Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000571.1

Orthogroup ID

OG0001436

Physical Location & Seq

Genomic Coordinates Forward (+)

50603 .. 54357

Gene Structure 3755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000571.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

atgaaggagtttcaagatccccaggctagggattccattgaaggtgcatttgagatggcgtggttattaattatctcttctatgattgtaatttggatagcttttctgttcaaaattctccatggtgcatactcaccttccaagggtgctttcgtgcatgattctaataatggtggcagtgccaagaagagaaatttgttgctggttgtttcccacccagatgatgagtccatgttcttcactccaacaataaactacctcacttcgagagggcattatattcacatcttatgctttcgctgcgagattgagttgaagatttcttctgaaggtgtccaactcagtaatccaaaaccagaaagagtacaaatagcagaggaggcagatgataatgatgatggagaaaaagaaaaagatgccgactgttggcacgataagcctgcaagcaagctcaacgaaacaagtccagaaggccggtgtaagattgatctgccgctgcatatttgtgaaatgcttgggatgcttaccatgaagaatgaggaggcatatagtggatgcccttttttaagctacttttctgaagcttttcaagacacatattactatttcaggaggtcaaagcattttatggggcgaattgatgatgggatcatggggagagtgtcgaagccaagttccgcgctttgccaatacggcacagcaaaatacggcactatgacgcaaaaatccgaacgcaaacacggcatattctgtcaatttcattatattgttgggctgattggtgcaaggcagagaacacagaggctacttgaatatttagaagatcagttggttaaagctgcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

PIG-L

Protein Analysis

281

Amino Acids

32.07

Weight (kDa)

6.07

Isoelectric Point (pI)

