RchiOBHm_Chr7g0204241

N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001436
Physical Location & Seq
Reverse (-)
21806282 .. 21811115
4834 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18279

Sequence Viewer

Length: 366 bp
ATGGCGTGGTTATTAATTATCTCTTCTATGATTGTAATATGGATAGCTTTTCTGTTCAAAATTCTCCATGGTGCATACTCACCTTCCAAGGGTGCTTTCGTGAATGATTCTCATAATGGTGGCAGTGCCAAGAAGAGAAATGTGTTGCTGGTTGTTTACCACCCAAATGATGAGTCCATGTTCTTCGCTCCAACAATAAACTACCTCACTTTGAGAGGACATTATGTTCACATCTTATGCTTGTCAATTGTTCCTCATGCTGGCTTTGGATTGAGTTTTGAAAGGCTTGTAAAGTTTGCAACTGGGATTGAGAATATCAGAGATGTGATTCCTTTCCCACAGACACCTAGTTCATCAGAATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00563 ko01100 map00563 map01100
Pfam Domains
Protein Families
PIG-L

Protein Analysis

121

Amino Acids

13.54

Weight (kDa)

8.86

Isoelectric Point (pI)

53.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_2 PF00152 73 - 115 3.2e-10 tRNA synthetases class II (D, K and N)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 60, 359
AfiI CCNNNNNNNGG 2 cut(s) 89, 260
AgsI TTSAA 2 cut(s) 58, 281
AjuI GAANNNNNNNTTGG 2 cut(s) 80, 112
AloI GAACNNNNNNTCC 2 cut(s) 210, 242
AluBI AGCT 1 cut(s) 47
AluI AGCT 1 cut(s) 47
ApoI RAATTY 2 cut(s) 60, 359
ArsI GACNNNNNNTTYG 2 cut(s) 158, 190
AseI ATTAAT 1 cut(s) 14
AsuHPI GGTGA 1 cut(s) 72
BfaI CTAG 1 cut(s) 348
BmrI ACTGGG 1 cut(s) 312
BmuI ACTGGG 1 cut(s) 312
BsaJI CCNNGG 2 cut(s) 67, 87
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 260
Bse1I ACTGG 1 cut(s) 307
BseDI CCNNGG 2 cut(s) 67, 87
BseLI CCNNNNNNNGG 2 cut(s) 89, 260
BseNI ACTGG 1 cut(s) 307
BslI CCNNNNNNNGG 2 cut(s) 89, 260
Bsp19I CCATGG 1 cut(s) 67
BsrI ACTGG 1 cut(s) 307
BssECI CCNNGG 2 cut(s) 67, 87
BssT1I CCWWGG 2 cut(s) 67, 87
Bst6I CTCTTC 2 cut(s) 28, 128
BstC8I GCNNGC 1 cut(s) 262
BstDSI CCRYGG 1 cut(s) 67
BtgI CCRYGG 1 cut(s) 67
BtsI GCAGTG 1 cut(s) 130
BtsIMutI CAGTG 1 cut(s) 130
Cac8I GCNNGC 1 cut(s) 262
CviAII CATG 3 cut(s) 68, 178, 257
CviJI RGCY 3 cut(s) 47, 264, 286
CviKI_1 RGCY 3 cut(s) 47, 264, 286
Eam1104I CTCTTC 2 cut(s) 28, 128
EarI CTCTTC 2 cut(s) 28, 128
Eco130I CCWWGG 2 cut(s) 67, 87
EcoT14I CCWWGG 2 cut(s) 67, 87
ErhI CCWWGG 2 cut(s) 67, 87
FaeI CATG 3 cut(s) 71, 181, 260
FaiI YATR 9 cut(s) 29, 40, 69, 76, 114, 179, 225, 238, 258
FatI CATG 3 cut(s) 67, 177, 256
FspBI CTAG 1 cut(s) 348
Hin1II CATG 3 cut(s) 71, 181, 260
HinfI GANTC 3 cut(s) 107, 173, 328
HphI GGTGA 1 cut(s) 72
Hpy166II GTNNAC 2 cut(s) 157, 229
Hpy188I TCNGA 2 cut(s) 320, 358
Hpy188III TCNNGA 1 cut(s) 100
Hpy8I GTNNAC 2 cut(s) 157, 229
HpyAV CCTTC 1 cut(s) 93
HpyCH4V TGCA 2 cut(s) 74, 299
Hsp92II CATG 3 cut(s) 71, 181, 260
LmnI GCTCC 1 cut(s) 193
LpnPI CCDG 3 cut(s) 134, 246, 288
MaeI CTAG 1 cut(s) 348
MboII GAAGA 3 cut(s) 15, 145, 175
MfeI CAATTG 1 cut(s) 246
MluCI AATT 4 cut(s) 15, 60, 246, 359
MlyI GAGTC 1 cut(s) 182
MmeI TCCRAC 1 cut(s) 215
MnlI CCTC 3 cut(s) 209, 215, 264
MseI TTAA 2 cut(s) 14, 364
MslI CAYNNNNRTG 2 cut(s) 117, 165
MunI CAATTG 1 cut(s) 246
NcoI CCATGG 1 cut(s) 67
NlaIII CATG 3 cut(s) 71, 181, 260
PfeI GAWTC 2 cut(s) 107, 328
PleI GAGTC 1 cut(s) 181
PpsI GAGTC 1 cut(s) 181
PshBI ATTAAT 1 cut(s) 14
RseI CAYNNNNRTG 2 cut(s) 117, 165
SaqAI TTAA 2 cut(s) 14, 364
SchI GAGTC 1 cut(s) 182
SetI ASST 4 cut(s) 49, 85, 207, 349
SmiMI CAYNNNNRTG 2 cut(s) 117, 165
Sse9I AATT 4 cut(s) 15, 60, 246, 359
SspMI CTAG 1 cut(s) 348
StyI CCWWGG 2 cut(s) 67, 87
TasI AATT 4 cut(s) 15, 60, 246, 359
TfiI GAWTC 2 cut(s) 107, 328
Tru1I TTAA 2 cut(s) 14, 364
Tru9I TTAA 2 cut(s) 14, 364
TscAI CASTG 1 cut(s) 130
TspDTI ATGAA 1 cut(s) 342
TspRI CASTG 1 cut(s) 130
VspI ATTAAT 1 cut(s) 14
XapI RAATTY 2 cut(s) 60, 359
XspI CTAG 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.