Rh7CG217800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001436
Physical Location & Seq
Forward (+)
19948494 .. 19951833
3340 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG217800.1

Sequence Viewer

Length: 258 bp
ATGAGGATGTTGGCACGAGGTATGTGTTCATTTGCCAAACATACGGATGAAGGAGTTTCAAGATCCCCAGGGATTCCATTGAAGGTGCATTTGAGATGGCGTGTCGCTGCGAGATTGAGTTTGAAGATTTCTTCTGAAGGGGTCCAGTTCAGTAATCCAAAAACTGGAAGTGTACAAATAGCAGAGGAGGCAGATGATAATGATGATGGAGAAAAAGAAAAAGATGCCGATCTTGGCATGGCTCAGTGCAATATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

9.3

Weight (kDa)

6.07

Isoelectric Point (pI)

32.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 164
AclWI GGATC 1 cut(s) 57
AcuI CTGAAG 1 cut(s) 156
AfaI GTAC 1 cut(s) 174
AfiI CCNNNNNNNGG 1 cut(s) 164
AgsI TTSAA 3 cut(s) 60, 82, 124
AjnI CCWGG 1 cut(s) 67
AlwI GGATC 1 cut(s) 57
ApeKI GCWGC 1 cut(s) 107
AspS9I GGNCC 1 cut(s) 142
AvaII GGWCC 1 cut(s) 142
BauI CACGAG 1 cut(s) 15
BbvI GCAGC 1 cut(s) 94
BccI CCATC 2 cut(s) 90, 200
BciT130I CCWGG 1 cut(s) 69
BisI GCNGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 109
Bme1390I CCNGG 1 cut(s) 69
Bme18I GGWCC 1 cut(s) 142
BmgT120I GGNCC 1 cut(s) 142
BmiI GGNNCC 1 cut(s) 143
BmrFI CCNGG 1 cut(s) 69
BmsI GCATC 1 cut(s) 214
BsaBI GATNNNNATC 1 cut(s) 228
BsaJI CCNNGG 2 cut(s) 67, 68
Bsc4I CCNNNNNNNGG 1 cut(s) 164
Bse1I ACTGG 2 cut(s) 145, 169
Bse8I GATNNNNATC 1 cut(s) 228
BseBI CCWGG 1 cut(s) 69
BseDI CCNNGG 2 cut(s) 67, 68
BseGI GGATG 2 cut(s) 12, 52
BseJI GATNNNNATC 1 cut(s) 228
BseLI CCNNNNNNNGG 1 cut(s) 164
BseMII CTCAG 1 cut(s) 257
BseNI ACTGG 2 cut(s) 145, 169
BseRI GAGGAG 1 cut(s) 200
BseXI GCAGC 1 cut(s) 94
BslI CCNNNNNNNGG 1 cut(s) 164
Bsp1407I TGTACA 1 cut(s) 172
Bsp143I GATC 2 cut(s) 62, 229
BspCNI CTCAG 1 cut(s) 256
BspLI GGNNCC 1 cut(s) 143
BspPI GGATC 1 cut(s) 57
BsrGI TGTACA 1 cut(s) 172
BsrI ACTGG 2 cut(s) 145, 169
BssECI CCNNGG 2 cut(s) 67, 68
BssMI GATC 2 cut(s) 62, 229
BssSI CACGAG 1 cut(s) 15
Bst2BI CACGAG 1 cut(s) 15
Bst2UI CCWGG 1 cut(s) 69
BstAUI TGTACA 1 cut(s) 172
BstDEI CTNAG 1 cut(s) 243
BstF5I GGATG 2 cut(s) 12, 52
BstKTI GATC 2 cut(s) 65, 232
BstMBI GATC 2 cut(s) 62, 229
BstMWI GCNNNNNNNGC 1 cut(s) 188
BstNI CCWGG 1 cut(s) 69
BstSCI CCNGG 1 cut(s) 67
