AT2G38380

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0002716
Physical Location & Seq
Forward (+)
16076289 .. 16078781
2493 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G38380.1

Sequence Viewer

Length: 1050 bp
ATGGGGTTTTCTCCTTCATTTTCTTGCAGTGCTATTGGAGCCCTAATTTTGGGTTGCCTTCTGCTTCAAGCATCAAACTCTAATGCTCAGTTGAGGCCTGATTTCTACTTCGGGACGTGCCCATTTGTTTTTGATATCATTGGAAATATCATCGTCGATGAACTGCAGACTGATCCTCGTATTGCCGCGAGCCTCCTTCGTCTTCACTTTCACGACTGCTTTGTTCGTGGTTGTGATGCATCGATCTTGCTTGACAATTCCACATCATTCCGGACTGAGAAAGATGCTGCTCCGAACGCAAATTCGGCTCGAGGGTTTAATGTCATAGATAGAATGAAAGTAGCCCTTGAGAGAGCTTGCCCAGGAAGAGTCTCTTGTGCAGATATTCTCACCATCGCCTCTCAAATATCAGTGCTTTTGTCGGGAGGTCCATGGTGGCCGGTTCCGTTGGGGAGGAGAGACAGTGTAGAAGCTTTCTTCGCTCTGGCTAATACAGCTCTGCCCTCTCCGTTTTTCAATCTTACTCAACTTAAAACAGCCTTTGCTGACGTTGGCCTAAACCGCACTTCCGATCTAGTTGCTCTTTCCGGTGGTCACACATTTGGAAGAGCACAATGCCAGTTCGTGACGCCTCGTCTCTACAACTTCAATGGTACAAACAGTCCAGACCCAAGTCTGAACCCAACTTACCTTGTCGAACTCCGTCGATTGTGTCCTCAAAACGGAAACGGCACCGTTCTGGTCAACTTCGATGTCGTGACTCCAGATGCTTTCGATAGTCAATACTACACCAACCTTCGTAATGGGAAAGGTCTTATTCAGAGTGACCAGGAACTCTTTTCGACTCCAGGAGCCGATACGATCCCTTTAGTAAACCAATACAGCAGCGACATGTCCGTGTTCTTTCGAGCATTCATTGACGCAATGATTAGGATGGGAAATCTTAGACCTTTGACTGGAACTCAAGGAGAGATTAGACAAAATTGTAGGGTTGTGAATCCACGAATTAGGGTTGTGGAGAACGACGATGGTGTTGTGAGTTCTATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000902 GO:0002215 GO:0002682 GO:0002684 GO:0003006 GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006950 GO:0006952 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009505 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009636 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016209 GO:0016491 GO:0016684 GO:0022414 GO:0030312 GO:0031090 GO:0031347 GO:0031349 GO:0032501 GO:0032502 GO:0032989 GO:0035821 GO:0040007 GO:0040008 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0045926 GO:0048046 GO:0048367 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0070887 GO:0071840 GO:0071944 GO:0072593 GO:0075136 GO:0080134 GO:0090567 GO:0097237 GO:0098542 GO:0098588 GO:0098754 GO:0098805 GO:0098869 GO:1990748
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

349

Amino Acids

38.11

Weight (kDa)

5.66

Isoelectric Point (pI)

