RLG00000003532

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001436
Physical Location & Seq
Reverse (-)
49743862 .. 49745280
1419 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003532

Sequence Viewer

Length: 396 bp
ATGATGGAGAAAAAGAAAAAGATGCCGATGTTGGCACGGCTCAGTGCAATATTTCAACAGGGCAGGCTAATTGCTGAAACAGACATTGCCAGACTCCATTTAAAAATTCACTCCTGCAAGCAAGCTCAACGAAACAAGTCCAGAAGGCCGGCAGACCTGTTTGAGTGTAAGATTGATCTGCCGCTGCGTATTTGTGAAATGCTTGGGATGCTTACCACGAAGAATGAAGAGGCATATAGTGGATGCCTGAGATCAAAGCATTTTATGGGGCGAAATGATGATGCGATCATGGGGAGAGTGTTGAAGCTAAGTTCCGCGGTTGGGCTGATTGGTACAAGGCAGAGAACACAGAGGCTACTTGAATATTTAGAAGATCAGTTGGTTAAGGCTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

15.08

Weight (kDa)

9.81

Isoelectric Point (pI)

46.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 317
AciI CCGC 3 cut(s) 182, 315, 317
AcsI RAATTY 1 cut(s) 105
AfaI GTAC 1 cut(s) 334
AfiI CCNNNNNNNGG 1 cut(s) 321
AgsI TTSAA 3 cut(s) 56, 304, 362
AluBI AGCT 2 cut(s) 125, 307
AluI AGCT 2 cut(s) 125, 307
AoxI GGCC 1 cut(s) 146
ApeKI GCWGC 1 cut(s) 184
ApoI RAATTY 1 cut(s) 105
BbvI GCAGC 1 cut(s) 171
BceAI ACGGC 1 cut(s) 53
BisI GCNGC 2 cut(s) 182, 185
BlsI GCNGC 2 cut(s) 183, 186
BmsI GCATC 4 cut(s) 12, 198, 233, 271
BsaJI CCNNGG 1 cut(s) 315
Bsc4I CCNNNNNNNGG 1 cut(s) 321
Bse118I RCCGGY 1 cut(s) 148
Bse3DI GCAATG 1 cut(s) 84
BseDI CCNNGG 1 cut(s) 315
BseGI GGATG 2 cut(s) 213, 248
BseLI CCNNNNNNNGG 1 cut(s) 321
BseMI GCAATG 1 cut(s) 84
BseMII CTCAG 2 cut(s) 55, 239
BseXI GCAGC 1 cut(s) 171
Bsh1236I CGCG 1 cut(s) 317
BshFI GGCC 1 cut(s) 148
BsiSI CCGG 1 cut(s) 149
BslI CCNNNNNNNGG 1 cut(s) 321
BsnI GGCC 1 cut(s) 148
Bsp143I GATC 4 cut(s) 175, 251, 285, 373
BspACI CCGC 3 cut(s) 182, 315, 317
BspANI GGCC 1 cut(s) 148
BspCNI CTCAG 2 cut(s) 54, 240
BspFNI CGCG 1 cut(s) 317
BsrDI GCAATG 1 cut(s) 84
BsrFI RCCGGY 1 cut(s) 148
BssAI RCCGGY 1 cut(s) 148
BssECI CCNNGG 1 cut(s) 315
BssMI GATC 4 cut(s) 175, 251, 285, 373
Bst6I CTCTTC 1 cut(s) 222
BstC8I GCNNGC 4 cut(s) 65, 119, 123, 150
BstDEI CTNAG 3 cut(s) 41, 248, 308
BstDSI CCRYGG 1 cut(s) 315
BstF5I GGATG 2 cut(s) 213, 248
BstFNI CGCG 1 cut(s) 317
BstKTI GATC 4 cut(s) 178, 254, 288, 376
BstMBI GATC 4 cut(s) 175, 251, 285, 373
BstMWI GCNNNNNNNGC 1 cut(s) 208
BstUI CGCG 1 cut(s) 317
BstV1I GCAGC 1 cut(s) 171
BsuRI GGCC 1 cut(s) 148
BtgI CCRYGG 1 cut(s) 315
BtsCI GGATG 2 cut(s) 213, 248
BtsIMutI CAGTG 1 cut(s) 49
Cac8I GCNNGC 4 cut(s) 65, 119, 123, 150
