FvH4_7g18930

N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0001436
Physical Location & Seq
Forward (+)
15747690 .. 15755400
7711 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g18930.t5

Sequence Viewer

Length: 786 bp
ATGGGGTGGTTATTGATTATCTCGTTTGTGATTGTGATATGGATAGCTTCTCTGCTCAAAATCCTCCATGGTTCATACTCACCTTCTAAGGGTGCTTTCTTGAATGATTCTAATAATGGTGGCGGTGCCAAGAAGAAAAAAGTGTTGCTGGTTGTTGCCCACCCAGATGACGAGTCTATGTTCTTCACTCCCACAATAAACTACCTCACTTCGAGAGGTCATAATATTCACATCTTATGCTTGTCAGTTGGCGATGCAGATGGTAAAGGAAATACTAGAAAAGATGAGCTCTACAAGGCTTCTGCAATGCTCAAGGTTCCACATCAACAAGTCAAGATTCTGGACCATCCAGATCTTCAGGATGGTTTTGGCAACATGTGGAACCACAATTTAGTGGCGAAGATTGTTGAAGAGGAAGTCATAAGTCATGGCATTAACTTGATACTTACTTTTGATAATTATGGAGTTTCGGGACACTGTAACCACCGTGATGTGCATTATGGTGTAAGGAAGCTTTTAAATGCATCGTCACAGAGGAATATTGAAGCCTGGGAACTTGTCAGTACAAACATATTCCGCAAGTATAGTGGACCAGTGGATATATGGTTGTCCACTATATATTCCATGCAATGCTCAAATGAAATGTTGCATTGCTTGGTAAATGAGCAACCTCGAAAGAGCTTCCGGGCGATGGCACAACATGCAAGCCAATGGGTTTGGTTTCGCAAGCTTTTTGTGGCATTTTCCAGTTGCACCTATGTGAACATGCTTAGAAAGATGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00563 ko01100 map00563 map01100
Pfam Domains
Protein Families
PIG-L

Protein Analysis

262

Amino Acids

29.63

Weight (kDa)

9.13

Isoelectric Point (pI)

