Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005723.1

Orthogroup ID

OG0001436

Physical Location & Seq

Genomic Coordinates Reverse (-)

20716 .. 30095

Gene Structure 9380 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005723.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

atgaactcctccaatgcattcaaatcattcaaagaagatgggaattggcaaattcagttgaatgattcggttggtcccaatgttcgttgcgatcatactcttctctttgtttctcgccggcgatttggggtcgcgttttcttctcttgtcgcttcctcttctcctcctgcctcgtcagcgcctgaatctccctttttcgccgtgctgctggatctcacaaccgccgccgtctggattccgttttctctcgtatctcctccgttgagagtttcggtctctccgatttttctgaaactcgcgcctccggtttccggctcaatctcctcctctttcattcctgggaggcatcaggtgcattctagatggcgtggtgatgcaggtggtaaaggaaataccagaaaagaagagctctaccaggcttctgcaaccctcaaggttccacatcaacaagtgaagattctggaccatcaggatcttcgggatgggtttggtaaggtgcggaatcacaagttattggcaaagattattgaaaaggaagttgtaagtcagggcattgacttgataatttcttttgataattatggagtttcgggacactgtaaccatcgtgacgtgcagtttgaagtaaggcttctgcttgcatcgtcacagaggaatgttgaagcctgggaacttgtcagtactaacatatttctcaagtatagtgcaccagtggatatatggtcctccaatttatattctacgcaatgctcaaatgaaatgttgcattgcttggtgatgagcaaccccgaaagagcttcctggcgatggcacaacatgcaagccagtggaattggtggcagtgccaagaagagaaatgtgttgctggttgttgcccacccagatgatgagtccatgtggcagtgccaagaagagaaatgtgctgctgttgcccacccagatgatgagtccatgttcttcactccaacaataaactacctcacttcgagagggcataatattcacatcttatgcttgtcaattggtgatgcagatggtaaaggaaataccagaaaagaagagctctaccaggcttctgcaaccctcaaggttccacatcaacaagtgaagattctggaccatccagatcttcgggatggttttggtaaggtgtggaatcacaatttattggcaaagattattgaagaggaagttgtaagtcagggcattgacttgataattacttttgataattatggagtttggggacactgtaaccatcgtgacgtgcattttggagtaaggtatgttgaacttaattttctagtcgcctccagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

PIG-L

Protein Analysis

439

Amino Acids

49.02

Weight (kDa)

6.85

Isoelectric Point (pI)

