Rw7G017890

N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0001436
Physical Location & Seq
Forward (+)
19036316 .. 19040278
3963 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G017890.1

Sequence Viewer

Length: 786 bp
ATGGCGTGGTTATTAATTATCTCTTCTGTGATTGTAATATGGATAGCATCTCTGTTCAAAATTCTCCATGGTTCATACTCACCTTCCAAGGGCGCTTTCTTGAATGATTCTAATAATGGTGGCAGTGCCAAGAAGAGAAATGTGTTGCTGGTTGTTGCCCACCCAGATGATGAGTCCATGTTCTTCACTCCAACAATAAACTACCTCACTTTGAGAGGGCATTATATTCACATCTTATGCTTGTCAATTGGTGATGCAGATGGTAAAGGAAATACTAGAAAAGAAGAGCTCTACCAGGCTTCTGCAACCCTCAAGGTTGCGCATCAACATGTGAAAATTCTGGACCATCCAGATCTTCAGGATGGTTTTGGTAAGGTGTGGAATCACAATTTATTGGCAAAGATTATTGAAGAGGAAGTCGTAAGTCAGGGCATTGACTTGATAATTACTTTTGATAATTATGGAGTTTCGGGACACTGTAACCATTGTGACGTGCATTACGGAGTAAGGAAGCTTTTACTTGCATCGTCACAGAGGAATGTTGAAGCCTGGGAACTTGTCAGTACTAACATATTCCGCAAGTATAGTGGACCAGTGGATATATGGTTCTCCAATTTATATTCTATGCAATGCTCAAATGAAATGTTGCATTGCTTGGTAAATGAGCAACCCAGAAAGAGCTTCCTGGCGATGGCACAACATGCAAGCCAATGGGTTTGGTTTCGCAAGCTTTTTGTGGCATTTTCCAGTTGTACCTATGTGAACACGCTTAGAAAGATGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00563 ko01100 map00563 map01100
Pfam Domains
Protein Families
PIG-L

Protein Analysis

261

Amino Acids

29.62

Weight (kDa)

8.47

Isoelectric Point (pI)