33.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 52 - 297 5.6e-80 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 731
AccII CGCG 1 cut(s) 188
AccIII TCCGGA 1 cut(s) 270
AciI CCGC 2 cut(s) 186, 562
AclWI GGATC 2 cut(s) 167, 856
AcoI YGGCCR 1 cut(s) 437
AcsI RAATTY 1 cut(s) 301
AcyI GRCGYC 1 cut(s) 629
AfaI GTAC 1 cut(s) 655
AfiI CCNNNNNNNGG 3 cut(s) 49, 722, 956
AflIII ACRYGT 1 cut(s) 891
AgsI TTSAA 3 cut(s) 68, 517, 649
AhdI GACNNNNNGTC 1 cut(s) 633
AjiI CACGTC 1 cut(s) 117
AjnI CCWGG 3 cut(s) 361, 828, 847
AluBI AGCT 3 cut(s) 356, 473, 497
AluI AGCT 3 cut(s) 356, 473, 497
Alw21I GWGCWC 1 cut(s) 613
Alw26I GTCTC 3 cut(s) 376, 453, 641
AlwI GGATC 2 cut(s) 167, 856
Ama87I CYCGRG 1 cut(s) 309
Aor13HI TCCGGA 1 cut(s) 270
AoxI GGCC 3 cut(s) 95, 437, 553
ApeKI GCWGC 2 cut(s) 287, 885
ApoI RAATTY 1 cut(s) 301
AspS9I GGNCC 1 cut(s) 428
AsuHPI GGTGA 1 cut(s) 382
AvaI CYCGRG 1 cut(s) 309
AvaII GGWCC 1 cut(s) 428
BaeGI GKGCMC 1 cut(s) 122
BanI GGYRCC 1 cut(s) 731
BanII GRGCYC 1 cut(s) 43
BbsI GAAGAC 1 cut(s) 194
Bbv12I GWGCWC 1 cut(s) 613
BbvI GCAGC 2 cut(s) 274, 897
BccI CCATC 3 cut(s) 401, 928, 1022
BceAI ACGGC 1 cut(s) 745
BcgI CGANNNNNNTGC 2 cut(s) 560, 594
BciT130I CCWGG 3 cut(s) 363, 830, 849
BcoDI GTCTC 3 cut(s) 376, 453, 641
BfaI CTAG 1 cut(s) 575
BfmI CTRYAG 1 cut(s) 164
BisI GCNGC 3 cut(s) 186, 288, 886
BlsI GCNGC 3 cut(s) 187, 289, 887
Bme1390I CCNGG 3 cut(s) 363, 830, 849
Bme18I GGWCC 1 cut(s) 428
BmeRI GACNNNNNGTC 1 cut(s) 633
BmeT110I CYCGRG 1 cut(s) 309
BmgBI CACGTC 1 cut(s) 117
BmgT120I GGNCC 1 cut(s) 428
BmiI GGNNCC 4 cut(s) 40, 444, 733, 853
BmrFI CCNGG 3 cut(s) 363, 830, 849
BmsI GCATC 5 cut(s) 80, 226, 248, 274, 757
BoxI GACNNNNGTC 1 cut(s) 672
BpiI GAAGAC 1 cut(s) 194
BpmI CTGGAG 2 cut(s) 747, 831
BpuEI CTTGAG 2 cut(s) 368, 948
Bsa29I ATCGAT 1 cut(s) 242
BsaHI GRCGYC 1 cut(s) 629
BsaJI CCNNGG 2 cut(s) 361, 431
BsaWI WCCGGW 2 cut(s) 270, 587
BsaXI ACNNNNNCTCC 2 cut(s) 448, 478
Bsc4I CCNNNNNNNGG 3 cut(s) 49, 722, 956
Bse118I RCCGGY 1 cut(s) 439
Bse1I ACTGG 2 cut(s) 619, 961
Bse3DI GCAATG 1 cut(s) 930
BseAI TCCGGA 1 cut(s) 270
BseBI CCWGG 3 cut(s) 363, 830, 849
BseCI ATCGAT 1 cut(s) 242
BseDI CCNNGG 2 cut(s) 361, 431
BseGI GGATG 1 cut(s) 939
BseLI CCNNNNNNNGG 3 cut(s) 49, 722, 956
BseMI GCAATG 1 cut(s) 930
BseMII CTCAG 2 cut(s) 101, 267
BseNI ACTGG 2 cut(s) 619, 961
BseRI GAGGAG 1 cut(s) 469
BseSI GKGCMC 1 cut(s) 122
BseXI GCAGC 2 cut(s) 274, 897
BsgI GTGCAG 1 cut(s) 399
