RchiOBHm_Chr7g0203411

N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001436
Physical Location & Seq
Forward (+)
21105616 .. 21111788
6173 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18206

Sequence Viewer

Length: 630 bp
ATGGTTCATACTCACCTTCCAAGGGCGCTTTTCTTGAATGATTCTAATAATGGTGGCAGTGCCAAGACGAGAAATGTGTTGCTGGTTGTTGCCCACGCAGATGATGAGTCCATGTTCTTCACTCCAACAATAAACTACCTCACTTCGAGAGGGCATAATATTCACATCTTATGCTTGTCAAATGGTGATGCAGATGGTAAGGGAAATACCAGAAAAGAAGAGCTCTACCAGGCTTCTGCAATCCTCAAGGTTCCATATCAACATGTGAAAATTCTGGACCATCCAGATCTTCAGGATGGTTTTGGTAAGTTGTGGATCACAATTTATTGGCAAAGATTATTGAAGAGGAAGTCGAAGTTTTTACTTGCATCGTCACAGAGGAAAGTTGAAGCCTGGGAACTTGTCAGTACCAATATATTCCGCAAGTATAGTGGACCAGTGGATATATGGTTCTTCAAGTTATATTCTATGCAATGCTCAAATAAAATGTTGCATTGCTTGGTAAATCAGCAACCCCGAAAGAGCTTCCTGGCGATGGCACAACATGCAAGCCAATGGGTTTGGTTTCGCAAGCTTTTTGTGGCATTTTCCAGTTGCACCTATGTGAACACGCTTAGAAAGATGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00563 ko01100 map00563 map01100
Pfam Domains
Protein Families
PIG-L

Protein Analysis

209

Amino Acids

24.24

Weight (kDa)

9.81

Isoelectric Point (pI)

