Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001436

Physical Location & Seq

Genomic Coordinates Forward (+)

19086896 .. 19088278

Gene Structure 1383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G017940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGTTGGCACGGCTCAGTGCAATATTTGAACAGGGCAGGCTAATTGCTGAAACAGACATTGCCAGACTCCATTTAAAAATTCACTCCTGCAAGCAAGCTCAACGAAACAAGTCCAGAAGGCCGGCAGACCTGTTTGAGTGTTGGGCTGATTGGTGCAAGGCAGAGAACACAGAGGCTACTGGAATATTTAGAAGATCAGTTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

68

Amino Acids

7.82

Weight (kDa)

9.41

Isoelectric Point (pI)

60.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27340 AT2G27340 AT2G27340 AT2G27340 AT2G27340 AT3G58130 AT3G58130
fragaria_vesca	FvH4_5g18940 FvH4_5g18940 FvH4_5g18940 FvH4_7g18930 FvH4_7g18930 FvH4_7g18930 FvH4_7g18930 FvH4_7g18930 FvH4_7g18930 FvH4_7g18930 FvH4_7g18930 FvH4_7g18930
malus_domestica	MD16G1270300.v1.1
prunus_persica	Prupe.5G069900_v2.0.a1
pyrus_communis	pycom16g23930
rosa_chinensis	RchiOBHm_Chr7g0203331 RchiOBHm_Chr7g0203411 RchiOBHm_Chr7g0204201 RchiOBHm_Chr7g0204241
rosa_laevigata	RLG00000003532 RLG00000003534
rosa_multiflora	Rmu_sc0000571.1_g000008 Rmu_sc0000571.1_g000010 Rmu_sc0001988.1_g000001 Rmu_sc0005723.1_g000004 Rmu_sc0019458.1_g000001
rosa_roxburghii	Rroxscaffold_3G00253860 Rroxscaffold_3G00253870
rosa_rugosa	Rorug07G0075700 Rorug07G0075700 Rorug07G0075900
rosa_samantha	Rh7BG204700 Rh7BG205000 Rh7BG205200 Rh7CG216500 Rh7CG216700 Rh7CG217400 Rh7CG217800 Rh7DG212200 Rh7DG212500 Rh7DG218300 Rh7DG218500
rosa_wichuraiana	Rw7G017890 Rw7G017920 Rw7G017940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	78
AgsI	TTSAA	1 cut(s)	29
AluBI	AGCT	1 cut(s)	98
AluI	AGCT	1 cut(s)	98
AoxI	GGCC	1 cut(s)	119
ApoI	RAATTY	1 cut(s)	78
BceAI	ACGGC	1 cut(s)	26
Bse118I	RCCGGY	1 cut(s)	121
Bse1I	ACTGG	1 cut(s)	184
Bse3DI	GCAATG	1 cut(s)	57
BseMI	GCAATG	1 cut(s)	57
BseMII	CTCAG	1 cut(s)	28
BseNI	ACTGG	1 cut(s)	184
BshFI	GGCC	1 cut(s)	121
BsiSI	CCGG	1 cut(s)	122
BsnI	GGCC	1 cut(s)	121
Bsp143I	GATC	1 cut(s)	194
BspANI	GGCC	1 cut(s)	121
BspCNI	CTCAG	1 cut(s)	27
BsrDI	GCAATG	1 cut(s)	57
BsrFI	RCCGGY	1 cut(s)	121
BsrI	ACTGG	1 cut(s)	184
BssAI	RCCGGY	1 cut(s)	121
BssMI	GATC	1 cut(s)	194
BstC8I	GCNNGC	4 cut(s)	38, 92, 96, 123
BstDEI	CTNAG	1 cut(s)	14
BstKTI	GATC	1 cut(s)	197
BstMBI	GATC	1 cut(s)	194
BsuRI	GGCC	1 cut(s)	121
BtsIMutI	CAGTG	1 cut(s)	22
Cac8I	GCNNGC	4 cut(s)	38, 92, 96, 123
Cfr10I	RCCGGY	1 cut(s)	121
CviJI	RGCY	6 cut(s)	13, 40, 98, 121, 146, 176
CviKI_1	RGCY	6 cut(s)	13, 40, 98, 121, 146, 176
DdeI	CTNAG	1 cut(s)	14
DpnI	GATC	1 cut(s)	196
DpnII	GATC	1 cut(s)	194
DraI	TTTAAA	1 cut(s)	75
HaeIII	GGCC	1 cut(s)	121
HapII	CCGG	1 cut(s)	122
HinfI	GANTC	1 cut(s)	66
HpaII	CCGG	1 cut(s)	122
Hpy188III	TCNNGA	1 cut(s)	114
HpyAV	CCTTC	1 cut(s)	111
HpyCH4V	TGCA	3 cut(s)	20, 90, 156
HpyF3I	CTNAG	1 cut(s)	14
KroI	GCCGGC	1 cut(s)	121
KroNI	GCCGGC	1 cut(s)	123
Kzo9I	GATC	1 cut(s)	194
LpnPI	CCDG	8 cut(s)	17, 22, 76, 100, 127, 135, 143, 165
MalI	GATC	1 cut(s)	196
MboI	GATC	1 cut(s)	194
MboII	GAAGA	1 cut(s)	204
MluCI	AATT	2 cut(s)	42, 78
MlyI	GAGTC	1 cut(s)	60
MnlI	CCTC	1 cut(s)	166
MroNI	GCCGGC	1 cut(s)	121
MseI	TTAA	2 cut(s)	74, 205
MspI	CCGG	1 cut(s)	122
NaeI	GCCGGC	1 cut(s)	123
NdeII	GATC	1 cut(s)	194
NgoMIV	GCCGGC	1 cut(s)	121
PdiI	GCCGGC	1 cut(s)	123
PleI	GAGTC	1 cut(s)	60
PpsI	GAGTC	1 cut(s)	60
SaqAI	TTAA	2 cut(s)	74, 205
Sau3AI	GATC	1 cut(s)	194
SchI	GAGTC	1 cut(s)	60
SetI	ASST	2 cut(s)	100, 132
Sse9I	AATT	2 cut(s)	42, 78
SspI	AATATT	2 cut(s)	24, 186
TasI	AATT	2 cut(s)	42, 78
Tru1I	TTAA	2 cut(s)	74, 205
Tru9I	TTAA	2 cut(s)	74, 205
TscAI	CASTG	1 cut(s)	22
TspRI	CASTG	1 cut(s)	22
XapI	RAATTY	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.