38.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PIG-L PF02585 49 - 171 6.7e-21 GlcNAc-PI de-N-acetylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 321
AciI CCGC 1 cut(s) 577
AcsI RAATTY 2 cut(s) 60, 336
AcuI CTGAAG 1 cut(s) 341
AfaI GTAC 2 cut(s) 565, 754
AfiI CCNNNNNNNGG 2 cut(s) 89, 691
AflIII ACRYGT 1 cut(s) 328
AgsI TTSAA 4 cut(s) 58, 103, 410, 545
AjiI CACGTC 1 cut(s) 493
AjnI CCWGG 3 cut(s) 294, 548, 684
AjuI GAANNNNNNNTTGG 2 cut(s) 80, 112
AloI GAACNNNNNNTCC 2 cut(s) 590, 622
AluBI AGCT 4 cut(s) 289, 514, 681, 730
AluI AGCT 4 cut(s) 289, 514, 681, 730
Alw21I GWGCWC 1 cut(s) 291
ApoI RAATTY 2 cut(s) 60, 336
AseI ATTAAT 1 cut(s) 14
AspLEI GCGC 2 cut(s) 95, 322
AspS9I GGNCC 2 cut(s) 343, 590
AsuHPI GGTGA 2 cut(s) 72, 263
AvaII GGWCC 2 cut(s) 343, 590
BanII GRGCYC 1 cut(s) 291
Bbv12I GWGCWC 1 cut(s) 291
BccI CCATC 4 cut(s) 254, 354, 356, 685
BciT130I CCWGG 3 cut(s) 296, 550, 686
BfaI CTAG 1 cut(s) 276
BfoI RGCGCY 1 cut(s) 96
BglII AGATCT 1 cut(s) 352
BmcAI AGTACT 1 cut(s) 565
Bme1390I CCNGG 3 cut(s) 296, 550, 686
Bme18I GGWCC 2 cut(s) 343, 590
BmgBI CACGTC 1 cut(s) 493
BmgT120I GGNCC 2 cut(s) 343, 590
BmrFI CCNGG 3 cut(s) 296, 550, 686
BmsI GCATC 4 cut(s) 56, 244, 331, 533
BpuEI CTTGAG 1 cut(s) 296
BsaJI CCNNGG 3 cut(s) 67, 87, 549
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 691
Bse1I ACTGG 2 cut(s) 593, 747
Bse3DI GCAATG 2 cut(s) 635, 649
BseBI CCWGG 3 cut(s) 296, 550, 686
BseDI CCNNGG 3 cut(s) 67, 87, 549
BseGI GGATG 2 cut(s) 346, 367
BseLI CCNNNNNNNGG 2 cut(s) 89, 691
BseMI GCAATG 2 cut(s) 635, 649
BseNI ACTGG 2 cut(s) 593, 747
BsiHKAI GWGCWC 1 cut(s) 291
BslFI GGGAC 1 cut(s) 486
BslI CCNNNNNNNGG 2 cut(s) 89, 691
BsmFI GGGAC 1 cut(s) 486
Bsp1286I GDGCHC 1 cut(s) 291
Bsp143I GATC 1 cut(s) 352
Bsp19I CCATGG 1 cut(s) 67
BspACI CCGC 1 cut(s) 577
BspQI GCTCTTC 1 cut(s) 279
BsrDI GCAATG 2 cut(s) 635, 649
BsrI ACTGG 2 cut(s) 593, 747
BssECI CCNNGG 3 cut(s) 67, 87, 549
BssMI GATC 1 cut(s) 352
BssT1I CCWWGG 2 cut(s) 67, 87
Bst2UI CCWGG 3 cut(s) 296, 550, 686
Bst4CI ACNGT 1 cut(s) 479
Bst6I CTCTTC 4 cut(s) 28, 128, 279, 405
BstAPI GCANNNNNTGC 1 cut(s) 701
BstC8I GCNNGC 2 cut(s) 706, 728
BstDEI CTNAG 1 cut(s) 770
BstDSI CCRYGG 1 cut(s) 67
BstF5I GGATG 2 cut(s) 346, 367
BstH2I RGCGCY 1 cut(s) 96
BstHHI GCGC 2 cut(s) 95, 322
BstKTI GATC 1 cut(s) 355
BstMBI GATC 1 cut(s) 352
BstMWI GCNNNNNNNGC 1 cut(s) 701
BstNI CCWGG 3 cut(s) 296, 550, 686
BstNSI RCATGY 2 cut(s) 332, 704
BstSCI CCNGG 3 cut(s) 294, 548, 684
BstX2I RGATCY 1 cut(s) 352
BstYI RGATCY 1 cut(s) 352
BtgI CCRYGG 1 cut(s) 67
BtgZI GCGATG 1 cut(s) 704
BtrI CACGTC 1 cut(s) 493
BtsCI GGATG 2 cut(s) 346, 367
BtsI GCAGTG 1 cut(s) 130
BtsIMutI CAGTG 3 cut(s) 130, 475, 600
Cac8I GCNNGC 2 cut(s) 706, 728
CfoI GCGC 2 cut(s) 95, 322
Cfr13I GGNCC 2 cut(s) 343, 590
Csp6I GTAC 2 cut(s) 564, 753
CspCI CAANNNNNGTGG 2 cut(s) 568, 603
CviAII CATG 4 cut(s) 68, 178, 329, 701
CviJI RGCY 7 cut(s) 289, 299, 514, 548, 681, 708, 730
CviKI_1 RGCY 7 cut(s) 289, 299, 514, 548, 681, 708, 730
CviQI GTAC 2 cut(s) 564, 753
DdeI CTNAG 1 cut(s) 770
DpnI GATC 1 cut(s) 354
DpnII GATC 1 cut(s) 352
Eam1104I CTCTTC 4 cut(s) 28, 128, 279, 405
EarI CTCTTC 4 cut(s) 28, 128, 279, 405
Ecl136II GAGCTC 1 cut(s) 289
Eco130I CCWWGG 2 cut(s) 67, 87
Eco24I GRGCYC 1 cut(s) 291
Eco47I GGWCC 2 cut(s) 343, 590
Eco53kI GAGCTC 1 cut(s) 289
Eco57I CTGAAG 1 cut(s) 341
EcoICRI GAGCTC 1 cut(s) 289
EcoRII CCWGG 3 cut(s) 294, 548, 684
EcoT14I CCWWGG 2 cut(s) 67, 87
