Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000571.1

Orthogroup ID

OG0001436

Physical Location & Seq

Genomic Coordinates Forward (+)

27305 .. 30219

Gene Structure 2915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000571.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

atgaaatgcctagagctggggcgacttgttacctccgagattataaatgcagcagttagtcttctcagggatccagagtcatctactttgtattacactacatgcttttcagatagagcaattaaggctgccaagaaaggaggtaatgatttattagaatttgctgccacagcaccaaagaggtttgctgctatattacaatatcgaaaaggccttaagaatggagaaaagatatttatccccatttatccccatcctggatccagattctaccccaaaccactggttcttcattgtgcatttgagatggcgtggttattaattatctcttctatgattgtaatatggatagcttttctgttcaaaattctccatggtgcatactcaccttccaagggtgctttcgtgaatgattctcataatggtggcagtgccaagaagagaaatgtgttgctggttgtttaccacccaaatgatgagtccatgttcttcgctccaacaataaactacctcacttcgagaggacattatgttcacatcttatgcttgtcaattgttcctcatgctggctttggattgagttttgaaaggcttgtaaagtttgcaactcggattgagaatatcagagatgtgattcctttcccacagacacctagttcatcagaattttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

PIG-L

Protein Analysis

223

Amino Acids

24.98

Weight (kDa)

9.45

Isoelectric Point (pI)

