Rh7DG212500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0001436
Physical Location & Seq
Forward (+)
20477252 .. 20478687
1436 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG212500.1

Sequence Viewer

Length: 414 bp
ATGATAATGATGATGGAGAGAAAGAAAAAGATGCCGATGTTGGCATGGCTCAGTGCAATATTTGAACAGGGCAGGCTAATTGCTGAAACAGACATTGCCAGACTCCATTTAAAAATTCACTCCTGCAAGCAAGCTCAACGAAACAAGTCCAGAAGGCCGGCAGACCTGTTTGAGTGTAAGATTGATCTGCCGCTGCGTATTTGTGAAATGCTTGGGATGCTTACCACGAAGAATGAAGAGGCATATAGTGGATGCCCTGAGATCAAACTATCAAAGCATTTTATGGGGCGAAATGATGATGCGATCATGGGGAGAGTGTTGAAGCTAAGTTCCGCGGTTGGGCTGATTGGTGCAAGGCAGAGAACACAGAGGCTACTGGAATATTTAGAAGATCAGTTGGTTAAGGCTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

15.79

Weight (kDa)

9.44

Isoelectric Point (pI)

42.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 335
AciI CCGC 3 cut(s) 191, 333, 335
AcsI RAATTY 1 cut(s) 114
AfiI CCNNNNNNNGG 1 cut(s) 339
AgsI TTSAA 2 cut(s) 65, 322
AluBI AGCT 2 cut(s) 134, 325
AluI AGCT 2 cut(s) 134, 325
AoxI GGCC 1 cut(s) 155
ApeKI GCWGC 1 cut(s) 193
ApoI RAATTY 1 cut(s) 114
BbvI GCAGC 1 cut(s) 180
BccI CCATC 1 cut(s) 7
BisI GCNGC 2 cut(s) 191, 194
BlsI GCNGC 2 cut(s) 192, 195
BmsI GCATC 4 cut(s) 21, 207, 242, 289
BsaJI CCNNGG 1 cut(s) 333
Bsc4I CCNNNNNNNGG 1 cut(s) 339
Bse118I RCCGGY 1 cut(s) 157
Bse1I ACTGG 1 cut(s) 381
Bse3DI GCAATG 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 333
BseGI GGATG 2 cut(s) 222, 257
BseLI CCNNNNNNNGG 1 cut(s) 339
BseMI GCAATG 1 cut(s) 93
BseMII CTCAG 2 cut(s) 64, 249
BseNI ACTGG 1 cut(s) 381
BseXI GCAGC 1 cut(s) 180
Bsh1236I CGCG 1 cut(s) 335
BshFI GGCC 1 cut(s) 157
BsiSI CCGG 1 cut(s) 158
BslI CCNNNNNNNGG 1 cut(s) 339
BsnI GGCC 1 cut(s) 157
Bsp143I GATC 4 cut(s) 184, 261, 303, 391
BspACI CCGC 3 cut(s) 191, 333, 335
BspANI GGCC 1 cut(s) 157
BspCNI CTCAG 2 cut(s) 63, 250
BspFNI CGCG 1 cut(s) 335
BsrDI GCAATG 1 cut(s) 93
BsrFI RCCGGY 1 cut(s) 157
BsrI ACTGG 1 cut(s) 381
BssAI RCCGGY 1 cut(s) 157
BssECI CCNNGG 1 cut(s) 333
BssMI GATC 4 cut(s) 184, 261, 303, 391
Bst6I CTCTTC 1 cut(s) 231
BstC8I GCNNGC 4 cut(s) 74, 128, 132, 159
BstDEI CTNAG 3 cut(s) 50, 258, 326
BstDSI CCRYGG 1 cut(s) 333
BstF5I GGATG 2 cut(s) 222, 257
BstFNI CGCG 1 cut(s) 335
BstKTI GATC 4 cut(s) 187, 264, 306, 394
BstMBI GATC 4 cut(s) 184, 261, 303, 391
BstMWI GCNNNNNNNGC 1 cut(s) 217
BstUI CGCG 1 cut(s) 335
BstV1I GCAGC 1 cut(s) 180
BsuRI GGCC 1 cut(s) 157
BtgI CCRYGG 1 cut(s) 333
BtsCI GGATG 2 cut(s) 222, 257