44.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27340 AT2G27340 AT2G27340 AT2G27340 AT2G27340 AT3G58130 AT3G58130
fragaria_vesca	FvH4_5g18940 FvH4_5g18940 FvH4_5g18940 FvH4_7g18930 FvH4_7g18930 FvH4_7g18930 FvH4_7g18930 FvH4_7g18930 FvH4_7g18930 FvH4_7g18930 FvH4_7g18930 FvH4_7g18930
malus_domestica	MD16G1270300.v1.1
prunus_persica	Prupe.5G069900_v2.0.a1
pyrus_communis	pycom16g23930
rosa_chinensis	RchiOBHm_Chr7g0203331 RchiOBHm_Chr7g0203411 RchiOBHm_Chr7g0204201 RchiOBHm_Chr7g0204241
rosa_laevigata	RLG00000003532 RLG00000003534
rosa_multiflora	Rmu_sc0000571.1_g000008 Rmu_sc0000571.1_g000010 Rmu_sc0001988.1_g000001 Rmu_sc0005723.1_g000004 Rmu_sc0019458.1_g000001
rosa_roxburghii	Rroxscaffold_3G00253860 Rroxscaffold_3G00253870
rosa_rugosa	Rorug07G0075700 Rorug07G0075700 Rorug07G0075900
rosa_samantha	Rh7BG204700 Rh7BG205000 Rh7BG205200 Rh7CG216500 Rh7CG216700 Rh7CG217400 Rh7CG217800 Rh7DG212200 Rh7DG212500 Rh7DG218300 Rh7DG218500
rosa_wichuraiana	Rw7G017890 Rw7G017920 Rw7G017940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	368
Acc36I	ACCTGC	1 cut(s)	368
AccII	CGCG	2 cut(s)	134, 299
AciI	CCGC	3 cut(s)	222, 225, 499
AclWI	GGATC	2 cut(s)	219, 480
AcsI	RAATTY	1 cut(s)	51
AfaI	GTAC	1 cut(s)	682
AfiI	CCNNNNNNNGG	3 cut(s)	231, 311, 807
AgsI	TTSAA	8 cut(s)	22, 31, 61, 530, 623, 662, 1184, 1292
AjiI	CACGTC	2 cut(s)	613, 1267
AjnI	CCWGG	5 cut(s)	337, 414, 665, 800, 1068
AluBI	AGCT	3 cut(s)	409, 797, 1063
AluI	AGCT	3 cut(s)	409, 797, 1063
Alw21I	GWGCWC	3 cut(s)	411, 709, 1065
Alw26I	GTCTC	1 cut(s)	280
Alw44I	GTGCAC	1 cut(s)	705
AlwI	GGATC	2 cut(s)	219, 480
AlwNI	CAGNNNCTG	1 cut(s)	182
ApaLI	GTGCAC	1 cut(s)	705
ApeKI	GCWGC	2 cut(s)	205, 923
ApoI	RAATTY	1 cut(s)	51
ArsI	GACNNNNNNTTYG	4 cut(s)	602, 634, 1256, 1288
AspLEI	GCGC	2 cut(s)	181, 301
AspS9I	GGNCC	4 cut(s)	74, 463, 723, 1117
AsuHPI	GGTGA	3 cut(s)	383, 787, 1037
AvaII	GGWCC	4 cut(s)	74, 463, 723, 1117
BaeGI	GKGCMC	1 cut(s)	709
BanII	GRGCYC	2 cut(s)	411, 1065
Bbv12I	GWGCWC	3 cut(s)	411, 709, 1065
BbvI	GCAGC	2 cut(s)	192, 910
BceAI	ACGGC	2 cut(s)	185, 212
BciT130I	CCWGG	5 cut(s)	339, 416, 667, 802, 1070
BcoDI	GTCTC	1 cut(s)	280
BfaI	CTAG	2 cut(s)	360, 1304
BfoI	RGCGCY	1 cut(s)	182
BfuAI	ACCTGC	1 cut(s)	368
BglII	AGATCT	1 cut(s)	1126
BisI	GCNGC	3 cut(s)	206, 225, 924
BlsI	GCNGC	3 cut(s)	207, 226, 925
BmcAI	AGTACT	1 cut(s)	682
Bme1390I	CCNGG	5 cut(s)	339, 416, 667, 802, 1070
Bme18I	GGWCC	4 cut(s)	74, 463, 723, 1117
BmgBI	CACGTC	2 cut(s)	613, 1267
BmgT120I	GGNCC	4 cut(s)	74, 463, 723, 1117
BmiI	GGNNCC	3 cut(s)	76, 438, 1092
BmrFI	CCNGG	5 cut(s)	339, 416, 667, 802, 1070
