RchiOBHm_Chr7g0204201

N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001436
Physical Location & Seq
Reverse (-)
21789142 .. 21795377
6236 bp
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UTR
Exon/CDS
Intron
PRQ18275

Sequence Viewer

Length: 270 bp
ATGGCGTGGTTATTAATTATCTCTTCTATGATTGTAATTTGGATAGCTTTTCTGTTCAAAATTCTCCATGGTGCATACTCACCTTCCAAGGGTGCTTTTGTGAATGATTCTAATAATGGTGGCAGTGCCAAGAAGAGAAATGTGTTGCTGGTTGTTTCCCACCCAGATGATGAGTCCATGTTCTTCACTCCAACAATAAACTACCCCACTTCGAGAAGGCATTATATTCACATCTTATGCTTGTCAATTGTCGCTGCGAGATTGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00563 ko01100 map00563 map01100
Pfam Domains
Protein Families
PIG-L

Protein Analysis

89

Amino Acids

9.96

Weight (kDa)

9.65

Isoelectric Point (pI)

51.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PIG-L PF02585 49 - 82 8.1e-06 GlcNAc-PI de-N-acetylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 60
AfiI CCNNNNNNNGG 1 cut(s) 89
AgsI TTSAA 1 cut(s) 58
AluBI AGCT 1 cut(s) 47
AluI AGCT 1 cut(s) 47
ApeKI GCWGC 1 cut(s) 254
ApoI RAATTY 1 cut(s) 60
AseI ATTAAT 1 cut(s) 14
AsuHPI GGTGA 1 cut(s) 72
BbvI GCAGC 1 cut(s) 241
BisI GCNGC 1 cut(s) 255
BlsI GCNGC 1 cut(s) 256
BsaJI CCNNGG 2 cut(s) 67, 87
Bsc4I CCNNNNNNNGG 1 cut(s) 89
BseDI CCNNGG 2 cut(s) 67, 87
BseLI CCNNNNNNNGG 1 cut(s) 89
BseXI GCAGC 1 cut(s) 241
BslI CCNNNNNNNGG 1 cut(s) 89
Bsp19I CCATGG 1 cut(s) 67
BssECI CCNNGG 2 cut(s) 67, 87
BssT1I CCWWGG 2 cut(s) 67, 87
Bst6I CTCTTC 2 cut(s) 28, 128
BstDSI CCRYGG 1 cut(s) 67
BstV1I GCAGC 1 cut(s) 241
BtgI CCRYGG 1 cut(s) 67
BtsI GCAGTG 1 cut(s) 130
BtsIMutI CAGTG 1 cut(s) 130
CviAII CATG 2 cut(s) 68, 178
CviJI RGCY 1 cut(s) 47
CviKI_1 RGCY 1 cut(s) 47
Eam1104I CTCTTC 2 cut(s) 28, 128
EarI CTCTTC 2 cut(s) 28, 128
Eco130I CCWWGG 2 cut(s) 67, 87
EcoT14I CCWWGG 2 cut(s) 67, 87
ErhI CCWWGG 2 cut(s) 67, 87
FaeI CATG 2 cut(s) 71, 181
FaiI YATR 6 cut(s) 29, 69, 76, 179, 225, 238
FatI CATG 2 cut(s) 67, 177
Fnu4HI GCNGC 1 cut(s) 255
Fsp4HI GCNGC 1 cut(s) 255
GluI GCNGC 1 cut(s) 255
Hin1II CATG 2 cut(s) 71, 181
HinfI GANTC 2 cut(s) 107, 173
HphI GGTGA 1 cut(s) 72
Hpy188III TCNNGA 1 cut(s) 213
HpyAV CCTTC 2 cut(s) 93, 210
HpyCH4V TGCA 1 cut(s) 74
Hsp92II CATG 2 cut(s) 71, 181
LpnPI CCDG 2 cut(s) 134, 177
Lsp1109I GCAGC 1 cut(s) 241
MboII GAAGA 3 cut(s) 15, 145, 175
MfeI CAATTG 1 cut(s) 246
MluCI AATT 4 cut(s) 15, 36, 60, 246
MlyI GAGTC 1 cut(s) 182
MmeI TCCRAC 1 cut(s) 215
MseI TTAA 1 cut(s) 14
MslI CAYNNNNRTG 1 cut(s) 165
MunI CAATTG 1 cut(s) 246
NcoI CCATGG 1 cut(s) 67
NlaIII CATG 2 cut(s) 71, 181
PfeI GAWTC 1 cut(s) 107
PkrI GCNGC 1 cut(s) 256
PleI GAGTC 1 cut(s) 181
PpsI GAGTC 1 cut(s) 181
PshBI ATTAAT 1 cut(s) 14
RseI CAYNNNNRTG 1 cut(s) 165
SaqAI TTAA 1 cut(s) 14
SatI GCNGC 1 cut(s) 255
SchI GAGTC 1 cut(s) 182
SetI ASST 2 cut(s) 49, 85
SgeI CNNG 9 cut(s) 18, 80, 100, 142, 161, 176, 190, 225, 253
SmiMI CAYNNNNRTG 1 cut(s) 165
Sse9I AATT 4 cut(s) 15, 36, 60, 246
StyI CCWWGG 2 cut(s) 67, 87
TaqI TCGA 1 cut(s) 212
TasI AATT 4 cut(s) 15, 36, 60, 246
TfiI GAWTC 1 cut(s) 107
Tru1I TTAA 1 cut(s) 14
Tru9I TTAA 1 cut(s) 14
TscAI CASTG 1 cut(s) 130
TseI GCWGC 1 cut(s) 254
TspRI CASTG 1 cut(s) 130
VspI ATTAAT 1 cut(s) 14
XapI RAATTY 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.