BtsIMutI CAGTG 1 cut(s) 58
Cac8I GCNNGC 4 cut(s) 74, 128, 132, 159
Cfr10I RCCGGY 1 cut(s) 157
Cfr42I CCGCGG 1 cut(s) 336
CviAII CATG 2 cut(s) 45, 307
CviJI RGCY 8 cut(s) 49, 76, 134, 157, 325, 343, 373, 407
CviKI_1 RGCY 8 cut(s) 49, 76, 134, 157, 325, 343, 373, 407
DdeI CTNAG 3 cut(s) 50, 258, 326
DpnI GATC 4 cut(s) 186, 263, 305, 393
DpnII GATC 4 cut(s) 184, 261, 303, 391
DraI TTTAAA 1 cut(s) 111
Eam1104I CTCTTC 1 cut(s) 231
EarI CTCTTC 1 cut(s) 231
FaeI CATG 2 cut(s) 48, 310
FaiI YATR 5 cut(s) 46, 244, 246, 284, 308
FatI CATG 2 cut(s) 44, 306
Fnu4HI GCNGC 2 cut(s) 191, 194
FokI GGATG 2 cut(s) 229, 264
Fsp4HI GCNGC 2 cut(s) 191, 194
GluI GCNGC 2 cut(s) 191, 194
HaeIII GGCC 1 cut(s) 157
HapII CCGG 1 cut(s) 158
Hin1II CATG 2 cut(s) 48, 310
HinfI GANTC 1 cut(s) 102
HpaII CCGG 1 cut(s) 158
Hpy188III TCNNGA 1 cut(s) 150
HpyAV CCTTC 1 cut(s) 147
HpyCH4V TGCA 3 cut(s) 56, 126, 353
HpyF10VI GCNNNNNNNGC 1 cut(s) 217
HpyF3I CTNAG 3 cut(s) 50, 258, 326
Hsp92II CATG 2 cut(s) 48, 310
KroI GCCGGC 1 cut(s) 157
KroNI GCCGGC 1 cut(s) 159
KspI CCGCGG 1 cut(s) 336
Kzo9I GATC 4 cut(s) 184, 261, 303, 391
LpnPI CCDG 9 cut(s) 53, 58, 112, 136, 163, 171, 179, 270, 362
Lsp1109I GCAGC 1 cut(s) 180
LweI GCATC 4 cut(s) 21, 207, 242, 289
MalI GATC 4 cut(s) 186, 263, 305, 393
MboI GATC 4 cut(s) 184, 261, 303, 391
MboII GAAGA 3 cut(s) 241, 248, 401
MluCI AATT 2 cut(s) 78, 114
MlyI GAGTC 1 cut(s) 96
MnlI CCTC 2 cut(s) 232, 363
MroNI GCCGGC 1 cut(s) 157
MseI TTAA 2 cut(s) 110, 402
MspA1I CMGCKG 2 cut(s) 193, 335
MspI CCGG 1 cut(s) 158
MvnI CGCG 1 cut(s) 335
MwoI GCNNNNNNNGC 1 cut(s) 217
NaeI GCCGGC 1 cut(s) 159
NdeII GATC 4 cut(s) 184, 261, 303, 391
NgoMIV GCCGGC 1 cut(s) 157
NlaIII CATG 2 cut(s) 48, 310
PdiI GCCGGC 1 cut(s) 159
PkrI GCNGC 2 cut(s) 192, 195
PleI GAGTC 1 cut(s) 96
PpsI GAGTC 1 cut(s) 96
SacII CCGCGG 1 cut(s) 336
SaqAI TTAA 2 cut(s) 110, 402
SatI GCNGC 2 cut(s) 191, 194
Sau3AI GATC 4 cut(s) 184, 261, 303, 391
SchI GAGTC 1 cut(s) 96
SetI ASST 3 cut(s) 136, 168, 327
SfaNI GCATC 4 cut(s) 21, 207, 242, 289
Sfr303I CCGCGG 1 cut(s) 336
SgrBI CCGCGG 1 cut(s) 336
Sse9I AATT 2 cut(s) 78, 114
SsiI CCGC 3 cut(s) 191, 333, 335
SspI AATATT 2 cut(s) 60, 383
TasI AATT 2 cut(s) 78, 114
TauI GCSGC 1 cut(s) 193
Tru1I TTAA 2 cut(s) 110, 402
Tru9I TTAA 2 cut(s) 110, 402
TscAI CASTG 1 cut(s) 58
TseI GCWGC 1 cut(s) 193
TspDTI ATGAA 1 cut(s) 249
TspRI CASTG 1 cut(s) 58
XapI RAATTY 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.