38.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27340 AT2G27340 AT2G27340 AT2G27340 AT2G27340 AT3G58130 AT3G58130
fragaria_vesca	FvH4_5g18940 FvH4_5g18940 FvH4_5g18940 FvH4_7g18930 FvH4_7g18930 FvH4_7g18930 FvH4_7g18930 FvH4_7g18930 FvH4_7g18930 FvH4_7g18930 FvH4_7g18930 FvH4_7g18930
malus_domestica	MD16G1270300.v1.1
prunus_persica	Prupe.5G069900_v2.0.a1
pyrus_communis	pycom16g23930
rosa_chinensis	RchiOBHm_Chr7g0203331 RchiOBHm_Chr7g0203411 RchiOBHm_Chr7g0204201 RchiOBHm_Chr7g0204241
rosa_laevigata	RLG00000003532 RLG00000003534
rosa_multiflora	Rmu_sc0000571.1_g000008 Rmu_sc0000571.1_g000010 Rmu_sc0001988.1_g000001 Rmu_sc0005723.1_g000004 Rmu_sc0019458.1_g000001
rosa_roxburghii	Rroxscaffold_3G00253860 Rroxscaffold_3G00253870
rosa_rugosa	Rorug07G0075700 Rorug07G0075700 Rorug07G0075900
rosa_samantha	Rh7BG204700 Rh7BG205000 Rh7BG205200 Rh7CG216500 Rh7CG216700 Rh7CG217400 Rh7CG217800 Rh7DG212200 Rh7DG212500 Rh7DG218300 Rh7DG218500
rosa_wichuraiana	Rw7G017890 Rw7G017920 Rw7G017940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	680
AciI	CCGC	2 cut(s)	494, 678
AclWI	GGATC	2 cut(s)	11, 656
AcsI	RAATTY	2 cut(s)	114, 193
AcuI	CTGAAG	2 cut(s)	348, 600
AfaI	GTAC	1 cut(s)	366
AfiI	CCNNNNNNNGG	4 cut(s)	27, 28, 143, 426
AgsI	TTSAA	6 cut(s)	14, 41, 112, 316, 590, 812
AjnI	CCWGG	1 cut(s)	21
AjuI	GAANNNNNNNTTGG	2 cut(s)	134, 166
AluBI	AGCT	5 cut(s)	101, 451, 570, 584, 839
AluI	AGCT	5 cut(s)	101, 451, 570, 584, 839
AlwI	GGATC	2 cut(s)	11, 656
AoxI	GGCC	1 cut(s)	472
ApeKI	GCWGC	3 cut(s)	300, 496, 839
ApoI	RAATTY	2 cut(s)	114, 193
AseI	ATTAAT	1 cut(s)	68
Asp700I	GAANNNNTTC	1 cut(s)	585
AspLEI	GCGC	1 cut(s)	682
AsuHPI	GGTGA	1 cut(s)	126
BbvI	GCAGC	3 cut(s)	287, 483, 826
BccI	CCATC	3 cut(s)	49, 392, 638
BceAI	ACGGC	3 cut(s)	709, 724, 757
BcgI	CGANNNNNNTGC	2 cut(s)	422, 456
BciT130I	CCWGG	1 cut(s)	23
BfaI	CTAG	1 cut(s)	27
BglI	GCCNNNNNGGC	1 cut(s)	693
BisI	GCNGC	4 cut(s)	301, 494, 497, 840
BlsI	GCNGC	4 cut(s)	302, 495, 498, 841
Bme1390I	CCNGG	1 cut(s)	23
BmrFI	CCNGG	1 cut(s)	23
BmsI	GCATC	3 cut(s)	406, 510, 545
BsaJI	CCNNGG	3 cut(s)	21, 121, 141
Bsc4I	CCNNNNNNNGG	4 cut(s)	27, 28, 143, 426
Bse118I	RCCGGY	1 cut(s)	474
BseBI	CCWGG	1 cut(s)	23
BseDI	CCNNGG	3 cut(s)	21, 121, 141
BseGI	GGATG	2 cut(s)	525, 560
BseLI	CCNNNNNNNGG	4 cut(s)	27, 28, 143, 426
BseMII	CTCAG	1 cut(s)	355
BseRI	GAGGAG	2 cut(s)	392, 554
BseXI	GCAGC	3 cut(s)	287, 483, 826
Bsh1236I	CGCG	1 cut(s)	680