43.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27340 AT2G27340 AT2G27340 AT2G27340 AT2G27340 AT3G58130 AT3G58130
fragaria_vesca	FvH4_5g18940 FvH4_5g18940 FvH4_5g18940 FvH4_7g18930 FvH4_7g18930 FvH4_7g18930 FvH4_7g18930 FvH4_7g18930 FvH4_7g18930 FvH4_7g18930 FvH4_7g18930 FvH4_7g18930
malus_domestica	MD16G1270300.v1.1
prunus_persica	Prupe.5G069900_v2.0.a1
pyrus_communis	pycom16g23930
rosa_chinensis	RchiOBHm_Chr7g0203331 RchiOBHm_Chr7g0203411 RchiOBHm_Chr7g0204201 RchiOBHm_Chr7g0204241
rosa_laevigata	RLG00000003532 RLG00000003534
rosa_multiflora	Rmu_sc0000571.1_g000008 Rmu_sc0000571.1_g000010 Rmu_sc0001988.1_g000001 Rmu_sc0005723.1_g000004 Rmu_sc0019458.1_g000001
rosa_roxburghii	Rroxscaffold_3G00253860 Rroxscaffold_3G00253870
rosa_rugosa	Rorug07G0075700 Rorug07G0075700 Rorug07G0075900
rosa_samantha	Rh7BG204700 Rh7BG205000 Rh7BG205200 Rh7CG216500 Rh7CG216700 Rh7CG217400 Rh7CG217800 Rh7DG212200 Rh7DG212500 Rh7DG218300 Rh7DG218500
rosa_wichuraiana	Rw7G017890 Rw7G017920 Rw7G017940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	44
AclWI	GGATC	4 cut(s)	65, 78, 255, 268
AcsI	RAATTY	3 cut(s)	158, 366, 665
AfiI	CCNNNNNNNGG	4 cut(s)	16, 257, 395, 566
AflII	CTTAAG	1 cut(s)	215
AgsI	TTSAA	2 cut(s)	364, 587
AjnI	CCWGG	1 cut(s)	256
AjuI	GAANNNNNNNTTGG	2 cut(s)	386, 418
AloI	GAACNNNNNNTCC	2 cut(s)	516, 548
AluBI	AGCT	2 cut(s)	16, 353
AluI	AGCT	2 cut(s)	16, 353
AlwI	GGATC	4 cut(s)	65, 78, 255, 268
AoxI	GGCC	1 cut(s)	211
ApeKI	GCWGC	4 cut(s)	50, 128, 164, 188
ApoI	RAATTY	3 cut(s)	158, 366, 665
ArsI	GACNNNNNNTTYG	2 cut(s)	464, 496
AseI	ATTAAT	1 cut(s)	320
AsuHPI	GGTGA	1 cut(s)	378
BamHI	GGATCC	2 cut(s)	70, 260
BbsI	GAAGAC	1 cut(s)	53
BbvI	GCAGC	4 cut(s)	62, 115, 151, 175
BccI	CCATC	2 cut(s)	261, 301
BciT130I	CCWGG	1 cut(s)	258
BfaI	CTAG	2 cut(s)	11, 654
BfrI	CTTAAG	1 cut(s)	215
BisI	GCNGC	4 cut(s)	51, 129, 165, 189
BlsI	GCNGC	4 cut(s)	52, 130, 166, 190
Bme1390I	CCNGG	1 cut(s)	258
BmiI	GGNNCC	2 cut(s)	72, 262
BmrFI	CCNGG	1 cut(s)	258
BpiI	GAAGAC	1 cut(s)	53
BsaBI	GATNNNNATC	1 cut(s)	236
BsaJI	CCNNGG	2 cut(s)	373, 393
Bsc4I	CCNNNNNNNGG	4 cut(s)	16, 257, 395, 566
Bse1I	ACTGG	1 cut(s)	288
Bse8I	GATNNNNATC	1 cut(s)	236
BseBI	CCWGG	1 cut(s)	258
BseDI	CCNNGG	2 cut(s)	373, 393
BseGI	GGATG	1 cut(s)	253
BseJI	GATNNNNATC	1 cut(s)	236
BseLI	CCNNNNNNNGG	4 cut(s)	16, 257, 395, 566
BseMII	CTCAG	1 cut(s)	79
BseNI	ACTGG	1 cut(s)	288
BseXI	GCAGC	4 cut(s)	62, 115, 151, 175
BseYI	CCCAGC	1 cut(s)	16
BshFI	GGCC	1 cut(s)	213
BslI	CCNNNNNNNGG	4 cut(s)	16, 257, 395, 566
BsnI	GGCC	1 cut(s)	213
Bsp143I	GATC	2 cut(s)	70, 260
Bsp19I	CCATGG	1 cut(s)	373
BspANI	GGCC	1 cut(s)	213
BspCNI	CTCAG	1 cut(s)	78
BspLI	GGNNCC	2 cut(s)	72, 262
BspPI	GGATC	4 cut(s)	65, 78, 255, 268
BspTI	CTTAAG	1 cut(s)	215
BsrI	ACTGG	1 cut(s)	288
BssECI	CCNNGG	2 cut(s)	373, 393
BssMI	GATC	2 cut(s)	70, 260
BssT1I	CCWWGG	2 cut(s)	373, 393
Bst2UI	CCWGG	1 cut(s)	258
Bst6I	CTCTTC	2 cut(s)	334, 434
BstAFI	CTTAAG	1 cut(s)	215
BstC8I	GCNNGC	1 cut(s)	568
BstDEI	CTNAG	1 cut(s)	65
BstDSI	CCRYGG	1 cut(s)	373
BstF5I	GGATG	1 cut(s)	253
BstKTI	GATC	2 cut(s)	73, 263
BstMBI	GATC	2 cut(s)	70, 260
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 170
BstNI	CCWGG	1 cut(s)	258
BstNSI	RCATGY	1 cut(s)	105
BstSCI	CCNGG	1 cut(s)	256
BstV1I	GCAGC	4 cut(s)	62, 115, 151, 175
BstV2I	GAAGAC	1 cut(s)	53
BstX2I	RGATCY	2 cut(s)	70, 260
BstXI	CCANNNNNNTGG	1 cut(s)	283
BstYI	RGATCY	2 cut(s)	70, 260
BsuRI	GGCC	1 cut(s)	213
BtgI	CCRYGG	1 cut(s)	373
BtsCI	GGATG	1 cut(s)	253
BtsI	GCAGTG	1 cut(s)	436
BtsIMutI	CAGTG	2 cut(s)	281, 436