BmsI	GCATC	4 cut(s)	355, 364, 650, 1018
BpmI	CTGGAG	1 cut(s)	1297
BpuEI	CTTGAG	3 cut(s)	416, 680, 1070
BsaI	GGTCTC	1 cut(s)	280
BsaJI	CCNNGG	2 cut(s)	338, 666
BsaWI	WCCGGW	1 cut(s)	304
Bsc4I	CCNNNNNNNGG	3 cut(s)	231, 311, 807
Bse118I	RCCGGY	1 cut(s)	117
Bse1I	ACTGG	3 cut(s)	710, 825, 1314
Bse3DI	GCAATG	2 cut(s)	752, 766
BseBI	CCWGG	5 cut(s)	339, 416, 667, 802, 1070
BseDI	CCNNGG	2 cut(s)	338, 666
BseGI	GGATG	3 cut(s)	487, 1120, 1141
BseLI	CCNNNNNNNGG	3 cut(s)	231, 311, 807
BseMI	GCAATG	2 cut(s)	752, 766
BseNI	ACTGG	3 cut(s)	710, 825, 1314
BseRI	GAGGAG	4 cut(s)	153, 246, 313, 316
BseSI	GKGCMC	1 cut(s)	709
BseXI	GCAGC	2 cut(s)	192, 910
BsgI	GTGCAG	1 cut(s)	635
Bsh1236I	CGCG	2 cut(s)	134, 299
BsiHKAI	GWGCWC	3 cut(s)	411, 709, 1065
BsiSI	CCGG	3 cut(s)	118, 305, 312
BslFI	GGGAC	3 cut(s)	60, 606, 1260
BslI	CCNNNNNNNGG	3 cut(s)	231, 311, 807
BsmAI	GTCTC	1 cut(s)	280
BsmFI	GGGAC	3 cut(s)	60, 606, 1260
BsmI	GAATGC	2 cut(s)	17, 355
Bso31I	GGTCTC	1 cut(s)	280
Bsp1286I	GDGCHC	3 cut(s)	411, 709, 1065
Bsp143I	GATC	4 cut(s)	91, 211, 472, 1126
BspACI	CCGC	3 cut(s)	222, 225, 499
BspFNI	CGCG	2 cut(s)	134, 299
BspLI	GGNNCC	3 cut(s)	76, 438, 1092
BspMI	ACCTGC	1 cut(s)	368
BspPI	GGATC	2 cut(s)	219, 480
BspQI	GCTCTTC	2 cut(s)	399, 1053
BspTNI	GGTCTC	1 cut(s)	280
BsrDI	GCAATG	2 cut(s)	752, 766
BsrFI	RCCGGY	1 cut(s)	117
BsrI	ACTGG	3 cut(s)	710, 825, 1314
BssAI	RCCGGY	1 cut(s)	117
BssECI	CCNNGG	2 cut(s)	338, 666
BssMI	GATC	4 cut(s)	91, 211, 472, 1126
Bst2UI	CCWGG	5 cut(s)	339, 416, 667, 802, 1070
Bst4CI	ACNGT	2 cut(s)	599, 1253
Bst6I	CTCTTC	7 cut(s)	105, 163, 399, 845, 906, 1053, 1179
BstAPI	GCANNNNNTGC	2 cut(s)	352, 817
BstC8I	GCNNGC	3 cut(s)	119, 639, 822
BstF5I	GGATG	3 cut(s)	487, 1120, 1141
BstFNI	CGCG	2 cut(s)	134, 299
BstH2I	RGCGCY	1 cut(s)	182
BstHHI	GCGC	2 cut(s)	181, 301
BstKTI	GATC	4 cut(s)	94, 214, 475, 1129
BstMAI	GTCTC	1 cut(s)	280
BstMBI	GATC	4 cut(s)	91, 211, 472, 1126
BstMWI	GCNNNNNNNGC	4 cut(s)	176, 352, 817, 929
BstNI	CCWGG	5 cut(s)	339, 416, 667, 802, 1070
BstNSI	RCATGY	1 cut(s)	820
BstSCI	CCNGG	5 cut(s)	337, 414, 665, 800, 1068
BstSLI	GKGCMC	1 cut(s)	709
BstUI	CGCG	2 cut(s)	134, 299
BstV1I	GCAGC	2 cut(s)	192, 910
BstX2I	RGATCY	3 cut(s)	211, 472, 1126
BstYI	RGATCY	3 cut(s)	211, 472, 1126
BtgZI	GCGATG	1 cut(s)	820
BtrI	CACGTC	2 cut(s)	613, 1267
BtsCI	GGATG	3 cut(s)	487, 1120, 1141
BtsI	GCAGTG	2 cut(s)	847, 908
BtsIMutI	CAGTG	6 cut(s)	595, 717, 832, 847, 908, 1249
BveI	ACCTGC	1 cut(s)	368
Cac8I	GCNNGC	3 cut(s)	119, 639, 822
CaiI	CAGNNNCTG	1 cut(s)	182
CfoI	GCGC	2 cut(s)	181, 301
Cfr10I	RCCGGY	1 cut(s)	117
Cfr13I	GGNCC	4 cut(s)	74, 463, 723, 1117
