Rw7G017920

N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0001436
Physical Location & Seq
Forward (+)
19065521 .. 19069543
4023 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G017920.1

Sequence Viewer

Length: 783 bp
ATGGCGTGGTTATTGATTATCTCTTCTGTGATTGTAATATGGATAGCTTCTCTGTTCAAAATTCTCCATGGTTCATACTCACCATCTAAGGGCGCTTTCTTGAATGATTCCAATAATGATGGCAGTGCCAAGAAGAGAAATGTGTTGGTTGTCGCTCACCCAGATGACGAGTCCATGTTCTTCACTCCAACAATAAACTACCTCACTTCGAGAGGGCATAATATTCACATCTTATGCTTGTCAATTGGTGATGCAGATGGTAAAGGAAATACTAGAAAAGAAGAGCTCTACAAGGCTTCTGCAATCCTCAAGGTTCCACATCAACAAGTGAAGATTCTGGACCATCCAGATCTTCAGGATGGTTTTGGCAAGGTGTGGAATCACAATTTATTGGCAAAGATTATTGAAGAGGAAGTCCTAAGTCAGCGCATTGACTTGATAATCACTTTTGATAACTATGGAGTTTCGGGACACTGTAACCATTGTGACATACATTATGGAGTAAGGAAGCTTTTACTTGCATCGTCACAGTGGAATGTTGAAGCCTGGGAACTTGTCAGTACTAACATATTCCGCAAGTATAGTGGACCAGTGGATATATGGTTCTCCAATTTATATTTTATGCAATGCTCAAATGAAATGTTGCATTGCTTGGTAAACGAGCAGCCCCGAAAGAGTTTCCTCGCGATGGCACAACATGCAAGCCAGTGGGTTTGGTTTCGCAAGCTTTTTGTGGCATTTTCGAGCTGCACCTATGTGAATACGCTTAGAAAGATGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00563 ko01100 map00563 map01100
Pfam Domains
Protein Families
PIG-L

Protein Analysis

260

Amino Acids

29.73

Weight (kDa)

8.47

Isoelectric Point (pI)