EcoT38I GRGCYC 1 cut(s) 291
ErhI CCWWGG 2 cut(s) 67, 87
FaeI CATG 4 cut(s) 71, 181, 332, 704
FaqI GGGAC 1 cut(s) 486
FatI CATG 4 cut(s) 67, 177, 328, 700
FokI GGATG 2 cut(s) 333, 374
FriOI GRGCYC 1 cut(s) 291
FspBI CTAG 1 cut(s) 276
FspI TGCGCA 1 cut(s) 321
GlaI GCGC 2 cut(s) 94, 321
HaeII RGCGCY 1 cut(s) 96
HhaI GCGC 2 cut(s) 95, 322
Hin1II CATG 4 cut(s) 71, 181, 332, 704
Hin6I GCGC 2 cut(s) 93, 320
HinP1I GCGC 2 cut(s) 93, 320
HindIII AAGCTT 2 cut(s) 512, 728
HinfI GANTC 3 cut(s) 107, 173, 382
HphI GGTGA 2 cut(s) 72, 263
Hpy166II GTNNAC 2 cut(s) 590, 763
Hpy188III TCNNGA 5 cut(s) 100, 341, 350, 359, 471
Hpy8I GTNNAC 2 cut(s) 590, 763
HpyAV CCTTC 1 cut(s) 93
HpyCH4III ACNGT 1 cut(s) 479
HpyCH4IV ACGT 1 cut(s) 492
HpyCH4V TGCA 7 cut(s) 257, 305, 496, 524, 628, 649, 704
HpyF10VI GCNNNNNNNGC 1 cut(s) 701
HpyF3I CTNAG 1 cut(s) 770
HpySE526I ACGT 1 cut(s) 492
Hsp92II CATG 4 cut(s) 71, 181, 332, 704
HspAI GCGC 2 cut(s) 93, 320
Kzo9I GATC 1 cut(s) 352
LguI GCTCTTC 1 cut(s) 279
LweI GCATC 4 cut(s) 56, 244, 331, 533
MaeI CTAG 1 cut(s) 276
MaeII ACGT 1 cut(s) 492
MaeIII GTNAC 3 cut(s) 479, 488, 528
MalI GATC 1 cut(s) 354
MboI GATC 1 cut(s) 352
MboII GAAGA 6 cut(s) 15, 145, 175, 296, 347, 422
MfeI CAATTG 1 cut(s) 246
MflI RGATCY 1 cut(s) 352
MhlI GDGCHC 1 cut(s) 291
MluCI AATT 8 cut(s) 15, 60, 246, 336, 388, 444, 457, 613
MlyI GAGTC 1 cut(s) 182
MmeI TCCRAC 1 cut(s) 215
MnlI CCTC 5 cut(s) 209, 215, 320, 406, 528
MseI TTAA 1 cut(s) 14
MslI CAYNNNNRTG 2 cut(s) 165, 327
MspR9I CCNGG 3 cut(s) 296, 550, 686
MunI CAATTG 1 cut(s) 246
MvaI CCWGG 3 cut(s) 296, 550, 686
MwoI GCNNNNNNNGC 1 cut(s) 701
NcoI CCATGG 1 cut(s) 67
NdeII GATC 1 cut(s) 352
NlaIII CATG 4 cut(s) 71, 181, 332, 704
NmuCI GTSAC 2 cut(s) 488, 528
NsbI TGCGCA 1 cut(s) 321
NspI RCATGY 2 cut(s) 332, 704
PciI ACATGT 1 cut(s) 328
PciSI GCTCTTC 1 cut(s) 279
PfeI GAWTC 2 cut(s) 107, 382
PleI GAGTC 1 cut(s) 181
PpsI GAGTC 1 cut(s) 181
PscI ACATGT 1 cut(s) 328
PshBI ATTAAT 1 cut(s) 14
Psp124BI GAGCTC 1 cut(s) 291
Psp6I CCWGG 3 cut(s) 294, 548, 684
PspGI CCWGG 3 cut(s) 294, 548, 684
PspPI GGNCC 2 cut(s) 343, 590
PsuI RGATCY 1 cut(s) 352
RsaI GTAC 2 cut(s) 565, 754
RsaNI GTAC 2 cut(s) 564, 753
RseI CAYNNNNRTG 2 cut(s) 165, 327
SacI GAGCTC 1 cut(s) 291
SapI GCTCTTC 1 cut(s) 279
SaqAI TTAA 1 cut(s) 14
Sau3AI GATC 1 cut(s) 352
Sau96I GGNCC 2 cut(s) 343, 590
ScaI AGTACT 1 cut(s) 565
SchI GAGTC 1 cut(s) 182
ScrFI CCNGG 3 cut(s) 296, 550, 686
SduI GDGCHC 1 cut(s) 291
SfaNI GCATC 4 cut(s) 56, 244, 331, 533
SinI GGWCC 2 cut(s) 343, 590
SmiMI CAYNNNNRTG 2 cut(s) 165, 327
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
Sse9I AATT 8 cut(s) 15, 60, 246, 336, 388, 444, 457, 613
SsiI CCGC 1 cut(s) 577
SspMI CTAG 1 cut(s) 276
SstI GAGCTC 1 cut(s) 291
StyD4I CCNGG 3 cut(s) 294, 548, 684
StyI CCWWGG 2 cut(s) 67, 87
TaaI ACNGT 1 cut(s) 479
TaiI ACGT 1 cut(s) 495
TasI AATT 8 cut(s) 15, 60, 246, 336, 388, 444, 457, 613
TatI WGTACW 1 cut(s) 563
TfiI GAWTC 2 cut(s) 107, 382
Tru1I TTAA 1 cut(s) 14
Tru9I TTAA 1 cut(s) 14
TscAI CASTG 3 cut(s) 130, 482, 600
TseFI GTSAC 2 cut(s) 488, 528
Tsp45I GTSAC 2 cut(s) 488, 528
TspDTI ATGAA 2 cut(s) 63, 654
TspGWI ACGGA 1 cut(s) 516
TspRI CASTG 3 cut(s) 130, 482, 600
VpaK11BI GGWCC 2 cut(s) 343, 590
VspI ATTAAT 1 cut(s) 14
XapI RAATTY 2 cut(s) 60, 336
XceI RCATGY 2 cut(s) 332, 704
XcmI CCANNNNNNNNNTGG 1 cut(s) 600
XspI CTAG 1 cut(s) 276
ZrmI AGTACT 1 cut(s) 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.