Cac8I	GCNNGC	1 cut(s)	568
CviAII	CATG	4 cut(s)	102, 374, 484, 563
CviJI	RGCY	6 cut(s)	16, 128, 213, 353, 570, 592
CviKI_1	RGCY	6 cut(s)	16, 128, 213, 353, 570, 592
DdeI	CTNAG	1 cut(s)	65
DpnI	GATC	2 cut(s)	72, 262
DpnII	GATC	2 cut(s)	70, 260
Eam1104I	CTCTTC	2 cut(s)	334, 434
EarI	CTCTTC	2 cut(s)	334, 434
Eco130I	CCWWGG	2 cut(s)	373, 393
Eco147I	AGGCCT	1 cut(s)	213
EcoRII	CCWGG	1 cut(s)	256
EcoT14I	CCWWGG	2 cut(s)	373, 393
ErhI	CCWWGG	2 cut(s)	373, 393
FaeI	CATG	4 cut(s)	105, 377, 487, 566
FatI	CATG	4 cut(s)	101, 373, 483, 562
Fnu4HI	GCNGC	4 cut(s)	51, 129, 165, 189
FokI	GGATG	1 cut(s)	240
Fsp4HI	GCNGC	4 cut(s)	51, 129, 165, 189
FspBI	CTAG	2 cut(s)	11, 654
GluI	GCNGC	4 cut(s)	51, 129, 165, 189
GsaI	CCCAGC	1 cut(s)	20
HaeIII	GGCC	1 cut(s)	213
Hin1II	CATG	4 cut(s)	105, 377, 487, 566
HinfI	GANTC	5 cut(s)	77, 267, 413, 479, 634
HphI	GGTGA	1 cut(s)	378
Hpy166II	GTNNAC	2 cut(s)	463, 535
Hpy188I	TCNGA	5 cut(s)	37, 112, 612, 626, 664
Hpy188III	TCNNGA	4 cut(s)	74, 264, 406, 519
Hpy8I	GTNNAC	2 cut(s)	463, 535
HpyAV	CCTTC	1 cut(s)	399
HpyCH4V	TGCA	4 cut(s)	50, 299, 380, 605
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 170
HpyF3I	CTNAG	1 cut(s)	65
Hsp92II	CATG	4 cut(s)	105, 377, 487, 566
Kzo9I	GATC	2 cut(s)	70, 260
LmnI	GCTCC	1 cut(s)	499
LpnPI	CCDG	9 cut(s)	2, 52, 87, 243, 269, 270, 277, 440, 552
Lsp1109I	GCAGC	4 cut(s)	62, 115, 151, 175
MaeI	CTAG	2 cut(s)	11, 654
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	2 cut(s)	72, 262
MboI	GATC	2 cut(s)	70, 260
MboII	GAAGA	5 cut(s)	53, 281, 321, 451, 481
MfeI	CAATTG	1 cut(s)	552
MflI	RGATCY	2 cut(s)	70, 260
MluCI	AATT	6 cut(s)	120, 158, 321, 366, 552, 665
MlyI	GAGTC	2 cut(s)	86, 488
MmeI	TCCRAC	1 cut(s)	521
MnlI	CCTC	6 cut(s)	43, 134, 174, 515, 521, 570
MseI	TTAA	4 cut(s)	123, 216, 320, 670
MslI	CAYNNNNRTG	2 cut(s)	423, 471
MspCI	CTTAAG	1 cut(s)	215
MspR9I	CCNGG	1 cut(s)	258
MunI	CAATTG	1 cut(s)	552
MvaI	CCWGG	1 cut(s)	258
MwoI	GCNNNNNNNGC	2 cut(s)	125, 170
NcoI	CCATGG	1 cut(s)	373
NdeII	GATC	2 cut(s)	70, 260
NlaIII	CATG	4 cut(s)	105, 377, 487, 566
NlaIV	GGNNCC	2 cut(s)	72, 262
NspI	RCATGY	1 cut(s)	105
PceI	AGGCCT	1 cut(s)	213
PfeI	GAWTC	3 cut(s)	267, 413, 634
PfoI	TCCNGGA	1 cut(s)	256
PkrI	GCNGC	4 cut(s)	52, 130, 166, 190
PleI	GAGTC	2 cut(s)	85, 487
PpsI	GAGTC	2 cut(s)	85, 487
PshBI	ATTAAT	1 cut(s)	320
PsiI	TTATAA	1 cut(s)	44
Psp6I	CCWGG	1 cut(s)	256
PspFI	CCCAGC	1 cut(s)	16
PspGI	CCWGG	1 cut(s)	256
PspN4I	GGNNCC	2 cut(s)	72, 262
PsuI	RGATCY	2 cut(s)	70, 260
RseI	CAYNNNNRTG	2 cut(s)	423, 471
SaqAI	TTAA	4 cut(s)	123, 216, 320, 670
SatI	GCNGC	4 cut(s)	51, 129, 165, 189
Sau3AI	GATC	2 cut(s)	70, 260
SchI	GAGTC	2 cut(s)	86, 488
ScrFI	CCNGG	1 cut(s)	258
SetI	ASST	8 cut(s)	18, 35, 145, 185, 355, 391, 513, 655
SmiMI	CAYNNNNRTG	2 cut(s)	423, 471
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	6 cut(s)	120, 158, 321, 366, 552, 665
SseBI	AGGCCT	1 cut(s)	213
SspMI	CTAG	2 cut(s)	11, 654
StuI	AGGCCT	1 cut(s)	213
StyD4I	CCNGG	1 cut(s)	256
StyI	CCWWGG	2 cut(s)	373, 393
TaqI	TCGA	2 cut(s)	205, 518
TasI	AATT	6 cut(s)	120, 158, 321, 366, 552, 665
TfiI	GAWTC	3 cut(s)	267, 413, 634
Tru1I	TTAA	4 cut(s)	123, 216, 320, 670
Tru9I	TTAA	4 cut(s)	123, 216, 320, 670
TscAI	CASTG	2 cut(s)	288, 436
TseI	GCWGC	4 cut(s)	50, 128, 164, 188
TspDTI	ATGAA	3 cut(s)	17, 281, 648
TspRI	CASTG	2 cut(s)	288, 436
Vha464I	CTTAAG	1 cut(s)	215
VspI	ATTAAT	1 cut(s)	320
XapI	RAATTY	3 cut(s)	158, 366, 665
XceI	RCATGY	1 cut(s)	105
XspI	CTAG	2 cut(s)	11, 654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.