246, 334
LpnPI CCDG 7 cut(s) 53, 58, 112, 134, 161, 169, 193
Lsp1109I GCAGC 1 cut(s) 5
MaeI CTAG 2 cut(s) 432, 461
MaeII ACGT 1 cut(s) 360
MalI GATC 2 cut(s) 248, 336
MboI GATC 2 cut(s) 246, 334
MboII GAAGA 1 cut(s) 344
MfeI CAATTG 2 cut(s) 10, 404
MluCI AATT 7 cut(s) 10, 78, 112, 234, 404, 449, 470
MlyI GAGTC 1 cut(s) 96
MmeI TCCRAC 2 cut(s) 262, 321
MnlI CCTC 3 cut(s) 204, 306, 337
Mph1103I ATGCAT 1 cut(s) 523
MroXI GAANNNNTTC 2 cut(s) 60, 183
MseI TTAA 3 cut(s) 110, 164, 473
MspA1I CMGCKG 1 cut(s) 278
MspI CCGG 1 cut(s) 156
MunI CAATTG 2 cut(s) 10, 404
Mva1269I GAATGC 1 cut(s) 35
MvnI CGCG 1 cut(s) 278
NdeII GATC 2 cut(s) 246, 334
NlaIII CATG 1 cut(s) 253
NsiI ATGCAT 1 cut(s) 523
PctI GAATGC 1 cut(s) 35
PdmI GAANNNNTTC 2 cut(s) 60, 183
PfeI GAWTC 1 cut(s) 400
PkrI GCNGC 1 cut(s) 20
PleI GAGTC 1 cut(s) 96
PpsI GAGTC 1 cut(s) 96
SacII CCGCGG 1 cut(s) 279
SaqAI TTAA 3 cut(s) 110, 164, 473
SatI GCNGC 1 cut(s) 19
Sau3AI GATC 2 cut(s) 246, 334
SchI GAGTC 1 cut(s) 96
SetI ASST 8 cut(s) 134, 170, 184, 215, 270, 363, 393, 443
Sfr303I CCGCGG 1 cut(s) 279
SgrBI CCGCGG 1 cut(s) 279
SmiI ATTTAAAT 1 cut(s) 111
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
Sse9I AATT 7 cut(s) 10, 78, 112, 234, 404, 449, 470
SsiI CCGC 2 cut(s) 276, 278
SspI AATATT 2 cut(s) 60, 326
SspMI CTAG 2 cut(s) 432, 461
SwaI ATTTAAAT 1 cut(s) 111
TaaI ACNGT 1 cut(s) 39
TaiI ACGT 1 cut(s) 363
TaqI TCGA 1 cut(s) 263
TasI AATT 7 cut(s) 10, 78, 112, 234, 404, 449, 470
TfiI GAWTC 1 cut(s) 400
Tru1I TTAA 3 cut(s) 110, 164, 473
Tru9I TTAA 3 cut(s) 110, 164, 473
TscAI CASTG 2 cut(s) 58, 498
TseI GCWGC 1 cut(s) 18
TspDTI ATGAA 1 cut(s) 393
TspRI CASTG 2 cut(s) 58, 498
XapI RAATTY 1 cut(s) 112
XmnI GAANNNNTTC 2 cut(s) 60, 183
XspI CTAG 2 cut(s) 432, 461
Zsp2I ATGCAT 1 cut(s) 523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.