Bsh1236I CGCG 1 cut(s) 188
BshFI GGCC 3 cut(s) 97, 439, 555
BshNI GGYRCC 1 cut(s) 731
BshVI ATCGAT 1 cut(s) 242
BsiHKAI GWGCWC 1 cut(s) 613
BsiHKCI CYCGRG 1 cut(s) 309
BsiSI CCGG 3 cut(s) 271, 440, 588
BslFI GGGAC 1 cut(s) 127
BslI CCNNNNNNNGG 3 cut(s) 49, 722, 956
BsmAI GTCTC 3 cut(s) 376, 453, 641
BsmBI CGTCTC 1 cut(s) 641
BsmFI GGGAC 1 cut(s) 127
BsmI GAATGC 1 cut(s) 911
BsnI GGCC 3 cut(s) 97, 439, 555
BsoBI CYCGRG 1 cut(s) 309
Bsp1286I GDGCHC 3 cut(s) 43, 122, 613
Bsp13I TCCGGA 1 cut(s) 270
Bsp143I GATC 4 cut(s) 172, 243, 571, 861
Bsp19I CCATGG 1 cut(s) 431
BspACI CCGC 2 cut(s) 186, 562
BspANI GGCC 3 cut(s) 97, 439, 555
BspCNI CTCAG 2 cut(s) 100, 268
BspDI ATCGAT 1 cut(s) 242
BspEI TCCGGA 1 cut(s) 270
BspFNI CGCG 1 cut(s) 188
BspLI GGNNCC 4 cut(s) 40, 444, 733, 853
BspMAI CTGCAG 1 cut(s) 168
BspPI GGATC 2 cut(s) 167, 856
BspQI GCTCTTC 1 cut(s) 601
BspT107I GGYRCC 1 cut(s) 731
BsrDI GCAATG 1 cut(s) 930
BsrFI RCCGGY 1 cut(s) 439
BsrI ACTGG 2 cut(s) 619, 961
BssAI RCCGGY 1 cut(s) 439
BssECI CCNNGG 2 cut(s) 361, 431
BssMI GATC 4 cut(s) 172, 243, 571, 861
BssNI GRCGYC 1 cut(s) 629
BssT1I CCWWGG 1 cut(s) 431
Bst2UI CCWGG 3 cut(s) 363, 830, 849
Bst4CI ACNGT 3 cut(s) 464, 662, 736
Bst6I CTCTTC 2 cut(s) 361, 601
BstACI GRCGYC 1 cut(s) 629
BstC8I GCNNGC 2 cut(s) 190, 358
BstDEI CTNAG 3 cut(s) 87, 276, 944
BstDSI CCRYGG 1 cut(s) 431
BstF5I GGATG 1 cut(s) 939
BstFNI CGCG 1 cut(s) 188
BstKTI GATC 4 cut(s) 175, 246, 574, 864
BstMAI GTCTC 3 cut(s) 376, 453, 641
BstMBI GATC 4 cut(s) 172, 243, 571, 861
BstMWI GCNNNNNNNGC 6 cut(s) 38, 296, 305, 479, 494, 561
BstNI CCWGG 3 cut(s) 363, 830, 849
BstNSI RCATGY 1 cut(s) 895
BstPAI GACNNNNGTC 1 cut(s) 672
BstSCI CCNGG 3 cut(s) 361, 828, 847
BstSFI CTRYAG 1 cut(s) 164
BstSLI GKGCMC 1 cut(s) 122
BstUI CGCG 1 cut(s) 188
BstV1I GCAGC 2 cut(s) 274, 897
BstV2I GAAGAC 1 cut(s) 194
Bsu15I ATCGAT 1 cut(s) 242
BsuRI GGCC 3 cut(s) 97, 439, 555
BsuTUI ATCGAT 1 cut(s) 242
BtgI CCRYGG 1 cut(s) 431
BtgZI GCGATG 1 cut(s) 379
BtrI CACGTC 1 cut(s) 117
BtsCI GGATG 1 cut(s) 939
BtsI GCAGTG 1 cut(s) 34
BtsIMutI CAGTG 3 cut(s) 34, 417, 469
Cac8I GCNNGC 2 cut(s) 190, 358
Cfr10I RCCGGY 1 cut(s) 439
Cfr13I GGNCC 1 cut(s) 428
ClaI ATCGAT 1 cut(s) 242
CseI GACGC 2 cut(s) 637, 929
Csp6I GTAC 1 cut(s) 654
CviAII CATG 2 cut(s) 432, 892
CviQI GTAC 1 cut(s) 654
DdeI CTNAG 3 cut(s) 87, 276, 944
DpnI GATC 4 cut(s) 174, 245, 573, 863
DpnII GATC 4 cut(s) 172, 243, 571, 861
DriI GACNNNNNGTC 1 cut(s) 633