42.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PIG-L PF02585 49 - 170 9.2e-23 GlcNAc-PI de-N-acetylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 686
AciI CCGC 1 cut(s) 574
AcsI RAATTY 1 cut(s) 60
AcuI CTGAAG 1 cut(s) 338
AfaI GTAC 1 cut(s) 562
AfiI CCNNNNNNNGG 2 cut(s) 89, 688
AgsI TTSAA 4 cut(s) 58, 103, 407, 542
AjnI CCWGG 1 cut(s) 545
AleI CACNNNNGTG 1 cut(s) 755
AloI GAACNNNNNNTCC 2 cut(s) 587, 619
AluBI AGCT 5 cut(s) 47, 286, 511, 727, 747
AluI AGCT 5 cut(s) 47, 286, 511, 727, 747
Alw21I GWGCWC 1 cut(s) 288
ApeKI GCWGC 2 cut(s) 664, 747
ApoI RAATTY 1 cut(s) 60
AspLEI GCGC 2 cut(s) 95, 429
AspS9I GGNCC 2 cut(s) 340, 587
AsuHPI GGTGA 3 cut(s) 72, 149, 260
AvaII GGWCC 2 cut(s) 340, 587
BanII GRGCYC 1 cut(s) 288
Bbv12I GWGCWC 1 cut(s) 288
BbvI GCAGC 2 cut(s) 676, 734
BccI CCATC 6 cut(s) 91, 113, 251, 351, 353, 682
BciT130I CCWGG 1 cut(s) 547
BfaI CTAG 1 cut(s) 273
BfoI RGCGCY 1 cut(s) 96
BglII AGATCT 1 cut(s) 349
BisI GCNGC 2 cut(s) 665, 748
BlsI GCNGC 2 cut(s) 666, 749
BmcAI AGTACT 1 cut(s) 562
Bme1390I CCNGG 1 cut(s) 547
Bme18I GGWCC 2 cut(s) 340, 587
BmgT120I GGNCC 2 cut(s) 340, 587
BmiI GGNNCC 1 cut(s) 315
BmrFI CCNGG 1 cut(s) 547
BmsI GCATC 2 cut(s) 241, 530
BpuEI CTTGAG 1 cut(s) 293
BsaJI CCNNGG 2 cut(s) 67, 546
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 688
Bse1I ACTGG 2 cut(s) 590, 706
Bse3DI GCAATG 2 cut(s) 632, 646
BseBI CCWGG 1 cut(s) 547
BseDI CCNNGG 2 cut(s) 67, 546
BseGI GGATG 2 cut(s) 343, 364
BseLI CCNNNNNNNGG 2 cut(s) 89, 688
BseMI GCAATG 2 cut(s) 632, 646
BseNI ACTGG 2 cut(s) 590, 706
BseXI GCAGC 2 cut(s) 676, 734
BsgI GTGCAG 1 cut(s) 733
Bsh1236I CGCG 1 cut(s) 686
BsiHKAI GWGCWC 1 cut(s) 288
BslFI GGGAC 1 cut(s) 483
BslI CCNNNNNNNGG 2 cut(s) 89, 688
BsmFI GGGAC 1 cut(s) 483
Bsp1286I GDGCHC 1 cut(s) 288
Bsp143I GATC 1 cut(s) 349
Bsp19I CCATGG 1 cut(s) 67
Bsp68I TCGCGA 1 cut(s) 686
BspACI CCGC 1 cut(s) 574
BspFNI CGCG 1 cut(s) 686
BspLI GGNNCC 1 cut(s) 315
BspQI GCTCTTC 1 cut(s) 276
BsrDI GCAATG 2 cut(s) 632, 646
BsrI ACTGG 2 cut(s) 590, 706
BssECI CCNNGG 2 cut(s) 67, 546
BssMI GATC 1 cut(s) 349
BssT1I CCWWGG 1 cut(s) 67
Bst2UI CCWGG 1 cut(s) 547
Bst4CI ACNGT 2 cut(s) 476, 531
Bst6I CTCTTC 4 cut(s) 28, 128, 276, 402
BstAPI GCANNNNNTGC 1 cut(s) 698
BstC8I GCNNGC 2 cut(s) 703, 725
BstDEI CTNAG 3 cut(s) 87, 419, 767
BstDSI CCRYGG 1 cut(s) 67
BstF5I GGATG 2 cut(s) 343, 364