Cfr10I RCCGGY 1 cut(s) 148
Cfr42I CCGCGG 1 cut(s) 318
Csp6I GTAC 1 cut(s) 333
CviAII CATG 1 cut(s) 289
CviJI RGCY 8 cut(s) 40, 67, 125, 148, 307, 325, 355, 389
CviKI_1 RGCY 8 cut(s) 40, 67, 125, 148, 307, 325, 355, 389
CviQI GTAC 1 cut(s) 333
DdeI CTNAG 3 cut(s) 41, 248, 308
DpnI GATC 4 cut(s) 177, 253, 287, 375
DpnII GATC 4 cut(s) 175, 251, 285, 373
DraI TTTAAA 1 cut(s) 102
Eam1104I CTCTTC 1 cut(s) 222
EarI CTCTTC 1 cut(s) 222
FaeI CATG 1 cut(s) 292
FaiI YATR 4 cut(s) 235, 237, 266, 290
FatI CATG 1 cut(s) 288
Fnu4HI GCNGC 2 cut(s) 182, 185
FokI GGATG 2 cut(s) 220, 255
Fsp4HI GCNGC 2 cut(s) 182, 185
GluI GCNGC 2 cut(s) 182, 185
HaeIII GGCC 1 cut(s) 148
HapII CCGG 1 cut(s) 149
Hin1II CATG 1 cut(s) 292
HinfI GANTC 1 cut(s) 93
HpaII CCGG 1 cut(s) 149
Hpy188III TCNNGA 1 cut(s) 141
HpyAV CCTTC 1 cut(s) 138
HpyCH4V TGCA 2 cut(s) 47, 117
HpyF10VI GCNNNNNNNGC 1 cut(s) 208
HpyF3I CTNAG 3 cut(s) 41, 248, 308
Hsp92II CATG 1 cut(s) 292
KroI GCCGGC 1 cut(s) 148
KroNI GCCGGC 1 cut(s) 150
KspI CCGCGG 1 cut(s) 318
Kzo9I GATC 4 cut(s) 175, 251, 285, 373
LpnPI CCDG 8 cut(s) 44, 49, 103, 127, 154, 162, 170, 260
Lsp1109I GCAGC 1 cut(s) 171
LweI GCATC 4 cut(s) 12, 198, 233, 271
MalI GATC 4 cut(s) 177, 253, 287, 375
MboI GATC 4 cut(s) 175, 251, 285, 373
MboII GAAGA 3 cut(s) 232, 239, 383
MluCI AATT 2 cut(s) 69, 105
MlyI GAGTC 1 cut(s) 87
MnlI CCTC 2 cut(s) 223, 345
MroNI GCCGGC 1 cut(s) 148
MseI TTAA 2 cut(s) 101, 384
MspA1I CMGCKG 2 cut(s) 184, 317
MspI CCGG 1 cut(s) 149
MvnI CGCG 1 cut(s) 317
MwoI GCNNNNNNNGC 1 cut(s) 208
NaeI GCCGGC 1 cut(s) 150
NdeII GATC 4 cut(s) 175, 251, 285, 373
NgoMIV GCCGGC 1 cut(s) 148
NlaIII CATG 1 cut(s) 292
PdiI GCCGGC 1 cut(s) 150
PkrI GCNGC 2 cut(s) 183, 186
PleI GAGTC 1 cut(s) 87
PpsI GAGTC 1 cut(s) 87
RsaI GTAC 1 cut(s) 334
RsaNI GTAC 1 cut(s) 333
SacII CCGCGG 1 cut(s) 318
SaqAI TTAA 2 cut(s) 101, 384
SatI GCNGC 2 cut(s) 182, 185
Sau3AI GATC 4 cut(s) 175, 251, 285, 373
SchI GAGTC 1 cut(s) 87
SetI ASST 3 cut(s) 127, 159, 309
SfaNI GCATC 4 cut(s) 12, 198, 233, 271
Sfr303I CCGCGG 1 cut(s) 318
SgrBI CCGCGG 1 cut(s) 318
Sse9I AATT 2 cut(s) 69, 105
SsiI CCGC 3 cut(s) 182, 315, 317
SspI AATATT 2 cut(s) 51, 365
TasI AATT 2 cut(s) 69, 105
TauI GCSGC 1 cut(s) 184
Tru1I TTAA 2 cut(s) 101, 384
Tru9I TTAA 2 cut(s) 101, 384
TscAI CASTG 1 cut(s) 49
TseI GCWGC 1 cut(s) 184
TspDTI ATGAA 1 cut(s) 240
TspRI CASTG 1 cut(s) 49
XapI RAATTY 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.