Csp6I	GTAC	1 cut(s)	681
CviAII	CATG	3 cut(s)	817, 895, 952
CviJI	RGCY	9 cut(s)	315, 409, 419, 631, 665, 797, 824, 1063, 1073
CviKI_1	RGCY	9 cut(s)	315, 409, 419, 631, 665, 797, 824, 1063, 1073
CviQI	GTAC	1 cut(s)	681
DpnI	GATC	4 cut(s)	93, 213, 474, 1128
DpnII	GATC	4 cut(s)	91, 211, 472, 1126
Eam1104I	CTCTTC	7 cut(s)	105, 163, 399, 845, 906, 1053, 1179
EarI	CTCTTC	7 cut(s)	105, 163, 399, 845, 906, 1053, 1179
Ecl136II	GAGCTC	2 cut(s)	409, 1063
Eco24I	GRGCYC	2 cut(s)	411, 1065
Eco31I	GGTCTC	1 cut(s)	280
Eco47I	GGWCC	4 cut(s)	74, 463, 723, 1117
Eco53kI	GAGCTC	2 cut(s)	409, 1063
EcoICRI	GAGCTC	2 cut(s)	409, 1063
EcoRII	CCWGG	5 cut(s)	337, 414, 665, 800, 1068
EcoT22I	ATGCAT	1 cut(s)	19
EcoT38I	GRGCYC	2 cut(s)	411, 1065
FaeI	CATG	3 cut(s)	820, 898, 955
FalI	AAGNNNNNCTT	2 cut(s)	615, 647
FaqI	GGGAC	3 cut(s)	60, 606, 1260
FatI	CATG	3 cut(s)	816, 894, 951
Fnu4HI	GCNGC	3 cut(s)	206, 225, 924
FokI	GGATG	3 cut(s)	494, 1107, 1148
FriOI	GRGCYC	2 cut(s)	411, 1065
Fsp4HI	GCNGC	3 cut(s)	206, 225, 924
FspBI	CTAG	2 cut(s)	360, 1304
GlaI	GCGC	2 cut(s)	180, 300
GluI	GCNGC	3 cut(s)	206, 225, 924
GsuI	CTGGAG	1 cut(s)	1297
HaeII	RGCGCY	1 cut(s)	182
HapII	CCGG	3 cut(s)	118, 305, 312
HhaI	GCGC	2 cut(s)	181, 301
Hin1II	CATG	3 cut(s)	820, 898, 955
Hin6I	GCGC	2 cut(s)	179, 299
HinP1I	GCGC	2 cut(s)	179, 299
HinfI	GANTC	9 cut(s)	65, 185, 235, 457, 502, 890, 947, 1111, 1156
HpaII	CCGG	3 cut(s)	118, 305, 312
HphI	GGTGA	3 cut(s)	383, 787, 1037
Hpy166II	GTNNAC	1 cut(s)	707
Hpy188I	TCNGA	2 cut(s)	282, 291
Hpy8I	GTNNAC	1 cut(s)	707
HpyCH4III	ACNGT	2 cut(s)	599, 1253
HpyCH4IV	ACGT	2 cut(s)	612, 1266
HpyF10VI	GCNNNNNNNGC	4 cut(s)	176, 352, 817, 929
HpySE526I	ACGT	2 cut(s)	612, 1266
Hsp92II	CATG	3 cut(s)	820, 898, 955
HspAI	GCGC	2 cut(s)	179, 299
KroI	GCCGGC	1 cut(s)	117
KroNI	GCCGGC	1 cut(s)	119
Kzo9I	GATC	4 cut(s)	91, 211, 472, 1126
LguI	GCTCTTC	2 cut(s)	399, 1053
Lsp1109I	GCAGC	2 cut(s)	192, 910
LweI	GCATC	4 cut(s)	355, 364, 650, 1018
MaeI	CTAG	2 cut(s)	360, 1304
MaeII	ACGT	2 cut(s)	612, 1266
MaeIII	GTNAC	5 cut(s)	599, 608, 645, 1253, 1262
MalI	GATC	4 cut(s)	93, 213, 474, 1128
MboI	GATC	4 cut(s)	91, 211, 472, 1126
MfeI	CAATTG	1 cut(s)	1020
MflI	RGATCY	3 cut(s)	211, 472, 1126
MhlI	GDGCHC	3 cut(s)	411, 709, 1065
MlyI	GAGTC	2 cut(s)	899, 956
MmeI	TCCRAC	1 cut(s)	989
Mph1103I	ATGCAT	1 cut(s)	19
MreI	CGCCGGCG	1 cut(s)	117
MroNI	GCCGGC	1 cut(s)	117
MseI	TTAA	2 cut(s)	1296, 1318
MslI	CAYNNNNRTG	2 cut(s)	882, 939
MspI	CCGG	3 cut(s)	118, 305, 312
MspR9I	CCNGG	5 cut(s)	339, 416, 667, 802, 1070
MunI	CAATTG	1 cut(s)	1020
Mva1269I	GAATGC	2 cut(s)	17, 355