BstFNI CGCG 1 cut(s) 686
BstH2I RGCGCY 1 cut(s) 96
BstHHI GCGC 2 cut(s) 95, 429
BstKTI GATC 1 cut(s) 352
BstMBI GATC 1 cut(s) 349
BstMWI GCNNNNNNNGC 1 cut(s) 698
BstNI CCWGG 1 cut(s) 547
BstNSI RCATGY 1 cut(s) 701
BstSCI CCNGG 1 cut(s) 545
BstUI CGCG 1 cut(s) 686
BstV1I GCAGC 2 cut(s) 676, 734
BstX2I RGATCY 1 cut(s) 349
BstYI RGATCY 1 cut(s) 349
BtgI CCRYGG 1 cut(s) 67
BtgZI GCGATG 1 cut(s) 701
BtsCI GGATG 2 cut(s) 343, 364
BtsI GCAGTG 1 cut(s) 130
BtsIMutI CAGTG 5 cut(s) 130, 472, 536, 597, 713
BtuMI TCGCGA 1 cut(s) 686
Cac8I GCNNGC 2 cut(s) 703, 725
CfoI GCGC 2 cut(s) 95, 429
Cfr13I GGNCC 2 cut(s) 340, 587
Csp6I GTAC 1 cut(s) 561
CspCI CAANNNNNGTGG 2 cut(s) 565, 600
CviAII CATG 3 cut(s) 68, 175, 698
CviJI RGCY 9 cut(s) 47, 286, 296, 511, 545, 667, 705, 727, 747
CviKI_1 RGCY 9 cut(s) 47, 286, 296, 511, 545, 667, 705, 727, 747
CviQI GTAC 1 cut(s) 561
DdeI CTNAG 3 cut(s) 87, 419, 767
DpnI GATC 1 cut(s) 351
DpnII GATC 1 cut(s) 349
Eam1104I CTCTTC 4 cut(s) 28, 128, 276, 402
EarI CTCTTC 4 cut(s) 28, 128, 276, 402
Ecl136II GAGCTC 1 cut(s) 286
Eco130I CCWWGG 1 cut(s) 67
Eco24I GRGCYC 1 cut(s) 288
Eco47I GGWCC 2 cut(s) 340, 587
Eco53kI GAGCTC 1 cut(s) 286
Eco57I CTGAAG 1 cut(s) 338
EcoICRI GAGCTC 1 cut(s) 286
EcoRII CCWGG 1 cut(s) 545
EcoT14I CCWWGG 1 cut(s) 67
EcoT38I GRGCYC 1 cut(s) 288
ErhI CCWWGG 1 cut(s) 67
FaeI CATG 3 cut(s) 71, 178, 701
FaqI GGGAC 1 cut(s) 483
FatI CATG 3 cut(s) 67, 174, 697
Fnu4HI GCNGC 2 cut(s) 665, 748
FokI GGATG 2 cut(s) 330, 371
FriOI GRGCYC 1 cut(s) 288
Fsp4HI GCNGC 2 cut(s) 665, 748
FspBI CTAG 1 cut(s) 273
GlaI GCGC 2 cut(s) 94, 428
GluI GCNGC 2 cut(s) 665, 748
HaeII RGCGCY 1 cut(s) 96
HhaI GCGC 2 cut(s) 95, 429
Hin1II CATG 3 cut(s) 71, 178, 701
Hin6I GCGC 2 cut(s) 93, 427
HinP1I GCGC 2 cut(s) 93, 427
HindIII AAGCTT 2 cut(s) 509, 725
HinfI GANTC 4 cut(s) 107, 170, 334, 379
HphI GGTGA 3 cut(s) 72, 149, 260
Hpy166II GTNNAC 2 cut(s) 587, 658
Hpy188III TCNNGA 7 cut(s) 100, 210, 338, 347, 356, 468, 685
Hpy8I GTNNAC 2 cut(s) 587, 658
HpyCH4III ACNGT 2 cut(s) 476, 531
HpyCH4V TGCA 7 cut(s) 254, 302, 521, 625, 646, 701, 750
HpyF10VI GCNNNNNNNGC 1 cut(s) 698
HpyF3I CTNAG 3 cut(s) 87, 419, 767
Hsp92II CATG 3 cut(s) 71, 178, 701
HspAI GCGC 2 cut(s) 93, 427
Kzo9I GATC 1 cut(s) 349
LguI GCTCTTC 1 cut(s) 276
LpnPI CCDG 8 cut(s) 174, 323, 341, 360, 532, 559, 603, 719
Lsp1109I GCAGC 2 cut(s) 676, 734
LweI GCATC 2 cut(s) 241, 530