EaeI YGGCCR 1 cut(s) 437
Eam1104I CTCTTC 2 cut(s) 361, 601
Eam1105I GACNNNNNGTC 1 cut(s) 633
EarI CTCTTC 2 cut(s) 361, 601
Eco130I CCWWGG 1 cut(s) 431
Eco147I AGGCCT 1 cut(s) 97
Eco24I GRGCYC 1 cut(s) 43
Eco32I GATATC 1 cut(s) 136
Eco47I GGWCC 1 cut(s) 428
Eco88I CYCGRG 1 cut(s) 309
EcoRII CCWGG 3 cut(s) 361, 828, 847
EcoRV GATATC 1 cut(s) 136
EcoT14I CCWWGG 1 cut(s) 431
EcoT22I ATGCAT 1 cut(s) 241
EcoT38I GRGCYC 1 cut(s) 43
ErhI CCWWGG 1 cut(s) 431
Esp3I CGTCTC 1 cut(s) 641
FaeI CATG 2 cut(s) 435, 895
FaiI YATR 3 cut(s) 326, 433, 893
FalI AAGNNNNNCTT 4 cut(s) 330, 362, 358, 390
FaqI GGGAC 1 cut(s) 127
FatI CATG 2 cut(s) 431, 891
Fnu4HI GCNGC 3 cut(s) 186, 288, 886
FokI GGATG 1 cut(s) 946
FriOI GRGCYC 1 cut(s) 43
Fsp4HI GCNGC 3 cut(s) 186, 288, 886
FspBI CTAG 1 cut(s) 575
GluI GCNGC 3 cut(s) 186, 288, 886
GsuI CTGGAG 2 cut(s) 747, 831
HaeIII GGCC 3 cut(s) 97, 439, 555
HapII CCGG 3 cut(s) 271, 440, 588
HgaI GACGC 2 cut(s) 637, 929
Hin1I GRCGYC 1 cut(s) 629
Hin1II CATG 2 cut(s) 435, 895
HincII GTYRAC 1 cut(s) 745
HindII GTYRAC 1 cut(s) 745
HindIII AAGCTT 1 cut(s) 471
HinfI GANTC 4 cut(s) 369, 760, 844, 997
HpaII CCGG 3 cut(s) 271, 440, 588
HphI GGTGA 1 cut(s) 382
Hpy166II GTNNAC 2 cut(s) 745, 874
Hpy188I TCNGA 5 cut(s) 294, 571, 678, 822, 1049
Hpy188III TCNNGA 8 cut(s) 112, 212, 271, 423, 625, 665, 757, 764
Hpy8I GTNNAC 2 cut(s) 745, 874
Hpy99I CGWCG 3 cut(s) 158, 708, 1028
HpyAV CCTTC 4 cut(s) 24, 68, 206, 806
HpyCH4III ACNGT 3 cut(s) 464, 662, 736
HpyCH4IV ACGT 2 cut(s) 116, 549
HpyCH4V TGCA 4 cut(s) 27, 166, 239, 380
HpyF10VI GCNNNNNNNGC 6 cut(s) 38, 296, 305, 479, 494, 561
HpyF3I CTNAG 3 cut(s) 87, 276, 944
HpySE526I ACGT 2 cut(s) 116, 549
Hsp92I GRCGYC 1 cut(s) 629
Hsp92II CATG 2 cut(s) 435, 895
Kpn2I TCCGGA 1 cut(s) 270
Kzo9I GATC 4 cut(s) 172, 243, 571, 861
LguI GCTCTTC 1 cut(s) 601
LmnI GCTCC 3 cut(s) 38, 295, 851
Lsp1109I GCAGC 2 cut(s) 274, 897
LweI GCATC 5 cut(s) 80, 226, 248, 274, 757
MaeI CTAG 1 cut(s) 575
MaeII ACGT 2 cut(s) 116, 549
MaeIII GTNAC 4 cut(s) 593, 625, 757, 824
MalI GATC 4 cut(s) 174, 245, 573, 863
MboI GATC 4 cut(s) 172, 243, 571, 861
MboII GAAGA 4 cut(s) 194, 378, 469, 618
MhlI GDGCHC 3 cut(s) 43, 122, 613
MluCI AATT 5 cut(s) 45, 256, 301, 982, 1005
MlyI GAGTC 3 cut(s) 378, 754, 838
Mph1103I ATGCAT 1 cut(s) 241
MroI TCCGGA 1 cut(s) 270
MseI TTAA 2 cut(s) 318, 531
MslI CAYNNNNRTG 1 cut(s) 896
MspI CCGG 3 cut(s) 271, 440, 588
MspR9I CCNGG 3 cut(s) 363, 830, 849