BshFI	GGCC	1 cut(s)	474
BsiSI	CCGG	1 cut(s)	475
BslI	CCNNNNNNNGG	4 cut(s)	27, 28, 143, 426
BsnI	GGCC	1 cut(s)	474
Bsp143I	GATC	4 cut(s)	16, 487, 648, 823
Bsp19I	CCATGG	1 cut(s)	121
BspACI	CCGC	2 cut(s)	494, 678
BspANI	GGCC	1 cut(s)	474
BspCNI	CTCAG	1 cut(s)	354
BspFNI	CGCG	1 cut(s)	680
BspPI	GGATC	2 cut(s)	11, 656
BsrFI	RCCGGY	1 cut(s)	474
BssAI	RCCGGY	1 cut(s)	474
BssECI	CCNNGG	3 cut(s)	21, 121, 141
BssMI	GATC	4 cut(s)	16, 487, 648, 823
BssT1I	CCWWGG	2 cut(s)	121, 141
Bst2UI	CCWGG	1 cut(s)	23
Bst4CI	ACNGT	1 cut(s)	425
Bst6I	CTCTTC	2 cut(s)	82, 182
BstC8I	GCNNGC	3 cut(s)	441, 445, 449
BstDEI	CTNAG	1 cut(s)	341
BstDSI	CCRYGG	1 cut(s)	121
BstF5I	GGATG	2 cut(s)	525, 560
BstFNI	CGCG	1 cut(s)	680
BstHHI	GCGC	1 cut(s)	682
BstKTI	GATC	4 cut(s)	19, 490, 651, 826
BstMBI	GATC	4 cut(s)	16, 487, 648, 823
BstMWI	GCNNNNNNNGC	6 cut(s)	300, 380, 436, 520, 693, 741
BstNI	CCWGG	1 cut(s)	23
BstSCI	CCNGG	1 cut(s)	21
BstUI	CGCG	1 cut(s)	680
BstV1I	GCAGC	3 cut(s)	287, 483, 826
BstX2I	RGATCY	1 cut(s)	16
BstYI	RGATCY	1 cut(s)	16
BsuRI	GGCC	1 cut(s)	474
BtgI	CCRYGG	1 cut(s)	121
BtsCI	GGATG	2 cut(s)	525, 560
BtsI	GCAGTG	1 cut(s)	184
BtsIMutI	CAGTG	1 cut(s)	184
Cac8I	GCNNGC	3 cut(s)	441, 445, 449
CfoI	GCGC	1 cut(s)	682
Cfr10I	RCCGGY	1 cut(s)	474
CseI	GACGC	1 cut(s)	727
Csp6I	GTAC	1 cut(s)	365
CviAII	CATG	6 cut(s)	122, 158, 232, 529, 652, 843
CviQI	GTAC	1 cut(s)	365
DdeI	CTNAG	1 cut(s)	341
DpnI	GATC	4 cut(s)	18, 489, 650, 825
DpnII	GATC	4 cut(s)	16, 487, 648, 823
Eam1104I	CTCTTC	2 cut(s)	82, 182
EarI	CTCTTC	2 cut(s)	82, 182
Eco130I	CCWWGG	2 cut(s)	121, 141
Eco57I	CTGAAG	2 cut(s)	348, 600
EcoRII	CCWGG	1 cut(s)	21
EcoT14I	CCWWGG	2 cut(s)	121, 141
ErhI	CCWWGG	2 cut(s)	121, 141
FaeI	CATG	6 cut(s)	125, 161, 235, 532, 655, 846
FatI	CATG	6 cut(s)	121, 157, 231, 528, 651, 842
Fnu4HI	GCNGC	4 cut(s)	301, 494, 497, 840
FokI	GGATG	2 cut(s)	532, 567
Fsp4HI	GCNGC	4 cut(s)	301, 494, 497, 840
FspBI	CTAG	1 cut(s)	27
GlaI	GCGC	1 cut(s)	681
GluI	GCNGC	4 cut(s)	301, 494, 497, 840
HaeIII	GGCC	1 cut(s)	474
HapII	CCGG	1 cut(s)	475
HgaI	GACGC	1 cut(s)	727
HhaI	GCGC	1 cut(s)	682
Hin1II	CATG	6 cut(s)	125, 161, 235, 532, 655, 846
Hin6I	GCGC	1 cut(s)	680
HinP1I	GCGC	1 cut(s)	680
HindIII	AAGCTT	1 cut(s)	582
HinfI	GANTC	3 cut(s)	32, 161, 227
HpaII	CCGG	1 cut(s)	475
HphI	GGTGA	1 cut(s)	126
Hpy188I	TCNGA	3 cut(s)	328, 580, 730
Hpy188III	TCNNGA	5 cut(s)	14, 267, 467, 590, 610
HpyAV	CCTTC	4 cut(s)	35, 147, 323, 464