38.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PIG-L PF02585 29 - 113 2e-07 GlcNAc-PI de-N-acetylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 125
AciI CCGC 2 cut(s) 123, 577
AcuI CTGAAG 1 cut(s) 341
AfaI GTAC 1 cut(s) 565
AfiI CCNNNNNNNGG 2 cut(s) 89, 691
AflIII ACRYGT 1 cut(s) 375
AgsI TTSAA 3 cut(s) 103, 410, 545
AjnI CCWGG 1 cut(s) 548
AleI CACNNNNGTG 1 cut(s) 758
AluBI AGCT 5 cut(s) 47, 289, 514, 681, 730
AluI AGCT 5 cut(s) 47, 289, 514, 681, 730
Alw21I GWGCWC 1 cut(s) 291
AspS9I GGNCC 2 cut(s) 343, 590
AsuC2I CCSGG 1 cut(s) 686
AsuHPI GGTGA 1 cut(s) 72
AvaII GGWCC 2 cut(s) 343, 590
BanI GGYRCC 1 cut(s) 125
BanII GRGCYC 1 cut(s) 291
Bbv12I GWGCWC 1 cut(s) 291
BccI CCATC 4 cut(s) 254, 354, 356, 685
BciT130I CCWGG 1 cut(s) 550
BcnI CCSGG 1 cut(s) 686
BfaI CTAG 1 cut(s) 276
BglII AGATCT 1 cut(s) 352
Bme1390I CCNGG 2 cut(s) 550, 686
Bme18I GGWCC 2 cut(s) 343, 590
BmgT120I GGNCC 2 cut(s) 343, 590
BmiI GGNNCC 3 cut(s) 127, 318, 383
BmrFI CCNGG 2 cut(s) 550, 686
BmsI GCATC 2 cut(s) 244, 533
BpuEI CTTGAG 1 cut(s) 296
BpuMI CCSGG 1 cut(s) 686
BsaJI CCNNGG 2 cut(s) 67, 549
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 691
Bse1I ACTGG 2 cut(s) 593, 747
Bse3DI GCAATG 3 cut(s) 312, 635, 649
BseBI CCWGG 1 cut(s) 550
BseDI CCNNGG 2 cut(s) 67, 549
BseGI GGATG 2 cut(s) 346, 367
BseLI CCNNNNNNNGG 2 cut(s) 89, 691
BseMI GCAATG 3 cut(s) 312, 635, 649
BseNI ACTGG 2 cut(s) 593, 747
BshNI GGYRCC 1 cut(s) 125
BsiHKAI GWGCWC 1 cut(s) 291
BsiSI CCGG 1 cut(s) 685
BslFI GGGAC 1 cut(s) 486
BslI CCNNNNNNNGG 2 cut(s) 89, 691
BsmFI GGGAC 1 cut(s) 486
Bsp1286I GDGCHC 1 cut(s) 291
Bsp143I GATC 1 cut(s) 352
Bsp19I CCATGG 1 cut(s) 67
BspACI CCGC 2 cut(s) 123, 577
BspLI GGNNCC 3 cut(s) 127, 318, 383
BspT107I GGYRCC 1 cut(s) 125
BsrDI GCAATG 3 cut(s) 312, 635, 649
BsrI ACTGG 2 cut(s) 593, 747
BssECI CCNNGG 2 cut(s) 67, 549
BssMI GATC 1 cut(s) 352
BssT1I CCWWGG 1 cut(s) 67
Bst2UI CCWGG 1 cut(s) 550
Bst4CI ACNGT 2 cut(s) 479, 488
Bst6I CTCTTC 1 cut(s) 405
BstAPI GCANNNNNTGC 1 cut(s) 701
BstC8I GCNNGC 2 cut(s) 706, 728
BstDEI CTNAG 2 cut(s) 87, 770
BstDSI CCRYGG 1 cut(s) 67
BstF5I GGATG 2 cut(s) 346, 367
BstKTI GATC 1 cut(s) 355
BstMBI GATC 1 cut(s) 352
BstMWI GCNNNNNNNGC 1 cut(s) 701
BstNI CCWGG 1 cut(s) 550
BstNSI RCATGY 3 cut(s) 379, 704, 769
BstSCI CCNGG 2 cut(s) 548, 684
BstX2I RGATCY 1 cut(s) 352
BstYI RGATCY 1 cut(s) 352
BtgI CCRYGG 1 cut(s) 67
BtgZI GCGATG 2 cut(s) 267, 704
BtsCI GGATG 2 cut(s) 346, 367
BtsIMutI CAGTG 2 cut(s) 475, 600
Cac8I GCNNGC 2 cut(s) 706, 728
Cfr13I GGNCC 2 cut(s) 343, 590
Csp6I GTAC 1 cut(s) 564
CspCI CAANNNNNGTGG 2 cut(s) 568, 603
CviAII CATG 6 cut(s) 68, 376, 428, 625, 701, 766
CviJI RGCY 8 cut(s) 47, 289, 299, 514, 548, 681, 708, 730
CviKI_1 RGCY 8 cut(s) 47, 289, 299, 514, 548, 681, 708, 730
CviQI GTAC 1 cut(s) 564
DdeI CTNAG 2 cut(s) 87, 770
DpnI GATC 1 cut(s) 354
DpnII GATC 1 cut(s) 352
DraI TTTAAA 1 cut(s) 519
Eam1104I CTCTTC 1 cut(s) 405
EarI CTCTTC 1 cut(s) 405
Ecl136II GAGCTC 1 cut(s) 289
Eco130I CCWWGG 1 cut(s) 67
Eco24I GRGCYC 1 cut(s) 291
Eco47I GGWCC 2 cut(s) 343, 590
Eco53kI GAGCTC 1 cut(s) 289
Eco57I CTGAAG 1 cut(s) 341
EcoICRI GAGCTC 1 cut(s) 289
EcoRII CCWGG 1 cut(s) 548
