Rroxscaffold_3G00253860

N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
48059542 .. 48062361
2820 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00253860.1

Sequence Viewer

Length: 303 bp
ATGGCATGTTTATTAATTATCTCTTCTATGATTGTAATATGGATAGCTTTTCTGTTCAAAATTCTCCATGGTTCATACTCACCTTCCAAGGGTGCTTTCTTGAATTATTCTAATAATGGTGGCAGTGCCAAGAAGAGAAATGTGTTGCTGGTTGTTTCCCACTCAGATGATGAGTCCATGCTCAGTGAAATATTTCAACAGGGCAGGCTAATTGCTGAAACAGACATTGCCAGACTCCATTTAAATTCACTAACACAGAGGCTACTTGAATATTTAGAAGATCAGTTGGTTAAAGCTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

100

Amino Acids

11.23

Weight (kDa)

6.27

Isoelectric Point (pI)

34.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 60, 244
AfiI CCNNNNNNNGG 1 cut(s) 89
AgsI TTSAA 4 cut(s) 58, 103, 197, 269
AjuI GAANNNNNNNTTGG 2 cut(s) 80, 112
AluBI AGCT 2 cut(s) 47, 296
AluI AGCT 2 cut(s) 47, 296
ApoI RAATTY 2 cut(s) 60, 244
AseI ATTAAT 1 cut(s) 14
Asp700I GAANNNNTTC 1 cut(s) 192
AsuHPI GGTGA 1 cut(s) 72
BsaJI CCNNGG 2 cut(s) 67, 87
Bsc4I CCNNNNNNNGG 1 cut(s) 89
Bse3DI GCAATG 1 cut(s) 225
BseDI CCNNGG 2 cut(s) 67, 87
BseLI CCNNNNNNNGG 1 cut(s) 89
BseMI GCAATG 1 cut(s) 225
BseMII CTCAG 2 cut(s) 177, 196
BslI CCNNNNNNNGG 1 cut(s) 89
Bsp143I GATC 1 cut(s) 280
Bsp19I CCATGG 1 cut(s) 67
BspCNI CTCAG 2 cut(s) 176, 195
BsrDI GCAATG 1 cut(s) 225
BssECI CCNNGG 2 cut(s) 67, 87
BssMI GATC 1 cut(s) 280
BssT1I CCWWGG 2 cut(s) 67, 87
Bst6I CTCTTC 2 cut(s) 28, 128
BstC8I GCNNGC 1 cut(s) 206
BstDEI CTNAG 2 cut(s) 163, 182
BstDSI CCRYGG 1 cut(s) 67
BstKTI GATC 1 cut(s) 283
BstMBI GATC 1 cut(s) 280
BstNSI RCATGY 1 cut(s) 9
BtgI CCRYGG 1 cut(s) 67
BtsI GCAGTG 1 cut(s) 130
BtsIMutI CAGTG 2 cut(s) 130, 190
Cac8I GCNNGC 1 cut(s) 206
CviAII CATG 3 cut(s) 6, 68, 178
CviJI RGCY 4 cut(s) 47, 208, 262, 296
CviKI_1 RGCY 4 cut(s) 47, 208, 262, 296
DdeI CTNAG 2 cut(s) 163, 182
DpnI GATC 1 cut(s) 282
DpnII GATC 1 cut(s) 280
DraI TTTAAA 1 cut(s) 243
Eam1104I CTCTTC 2 cut(s) 28, 128
EarI CTCTTC 2 cut(s) 28, 128
Eco130I CCWWGG 2 cut(s) 67, 87
EcoT14I CCWWGG 2 cut(s) 67, 87
ErhI CCWWGG 2 cut(s) 67, 87
FaeI CATG 3 cut(s) 9, 71, 181
FaiI YATR 6 cut(s) 7, 29, 40, 69, 76, 179
FatI CATG 3 cut(s) 5, 67, 177
Hin1II CATG 3 cut(s) 9, 71, 181
HinfI GANTC 2 cut(s) 173, 234
HphI GGTGA 1 cut(s) 72
Hpy188I TCNGA 1 cut(s) 166
Hpy188III TCNNGA 1 cut(s) 100
HpyAV CCTTC 1 cut(s) 93
HpyF3I CTNAG 2 cut(s) 163, 182
Hsp92II CATG 3 cut(s) 9, 71, 181
Kzo9I GATC 1 cut(s) 280
LpnPI CCDG 4 cut(s) 134, 185, 190, 244
MalI GATC 1 cut(s) 282
MboI GATC 1 cut(s) 280
MboII GAAGA 3 cut(s) 15, 145, 290
MluCI AATT 5 cut(s) 15, 60, 103, 210, 244
MlyI GAGTC 2 cut(s) 182, 228
MnlI CCTC 1 cut(s) 252
MroXI GAANNNNTTC 1 cut(s) 192
MseI TTAA 3 cut(s) 14, 242, 291
MslI CAYNNNNRTG 1 cut(s) 165
NcoI CCATGG 1 cut(s) 67
NdeII GATC 1 cut(s) 280
NlaIII CATG 3 cut(s) 9, 71, 181
NspI RCATGY 1 cut(s) 9
PdmI GAANNNNTTC 1 cut(s) 192
PleI GAGTC 2 cut(s) 181, 228
PpsI GAGTC 2 cut(s) 181, 228
PshBI ATTAAT 1 cut(s) 14
RseI CAYNNNNRTG 1 cut(s) 165
SaqAI TTAA 3 cut(s) 14, 242, 291
Sau3AI GATC 1 cut(s) 280
SchI GAGTC 2 cut(s) 182, 228
SetI ASST 3 cut(s) 49, 85, 298
SmiI ATTTAAAT 1 cut(s) 243
SmiMI CAYNNNNRTG 1 cut(s) 165
Sse9I AATT 5 cut(s) 15, 60, 103, 210, 244
SspI AATATT 2 cut(s) 192, 272
StyI CCWWGG 2 cut(s) 67, 87
SwaI ATTTAAAT 1 cut(s) 243
TasI AATT 5 cut(s) 15, 60, 103, 210, 244
Tru1I TTAA 3 cut(s) 14, 242, 291
Tru9I TTAA 3 cut(s) 14, 242, 291
TscAI CASTG 2 cut(s) 130, 190
TspDTI ATGAA 1 cut(s) 63
TspRI CASTG 2 cut(s) 130, 190
VspI ATTAAT 1 cut(s) 14
XapI RAATTY 2 cut(s) 60, 244
XceI RCATGY 1 cut(s) 9
XmnI GAANNNNTTC 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.