35.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PIG-L PF02585 27 - 96 1.7e-14 GlcNAc-PI de-N-acetylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 421
AclWI GGATC 1 cut(s) 323
AcsI RAATTY 1 cut(s) 270
AcuI CTGAAG 1 cut(s) 275
AfaI GTAC 1 cut(s) 409
AfiI CCNNNNNNNGG 2 cut(s) 22, 535
AflIII ACRYGT 1 cut(s) 262
AgsI TTSAA 4 cut(s) 37, 343, 389, 457
AjnI CCWGG 3 cut(s) 228, 392, 528
AleI CACNNNNGTG 1 cut(s) 602
AloI GAACNNNNNNTCC 2 cut(s) 434, 466
AluBI AGCT 3 cut(s) 223, 525, 574
AluI AGCT 3 cut(s) 223, 525, 574
Alw21I GWGCWC 1 cut(s) 225
AlwI GGATC 1 cut(s) 323
ApoI RAATTY 1 cut(s) 270
AspLEI GCGC 1 cut(s) 28
AspS9I GGNCC 2 cut(s) 277, 434
AsuHPI GGTGA 2 cut(s) 5, 197
AvaII GGWCC 2 cut(s) 277, 434
BanII GRGCYC 1 cut(s) 225
Bbv12I GWGCWC 1 cut(s) 225
BccI CCATC 4 cut(s) 188, 288, 290, 529
BciT130I CCWGG 3 cut(s) 230, 394, 530
BfoI RGCGCY 1 cut(s) 29
BglII AGATCT 1 cut(s) 286
Bme1390I CCNGG 3 cut(s) 230, 394, 530
Bme18I GGWCC 2 cut(s) 277, 434
BmgT120I GGNCC 2 cut(s) 277, 434
BmiI GGNNCC 1 cut(s) 252
BmrFI CCNGG 3 cut(s) 230, 394, 530
BmsI GCATC 2 cut(s) 178, 377
BpuEI CTTGAG 1 cut(s) 230
BsaJI CCNNGG 2 cut(s) 20, 393
Bsc4I CCNNNNNNNGG 2 cut(s) 22, 535
Bse1I ACTGG 2 cut(s) 437, 591
Bse3DI GCAATG 2 cut(s) 479, 493
BseBI CCWGG 3 cut(s) 230, 394, 530
BseDI CCNNGG 2 cut(s) 20, 393
BseGI GGATG 2 cut(s) 280, 301
BseLI CCNNNNNNNGG 2 cut(s) 22, 535
BseMI GCAATG 2 cut(s) 479, 493
BseNI ACTGG 2 cut(s) 437, 591
BsiHKAI GWGCWC 1 cut(s) 225
BslI CCNNNNNNNGG 2 cut(s) 22, 535
Bsp1286I GDGCHC 1 cut(s) 225
Bsp143I GATC 2 cut(s) 286, 315
BspACI CCGC 1 cut(s) 421
BspLI GGNNCC 1 cut(s) 252
BspPI GGATC 1 cut(s) 323
BspQI GCTCTTC 1 cut(s) 213
BsrDI GCAATG 2 cut(s) 479, 493
BsrI ACTGG 2 cut(s) 437, 591
BssECI CCNNGG 2 cut(s) 20, 393
BssMI GATC 2 cut(s) 286, 315
BssT1I CCWWGG 1 cut(s) 20
Bst2UI CCWGG 3 cut(s) 230, 394, 530
Bst6I CTCTTC 2 cut(s) 213, 338
BstAPI GCANNNNNTGC 1 cut(s) 545
BstC8I GCNNGC 2 cut(s) 550, 572
BstDEI CTNAG 1 cut(s) 614
BstF5I GGATG 2 cut(s) 280, 301
BstH2I RGCGCY 1 cut(s) 29
BstHHI GCGC 1 cut(s) 28
BstKTI GATC 2 cut(s) 289, 318
BstMBI GATC 2 cut(s) 286, 315
BstMWI GCNNNNNNNGC 1 cut(s) 545
BstNI CCWGG 3 cut(s) 230, 394, 530
BstNSI RCATGY 2 cut(s) 266, 548
BstSCI CCNGG 3 cut(s) 228, 392, 528
BstX2I RGATCY 1 cut(s) 286
BstYI RGATCY 1 cut(s) 286
BtgZI GCGATG 1 cut(s) 548
BtsCI GGATG 2 cut(s) 280, 301
BtsI GCAGTG 1 cut(s) 64
BtsIMutI CAGTG 2 cut(s) 64, 444
Cac8I GCNNGC 2 cut(s) 550, 572
CfoI GCGC 1 cut(s) 28
Cfr13I GGNCC 2 cut(s) 277, 434
Csp6I GTAC 1 cut(s) 408
CspCI CAANNNNNGTGG 2 cut(s) 412, 447
CviAII CATG 3 cut(s) 112, 263, 545
CviJI RGCY 6 cut(s) 223, 233, 392, 525, 552, 574
CviKI_1 RGCY 6 cut(s) 223, 233, 392, 525, 552, 574
CviQI GTAC 1 cut(s) 408
DdeI CTNAG 1 cut(s) 614
DpnI GATC 2 cut(s) 288, 317
DpnII GATC 2 cut(s) 286, 315
Eam1104I CTCTTC 2 cut(s) 213, 338
EarI CTCTTC 2 cut(s) 213, 338
Ecl136II GAGCTC 1 cut(s) 223
Eco130I CCWWGG 1 cut(s) 20
Eco24I GRGCYC 1 cut(s) 225