Mva1269I GAATGC 1 cut(s) 911
MvaI CCWGG 3 cut(s) 363, 830, 849
MvnI CGCG 1 cut(s) 188
MwoI GCNNNNNNNGC 6 cut(s) 38, 296, 305, 479, 494, 561
NcoI CCATGG 1 cut(s) 431
NdeII GATC 4 cut(s) 172, 243, 571, 861
NlaIII CATG 2 cut(s) 435, 895
NlaIV GGNNCC 4 cut(s) 40, 444, 733, 853
NmuCI GTSAC 4 cut(s) 593, 625, 757, 824
NsiI ATGCAT 1 cut(s) 241
NspI RCATGY 1 cut(s) 895
PaeR7I CTCGAG 1 cut(s) 309
PceI AGGCCT 1 cut(s) 97
PciI ACATGT 1 cut(s) 891
PciSI GCTCTTC 1 cut(s) 601
PctI GAATGC 1 cut(s) 911
PfeI GAWTC 1 cut(s) 997
PfoI TCCNGGA 1 cut(s) 847
PkrI GCNGC 3 cut(s) 187, 289, 887
PleI GAGTC 3 cut(s) 377, 754, 838
PpsI GAGTC 3 cut(s) 377, 754, 838
PscI ACATGT 1 cut(s) 891
PshAI GACNNNNGTC 1 cut(s) 672
Psp6I CCWGG 3 cut(s) 361, 828, 847
PspGI CCWGG 3 cut(s) 361, 828, 847
PspN4I GGNNCC 4 cut(s) 40, 444, 733, 853
PspPI GGNCC 1 cut(s) 428
PspXI VCTCGAGB 1 cut(s) 309
PsrI GAACNNNNNNTAC 2 cut(s) 671, 703
PstI CTGCAG 1 cut(s) 168
RsaI GTAC 1 cut(s) 655
RsaNI GTAC 1 cut(s) 654
RseI CAYNNNNRTG 1 cut(s) 896
SapI GCTCTTC 1 cut(s) 601
SaqAI TTAA 2 cut(s) 318, 531
SatI GCNGC 3 cut(s) 186, 288, 886
Sau3AI GATC 4 cut(s) 172, 243, 571, 861
Sau96I GGNCC 1 cut(s) 428
SchI GAGTC 3 cut(s) 378, 754, 838
ScrFI CCNGG 3 cut(s) 363, 830, 849
SduI GDGCHC 3 cut(s) 43, 122, 613
SfaNI GCATC 5 cut(s) 80, 226, 248, 274, 757
SfcI CTRYAG 1 cut(s) 164
Sfr274I CTCGAG 1 cut(s) 309
SinI GGWCC 1 cut(s) 428
SlaI CTCGAG 1 cut(s) 309
SmiMI CAYNNNNRTG 1 cut(s) 896
SmlI CTYRAG 3 cut(s) 309, 347, 963
SmoI CTYRAG 3 cut(s) 309, 347, 963
Sse9I AATT 5 cut(s) 45, 256, 301, 982, 1005
SseBI AGGCCT 1 cut(s) 97
SsiI CCGC 2 cut(s) 186, 562
SspMI CTAG 1 cut(s) 575
StuI AGGCCT 1 cut(s) 97
StyD4I CCNGG 3 cut(s) 361, 828, 847
StyI CCWWGG 1 cut(s) 431
TaaI ACNGT 3 cut(s) 464, 662, 736
TaiI ACGT 2 cut(s) 119, 552
TaqI TCGA 9 cut(s) 156, 242, 310, 696, 706, 750, 774, 842, 907
TasI AATT 5 cut(s) 45, 256, 301, 982, 1005
TauI GCSGC 1 cut(s) 188
TfiI GAWTC 1 cut(s) 997
Tru1I TTAA 2 cut(s) 318, 531
Tru9I TTAA 2 cut(s) 318, 531
TscAI CASTG 3 cut(s) 34, 417, 469
TseFI GTSAC 4 cut(s) 593, 625, 757, 824
TseI GCWGC 2 cut(s) 287, 885
Tsp45I GTSAC 4 cut(s) 593, 625, 757, 824
TspDTI ATGAA 4 cut(s) 6, 174, 350, 904
TspGWI ACGGA 5 cut(s) 435, 498, 692, 738, 886
TspRI CASTG 3 cut(s) 34, 417, 469
VpaK11BI GGWCC 1 cut(s) 428
XapI RAATTY 1 cut(s) 301
XceI RCATGY 1 cut(s) 895
XhoI CTCGAG 1 cut(s) 309
XspI CTAG 1 cut(s) 575
Zsp2I ATGCAT 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.