BstV1I GCAGC 1 cut(s) 94
BstX2I RGATCY 1 cut(s) 62
BstYI RGATCY 1 cut(s) 62
BtsCI GGATG 2 cut(s) 12, 52
BtsIMutI CAGTG 1 cut(s) 251
Cfr13I GGNCC 1 cut(s) 142
Csp6I GTAC 1 cut(s) 173
CviAII CATG 1 cut(s) 238
CviJI RGCY 1 cut(s) 242
CviKI_1 RGCY 1 cut(s) 242
CviQI GTAC 1 cut(s) 173
DdeI CTNAG 1 cut(s) 243
DpnI GATC 2 cut(s) 64, 231
DpnII GATC 2 cut(s) 62, 229
Eco47I GGWCC 1 cut(s) 142
Eco57I CTGAAG 1 cut(s) 156
EcoRII CCWGG 1 cut(s) 67
FaeI CATG 1 cut(s) 241
FaiI YATR 3 cut(s) 23, 42, 239
FatI CATG 1 cut(s) 237
Fnu4HI GCNGC 1 cut(s) 108
FokI GGATG 2 cut(s) 19, 59
Fsp4HI GCNGC 1 cut(s) 108
GluI GCNGC 1 cut(s) 108
Hin1II CATG 1 cut(s) 241
HinfI GANTC 1 cut(s) 73
Hpy166II GTNNAC 1 cut(s) 173
Hpy188I TCNGA 1 cut(s) 136
Hpy188III TCNNGA 1 cut(s) 60
Hpy8I GTNNAC 1 cut(s) 173
HpyAV CCTTC 3 cut(s) 44, 76, 131
HpyCH4V TGCA 2 cut(s) 88, 249
HpyF10VI GCNNNNNNNGC 1 cut(s) 188
HpyF3I CTNAG 1 cut(s) 243
Hsp92II CATG 1 cut(s) 241
Kzo9I GATC 2 cut(s) 62, 229
LpnPI CCDG 4 cut(s) 54, 81, 150, 158
Lsp1109I GCAGC 1 cut(s) 94
LweI GCATC 1 cut(s) 214
MalI GATC 2 cut(s) 64, 231
MboI GATC 2 cut(s) 62, 229
MboII GAAGA 2 cut(s) 123, 136
MflI RGATCY 1 cut(s) 62
MnlI CCTC 3 cut(s) 11, 178, 181
MslI CAYNNNNRTG 1 cut(s) 45
MspR9I CCNGG 1 cut(s) 69
MvaI CCWGG 1 cut(s) 69
MwoI GCNNNNNNNGC 1 cut(s) 188
NdeII GATC 2 cut(s) 62, 229
NlaIII CATG 1 cut(s) 241
NlaIV GGNNCC 1 cut(s) 143
PasI CCCWGGG 1 cut(s) 68
PfeI GAWTC 1 cut(s) 73
PflMI CCANNNNNTGG 1 cut(s) 164
PkrI GCNGC 1 cut(s) 109
Psp6I CCWGG 1 cut(s) 67
PspGI CCWGG 1 cut(s) 67
PspN4I GGNNCC 1 cut(s) 143
PspPI GGNCC 1 cut(s) 142
PsuI RGATCY 1 cut(s) 62
RsaI GTAC 1 cut(s) 174
RsaNI GTAC 1 cut(s) 173
RseI CAYNNNNRTG 1 cut(s) 45
SatI GCNGC 1 cut(s) 108
Sau3AI GATC 2 cut(s) 62, 229
Sau96I GGNCC 1 cut(s) 142
ScrFI CCNGG 1 cut(s) 69
SetI ASST 2 cut(s) 22, 87
SfaNI GCATC 1 cut(s) 214
SinI GGWCC 1 cut(s) 142
SmiMI CAYNNNNRTG 1 cut(s) 45
SspI AATATT 1 cut(s) 253
StyD4I CCNGG 1 cut(s) 67
TatI WGTACW 1 cut(s) 172
TfiI GAWTC 1 cut(s) 73
TscAI CASTG 1 cut(s) 251
TseI GCWGC 1 cut(s) 107
TspDTI ATGAA 2 cut(s) 18, 63
TspGWI ACGGA 1 cut(s) 59
TspRI CASTG 1 cut(s) 251
Van91I CCANNNNNTGG 1 cut(s) 164
VpaK11BI GGWCC 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.