EcoT14I CCWWGG 1 cut(s) 67
EcoT22I ATGCAT 1 cut(s) 526
EcoT38I GRGCYC 1 cut(s) 291
ErhI CCWWGG 1 cut(s) 67
FaeI CATG 6 cut(s) 71, 379, 431, 628, 704, 769
FaqI GGGAC 1 cut(s) 486
FatI CATG 6 cut(s) 67, 375, 427, 624, 700, 765
FokI GGATG 2 cut(s) 333, 374
FriOI GRGCYC 1 cut(s) 291
FspBI CTAG 1 cut(s) 276
HapII CCGG 1 cut(s) 685
Hin1II CATG 6 cut(s) 71, 379, 431, 628, 704, 769
HindIII AAGCTT 2 cut(s) 512, 728
HinfI GANTC 3 cut(s) 107, 173, 337
HpaII CCGG 1 cut(s) 685
HphI GGTGA 1 cut(s) 72
Hpy166II GTNNAC 3 cut(s) 590, 612, 763
Hpy188III TCNNGA 7 cut(s) 100, 213, 334, 341, 350, 359, 471
Hpy8I GTNNAC 3 cut(s) 590, 612, 763
HpyAV CCTTC 1 cut(s) 93
HpyCH4III ACNGT 2 cut(s) 479, 488
HpyCH4V TGCA 8 cut(s) 257, 305, 496, 524, 628, 649, 704, 753
HpyF10VI GCNNNNNNNGC 1 cut(s) 701
HpyF3I CTNAG 2 cut(s) 87, 770
Hsp92II CATG 6 cut(s) 71, 379, 431, 628, 704, 769
Kzo9I GATC 1 cut(s) 352
LweI GCATC 2 cut(s) 244, 533
MaeI CTAG 1 cut(s) 276
MaeIII GTNAC 2 cut(s) 479, 528
MalI GATC 1 cut(s) 354
MboI GATC 1 cut(s) 352
MboII GAAGA 5 cut(s) 145, 175, 347, 412, 422
MflI RGATCY 1 cut(s) 352
MhlI GDGCHC 1 cut(s) 291
MluCI AATT 2 cut(s) 388, 457
MlyI GAGTC 1 cut(s) 182
MnlI CCTC 6 cut(s) 74, 209, 215, 406, 528, 681
Mph1103I ATGCAT 1 cut(s) 526
MseI TTAA 2 cut(s) 435, 518
MslI CAYNNNNRTG 4 cut(s) 165, 489, 501, 758
MspI CCGG 1 cut(s) 685
MspR9I CCNGG 2 cut(s) 550, 686
MvaI CCWGG 1 cut(s) 550
MwoI GCNNNNNNNGC 1 cut(s) 701
NciI CCSGG 1 cut(s) 686
NcoI CCATGG 1 cut(s) 67
NdeII GATC 1 cut(s) 352
NlaIII CATG 6 cut(s) 71, 379, 431, 628, 704, 769
NlaIV GGNNCC 3 cut(s) 127, 318, 383
NmuCI GTSAC 1 cut(s) 528
NsiI ATGCAT 1 cut(s) 526
NspI RCATGY 3 cut(s) 379, 704, 769
OliI CACNNNNGTG 1 cut(s) 758
PciI ACATGT 1 cut(s) 375
PfeI GAWTC 2 cut(s) 107, 337
PleI GAGTC 1 cut(s) 181
PpsI GAGTC 1 cut(s) 181
PscI ACATGT 1 cut(s) 375
Psp124BI GAGCTC 1 cut(s) 291
Psp6I CCWGG 1 cut(s) 548
PspGI CCWGG 1 cut(s) 548
PspN4I GGNNCC 3 cut(s) 127, 318, 383
PspPI GGNCC 2 cut(s) 343, 590
PsuI RGATCY 1 cut(s) 352
RsaI GTAC 1 cut(s) 565
RsaNI GTAC 1 cut(s) 564
RseI CAYNNNNRTG 4 cut(s) 165, 489, 501, 758
SacI GAGCTC 1 cut(s) 291
SaqAI TTAA 2 cut(s) 435, 518
Sau3AI GATC 1 cut(s) 352
Sau96I GGNCC 2 cut(s) 343, 590
SchI GAGTC 1 cut(s) 182
ScrFI CCNGG 2 cut(s) 550, 686
SduI GDGCHC 1 cut(s) 291
SfaNI GCATC 2 cut(s) 244, 533
SinI GGWCC 2 cut(s) 343, 590
SmiMI CAYNNNNRTG 4 cut(s) 165, 489, 501, 758
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
Sse9I AATT 2 cut(s) 388, 457
SsiI CCGC 2 cut(s) 123, 577
SspI AATATT 2 cut(s) 226, 541
SspMI CTAG 1 cut(s) 276
SstI GAGCTC 1 cut(s) 291
StyD4I CCNGG 2 cut(s) 548, 684
StyI CCWWGG 1 cut(s) 67
TaaI ACNGT 2 cut(s) 479, 488
TaqI TCGA 2 cut(s) 212, 673
TasI AATT 2 cut(s) 388, 457
TatI WGTACW 1 cut(s) 563
TfiI GAWTC 2 cut(s) 107, 337
Tru1I TTAA 2 cut(s) 435, 518
Tru9I TTAA 2 cut(s) 435, 518
TscAI CASTG 2 cut(s) 482, 600
TseFI GTSAC 1 cut(s) 528
Tsp45I GTSAC 1 cut(s) 528
TspDTI ATGAA 2 cut(s) 63, 654
TspRI CASTG 2 cut(s) 482, 600
VpaK11BI GGWCC 2 cut(s) 343, 590
XceI RCATGY 3 cut(s) 379, 704, 769
XcmI CCANNNNNNNNNTGG 1 cut(s) 600
XspI CTAG 1 cut(s) 276
Zsp2I ATGCAT 1 cut(s) 526
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.