MvaI	CCWGG	5 cut(s)	339, 416, 667, 802, 1070
MvnI	CGCG	2 cut(s)	134, 299
MwoI	GCNNNNNNNGC	4 cut(s)	176, 352, 817, 929
NaeI	GCCGGC	1 cut(s)	119
NdeII	GATC	4 cut(s)	91, 211, 472, 1126
NgoMIV	GCCGGC	1 cut(s)	117
NlaIII	CATG	3 cut(s)	820, 898, 955
NlaIV	GGNNCC	3 cut(s)	76, 438, 1092
NmuCI	GTSAC	3 cut(s)	608, 645, 1262
NsiI	ATGCAT	1 cut(s)	19
NspI	RCATGY	1 cut(s)	820
PaqCI	CACCTGC	1 cut(s)	368
PciSI	GCTCTTC	2 cut(s)	399, 1053
PcsI	WCGNNNNNNNCGW	1 cut(s)	278
PctI	GAATGC	2 cut(s)	17, 355
PdiI	GCCGGC	1 cut(s)	119
PfeI	GAWTC	7 cut(s)	65, 185, 235, 457, 502, 1111, 1156
PkrI	GCNGC	3 cut(s)	207, 226, 925
PleI	GAGTC	2 cut(s)	898, 955
PpsI	GAGTC	2 cut(s)	898, 955
Psp124BI	GAGCTC	2 cut(s)	411, 1065
Psp6I	CCWGG	5 cut(s)	337, 414, 665, 800, 1068
PspGI	CCWGG	5 cut(s)	337, 414, 665, 800, 1068
PspN4I	GGNNCC	3 cut(s)	76, 438, 1092
PspPI	GGNCC	4 cut(s)	74, 463, 723, 1117
PstNI	CAGNNNCTG	1 cut(s)	182
PsuI	RGATCY	3 cut(s)	211, 472, 1126
RsaI	GTAC	1 cut(s)	682
RsaNI	GTAC	1 cut(s)	681
RseI	CAYNNNNRTG	2 cut(s)	882, 939
SacI	GAGCTC	2 cut(s)	411, 1065
SapI	GCTCTTC	2 cut(s)	399, 1053
SaqAI	TTAA	2 cut(s)	1296, 1318
SatI	GCNGC	3 cut(s)	206, 225, 924
Sau3AI	GATC	4 cut(s)	91, 211, 472, 1126
Sau96I	GGNCC	4 cut(s)	74, 463, 723, 1117
ScaI	AGTACT	1 cut(s)	682
SchI	GAGTC	2 cut(s)	899, 956
ScrFI	CCNGG	5 cut(s)	339, 416, 667, 802, 1070
SduI	GDGCHC	3 cut(s)	411, 709, 1065
SfaNI	GCATC	4 cut(s)	355, 364, 650, 1018
SgrAI	CRCCGGYG	1 cut(s)	117
SinI	GGWCC	4 cut(s)	74, 463, 723, 1117
SmiMI	CAYNNNNRTG	2 cut(s)	882, 939
SmlI	CTYRAG	3 cut(s)	431, 695, 1085
SmoI	CTYRAG	3 cut(s)	431, 695, 1085
SsiI	CCGC	3 cut(s)	222, 225, 499
SspI	AATATT	1 cut(s)	1000
SspMI	CTAG	2 cut(s)	360, 1304
SstI	GAGCTC	2 cut(s)	411, 1065
StyD4I	CCNGG	5 cut(s)	337, 414, 665, 800, 1068
TaaI	ACNGT	2 cut(s)	599, 1253
TaiI	ACGT	2 cut(s)	615, 1269
TaqI	TCGA	1 cut(s)	986
TaqII	GACCGA	1 cut(s)	262
TatI	WGTACW	1 cut(s)	680
TauI	GCSGC	1 cut(s)	227
TfiI	GAWTC	7 cut(s)	65, 185, 235, 457, 502, 1111, 1156
Tru1I	TTAA	2 cut(s)	1296, 1318
Tru9I	TTAA	2 cut(s)	1296, 1318
TscAI	CASTG	6 cut(s)	602, 717, 832, 847, 908, 1256
TseFI	GTSAC	3 cut(s)	608, 645, 1262
TseI	GCWGC	2 cut(s)	205, 923
Tsp45I	GTSAC	3 cut(s)	608, 645, 1262
TspDTI	ATGAA	3 cut(s)	17, 322, 771
TspGWI	ACGGA	2 cut(s)	228, 249
TspRI	CASTG	6 cut(s)	602, 717, 832, 847, 908, 1256
VneI	GTGCAC	1 cut(s)	705
VpaK11BI	GGWCC	4 cut(s)	74, 463, 723, 1117
XapI	RAATTY	1 cut(s)	51
XbaI	TCTAGA	1 cut(s)	359
XceI	RCATGY	1 cut(s)	820
XcmI	CCANNNNNNNNNTGG	1 cut(s)	717
XspI	CTAG	2 cut(s)	360, 1304
ZrmI	AGTACT	1 cut(s)	682
Zsp2I	ATGCAT	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.