HpyCH4III	ACNGT	1 cut(s)	425
HpyCH4V	TGCA	7 cut(s)	47, 128, 157, 443, 499, 785, 842
HpyF10VI	GCNNNNNNNGC	6 cut(s)	300, 380, 436, 520, 693, 741
HpyF3I	CTNAG	1 cut(s)	341
Hsp92II	CATG	6 cut(s)	125, 161, 235, 532, 655, 846
HspAI	GCGC	1 cut(s)	680
Kzo9I	GATC	4 cut(s)	16, 487, 648, 823
LpnPI	CCDG	9 cut(s)	8, 35, 188, 231, 369, 453, 480, 488, 595
Lsp1109I	GCAGC	3 cut(s)	287, 483, 826
LweI	GCATC	3 cut(s)	406, 510, 545
MaeI	CTAG	1 cut(s)	27
MalI	GATC	4 cut(s)	18, 489, 650, 825
MboI	GATC	4 cut(s)	16, 487, 648, 823
MboII	GAAGA	7 cut(s)	69, 199, 229, 315, 328, 544, 833
MflI	RGATCY	1 cut(s)	16
MluCI	AATT	6 cut(s)	69, 90, 114, 193, 636, 755
MlyI	GAGTC	1 cut(s)	236
MmeI	TCCRAC	2 cut(s)	269, 361
MnlI	CCTC	8 cut(s)	263, 269, 370, 373, 532, 535, 606, 795
MroXI	GAANNNNTTC	1 cut(s)	585
MseI	TTAA	3 cut(s)	68, 566, 834
MslI	CAYNNNNRTG	2 cut(s)	219, 504
MspA1I	CMGCKG	1 cut(s)	496
MspI	CCGG	1 cut(s)	475
MspR9I	CCNGG	1 cut(s)	23
MvaI	CCWGG	1 cut(s)	23
MvnI	CGCG	1 cut(s)	680
MwoI	GCNNNNNNNGC	6 cut(s)	300, 380, 436, 520, 693, 741
NcoI	CCATGG	1 cut(s)	121
NdeII	GATC	4 cut(s)	16, 487, 648, 823
NlaIII	CATG	6 cut(s)	125, 161, 235, 532, 655, 846
PdmI	GAANNNNTTC	1 cut(s)	585
PfeI	GAWTC	2 cut(s)	32, 161
PkrI	GCNGC	4 cut(s)	302, 495, 498, 841
PleI	GAGTC	1 cut(s)	235
PpsI	GAGTC	1 cut(s)	235
PshBI	ATTAAT	1 cut(s)	68
Psp6I	CCWGG	1 cut(s)	21
PspGI	CCWGG	1 cut(s)	21
PsuI	RGATCY	1 cut(s)	16
RsaI	GTAC	1 cut(s)	366
RsaNI	GTAC	1 cut(s)	365
RseI	CAYNNNNRTG	2 cut(s)	219, 504
SaqAI	TTAA	3 cut(s)	68, 566, 834
SatI	GCNGC	4 cut(s)	301, 494, 497, 840
Sau3AI	GATC	4 cut(s)	16, 487, 648, 823
SchI	GAGTC	1 cut(s)	236
ScrFI	CCNGG	1 cut(s)	23
SfaNI	GCATC	3 cut(s)	406, 510, 545
SmiMI	CAYNNNNRTG	2 cut(s)	219, 504
Sse9I	AATT	6 cut(s)	69, 90, 114, 193, 636, 755
SsiI	CCGC	2 cut(s)	494, 678
SspI	AATATT	1 cut(s)	815
SspMI	CTAG	1 cut(s)	27
StyD4I	CCNGG	1 cut(s)	21
StyI	CCWWGG	2 cut(s)	121, 141
TaaI	ACNGT	1 cut(s)	425
TaqI	TCGA	2 cut(s)	266, 665
TasI	AATT	6 cut(s)	69, 90, 114, 193, 636, 755
TatI	WGTACW	1 cut(s)	364
TauI	GCSGC	1 cut(s)	496
TfiI	GAWTC	2 cut(s)	32, 161
Tru1I	TTAA	3 cut(s)	68, 566, 834
Tru9I	TTAA	3 cut(s)	68, 566, 834
TscAI	CASTG	1 cut(s)	184
TseI	GCWGC	3 cut(s)	300, 496, 839
TspDTI	ATGAA	3 cut(s)	17, 545, 749
TspRI	CASTG	1 cut(s)	184
VspI	ATTAAT	1 cut(s)	68
XapI	RAATTY	2 cut(s)	114, 193
XmnI	GAANNNNTTC	1 cut(s)	585
XspI	CTAG	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.