Eco47I GGWCC 2 cut(s) 277, 434
Eco53kI GAGCTC 1 cut(s) 223
Eco57I CTGAAG 1 cut(s) 275
EcoICRI GAGCTC 1 cut(s) 223
EcoRII CCWGG 3 cut(s) 228, 392, 528
EcoT14I CCWWGG 1 cut(s) 20
EcoT38I GRGCYC 1 cut(s) 225
ErhI CCWWGG 1 cut(s) 20
FaeI CATG 3 cut(s) 115, 266, 548
FatI CATG 3 cut(s) 111, 262, 544
FokI GGATG 2 cut(s) 267, 308
FriOI GRGCYC 1 cut(s) 225
GlaI GCGC 1 cut(s) 27
HaeII RGCGCY 1 cut(s) 29
HhaI GCGC 1 cut(s) 28
Hin1II CATG 3 cut(s) 115, 266, 548
Hin6I GCGC 1 cut(s) 26
HinP1I GCGC 1 cut(s) 26
HindIII AAGCTT 1 cut(s) 572
HinfI GANTC 2 cut(s) 41, 107
HphI GGTGA 2 cut(s) 5, 197
Hpy166II GTNNAC 2 cut(s) 434, 607
Hpy188III TCNNGA 5 cut(s) 34, 147, 275, 284, 293
Hpy8I GTNNAC 2 cut(s) 434, 607
HpyAV CCTTC 1 cut(s) 26
HpyCH4V TGCA 7 cut(s) 191, 239, 368, 472, 493, 548, 597
HpyF10VI GCNNNNNNNGC 1 cut(s) 545
HpyF3I CTNAG 1 cut(s) 614
Hsp92II CATG 3 cut(s) 115, 266, 548
HspAI GCGC 1 cut(s) 26
Kzo9I GATC 2 cut(s) 286, 315
LguI GCTCTTC 1 cut(s) 213
LweI GCATC 2 cut(s) 178, 377
MaeIII GTNAC 1 cut(s) 372
MalI GATC 2 cut(s) 288, 317
MboI GATC 2 cut(s) 286, 315
MboII GAAGA 5 cut(s) 109, 230, 281, 355, 445
MflI RGATCY 1 cut(s) 286
MhlI GDGCHC 1 cut(s) 225
MluCI AATT 2 cut(s) 270, 321
MlyI GAGTC 1 cut(s) 116
MmeI TCCRAC 1 cut(s) 149
MnlI CCTC 5 cut(s) 143, 149, 254, 339, 372
MslI CAYNNNNRTG 2 cut(s) 99, 602
MspR9I CCNGG 3 cut(s) 230, 394, 530
MvaI CCWGG 3 cut(s) 230, 394, 530
MwoI GCNNNNNNNGC 1 cut(s) 545
NdeII GATC 2 cut(s) 286, 315
NlaIII CATG 3 cut(s) 115, 266, 548
NlaIV GGNNCC 1 cut(s) 252
NmuCI GTSAC 1 cut(s) 372
NspI RCATGY 2 cut(s) 266, 548
OliI CACNNNNGTG 1 cut(s) 602
PciI ACATGT 1 cut(s) 262
PciSI GCTCTTC 1 cut(s) 213
PfeI GAWTC 1 cut(s) 41
PleI GAGTC 1 cut(s) 115
PpsI GAGTC 1 cut(s) 115
PscI ACATGT 1 cut(s) 262
Psp124BI GAGCTC 1 cut(s) 225
Psp6I CCWGG 3 cut(s) 228, 392, 528
PspGI CCWGG 3 cut(s) 228, 392, 528
PspN4I GGNNCC 1 cut(s) 252
PspPI GGNCC 2 cut(s) 277, 434
PsuI RGATCY 1 cut(s) 286
RsaI GTAC 1 cut(s) 409
RsaNI GTAC 1 cut(s) 408
RseI CAYNNNNRTG 2 cut(s) 99, 602
SacI GAGCTC 1 cut(s) 225
SapI GCTCTTC 1 cut(s) 213
Sau3AI GATC 2 cut(s) 286, 315
Sau96I GGNCC 2 cut(s) 277, 434
SchI GAGTC 1 cut(s) 116
ScrFI CCNGG 3 cut(s) 230, 394, 530
SduI GDGCHC 1 cut(s) 225
SetI ASST 7 cut(s) 18, 141, 225, 252, 527, 576, 602
SfaNI GCATC 2 cut(s) 178, 377
SinI GGWCC 2 cut(s) 277, 434
SmiMI CAYNNNNRTG 2 cut(s) 99, 602
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
Sse9I AATT 2 cut(s) 270, 321
SsiI CCGC 1 cut(s) 421
SspI AATATT 1 cut(s) 160
SstI GAGCTC 1 cut(s) 225
StyD4I CCNGG 3 cut(s) 228, 392, 528
StyI CCWWGG 1 cut(s) 20
TaqI TCGA 2 cut(s) 146, 353
TasI AATT 2 cut(s) 270, 321
TfiI GAWTC 1 cut(s) 41
TscAI CASTG 2 cut(s) 64, 444
TseFI GTSAC 1 cut(s) 372
Tsp45I GTSAC 1 cut(s) 372
TspRI CASTG 2 cut(s) 64, 444
VpaK11BI GGWCC 2 cut(s) 277, 434
XapI RAATTY 1 cut(s) 270
XceI RCATGY 2 cut(s) 266, 548
XcmI CCANNNNNNNNNTGG 1 cut(s) 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.