MaeI CTAG 1 cut(s) 273
MaeIII GTNAC 3 cut(s) 476, 485, 525
MalI GATC 1 cut(s) 351
MboI GATC 1 cut(s) 349
MboII GAAGA 7 cut(s) 15, 145, 172, 293, 343, 344, 419
MfeI CAATTG 1 cut(s) 243
MflI RGATCY 1 cut(s) 349
MhlI GDGCHC 1 cut(s) 288
MluCI AATT 4 cut(s) 60, 243, 385, 610
MlyI GAGTC 1 cut(s) 179
MmeI TCCRAC 1 cut(s) 212
MnlI CCTC 5 cut(s) 206, 212, 317, 403, 692
MslI CAYNNNNRTG 2 cut(s) 162, 755
MspR9I CCNGG 1 cut(s) 547
MunI CAATTG 1 cut(s) 243
MvaI CCWGG 1 cut(s) 547
MvnI CGCG 1 cut(s) 686
MwoI GCNNNNNNNGC 1 cut(s) 698
NcoI CCATGG 1 cut(s) 67
NdeII GATC 1 cut(s) 349
NlaIII CATG 3 cut(s) 71, 178, 701
NlaIV GGNNCC 1 cut(s) 315
NmuCI GTSAC 2 cut(s) 485, 525
NruI TCGCGA 1 cut(s) 686
NspI RCATGY 1 cut(s) 701
OliI CACNNNNGTG 1 cut(s) 755
PciSI GCTCTTC 1 cut(s) 276
PfeI GAWTC 3 cut(s) 107, 334, 379
PkrI GCNGC 2 cut(s) 666, 749
PleI GAGTC 1 cut(s) 178
PpsI GAGTC 1 cut(s) 178
Psp124BI GAGCTC 1 cut(s) 288
Psp6I CCWGG 1 cut(s) 545
PspGI CCWGG 1 cut(s) 545
PspN4I GGNNCC 1 cut(s) 315
PspPI GGNCC 2 cut(s) 340, 587
PsuI RGATCY 1 cut(s) 349
RruI TCGCGA 1 cut(s) 686
RsaI GTAC 1 cut(s) 562
RsaNI GTAC 1 cut(s) 561
RseI CAYNNNNRTG 2 cut(s) 162, 755
SacI GAGCTC 1 cut(s) 288
SapI GCTCTTC 1 cut(s) 276
SatI GCNGC 2 cut(s) 665, 748
Sau3AI GATC 1 cut(s) 349
Sau96I GGNCC 2 cut(s) 340, 587
ScaI AGTACT 1 cut(s) 562
SchI GAGTC 1 cut(s) 179
ScrFI CCNGG 1 cut(s) 547
SduI GDGCHC 1 cut(s) 288
SetI ASST 9 cut(s) 49, 204, 288, 315, 375, 513, 729, 749, 755
SfaNI GCATC 2 cut(s) 241, 530
SinI GGWCC 2 cut(s) 340, 587
SmiMI CAYNNNNRTG 2 cut(s) 162, 755
SmlI CTYRAG 1 cut(s) 308
SmoI CTYRAG 1 cut(s) 308
Sse9I AATT 4 cut(s) 60, 243, 385, 610
SsiI CCGC 1 cut(s) 574
SspI AATATT 1 cut(s) 223
SspMI CTAG 1 cut(s) 273
SstI GAGCTC 1 cut(s) 288
StyD4I CCNGG 1 cut(s) 545
StyI CCWWGG 1 cut(s) 67
TaaI ACNGT 2 cut(s) 476, 531
TaqI TCGA 2 cut(s) 209, 743
TasI AATT 4 cut(s) 60, 243, 385, 610
TatI WGTACW 1 cut(s) 560
TfiI GAWTC 3 cut(s) 107, 334, 379
TscAI CASTG 5 cut(s) 130, 479, 536, 597, 713
TseFI GTSAC 2 cut(s) 485, 525
TseI GCWGC 2 cut(s) 664, 747
Tsp45I GTSAC 2 cut(s) 485, 525
TspDTI ATGAA 2 cut(s) 63, 651
TspRI CASTG 5 cut(s) 130, 479, 536, 597, 713
VpaK11BI GGWCC 2 cut(s) 340, 587
XapI RAATTY 1 cut(s) 60
XceI RCATGY 1 cut(s) 701
XcmI CCANNNNNNNNNTGG 1 cut(s) 597
XspI CTAG 1 cut(s) 273
ZrmI AGTACT 1 cut(s) 562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.