Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007121.1

Orthogroup ID

OG0002716

Physical Location & Seq

Genomic Coordinates Forward (+)

8667 .. 11345

Gene Structure 2679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007121.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

atgccttcttctctatatcactgtgcaatggcaactactagttttgcagttttctttgcattgttgatcttattgtgtgcaggaggatatggtgaggctcagctgaccccgacgttctacaatgaagcatgccccgatgtgaatgtcactagcattgtccgtggagtcattcaggaagctttgcagacggatccacatatcgctgcaagcctcattaggcttcacttccatgattgctttgtcaatggttgtgatgcatcaattttgctggacaacagtagcagtgtcgatggcatagacagcgagaaagcagcctttccgaatgttaattcagcgagaggatttgatgttgtggacaagattaagactgcattggagaatgcttgtcccagcacggtttcttgtgctgatattcttgccattgcagcagaagagtctgtttctttgtctggaggcccctcatggacagtcctactaggaagaagggatggaacaacagcaaaccgaaccgctgctaatgaagcccttccagctcccacttcaaaccttgatgtactcaagtccaagttctcagctgtaggcctaaacaccaccgatctgtgtcagtttttcactgatcgattatacaacttcaacaacacagggagtcctgaccaaaccttaaactcgacctacatagaaaccttgagtgacatatgcccacaaaatgggaatgggagtgtcctggccaattttgatccctcaacacctgatggtttcgacagcaactatttctctaatcttcaagttcataagggtctactccaaagcgaccaagagctgttttcgactagtggggctgataccattgatatagttaacaacttcagcgttaatcagaccacattctttgagagctttgtggaatcgatgattaaaatggggaatataagcctcttgacaggaactgatggagagattcgattgaactgcagtagggttaacgaagattcatctggatcatctgctgctttgctagctgagtactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004601 GO:0005488 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009505 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009636 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009826 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016209 GO:0016491 GO:0016684 GO:0020037 GO:0030312 GO:0031090 GO:0031347 GO:0031349 GO:0032502 GO:0032989 GO:0035821 GO:0040007 GO:0040008 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0045926 GO:0046906 GO:0048037 GO:0048046 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0048589 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0055114 GO:0060560 GO:0065007 GO:0070887 GO:0071840 GO:0071944 GO:0072593 GO:0075136 GO:0080134 GO:0097159 GO:0097237 GO:0098542 GO:0098588 GO:0098754 GO:0098805 GO:0098869 GO:1901363 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

342

Amino Acids

36.48

Weight (kDa)

4.28

Isoelectric Point (pI)

37.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38380 AT2G38390
malus_domestica	MD03G1012700.v1.1 MD03G1012800.v1.1 MD03G1012900.v1.1 MD03G1013200.v1.1 MD03G1013300.v1.1 MD03G1013600.v1.1 MD03G1013700.v1.1
prunus_persica	Prupe.6G013200_v2.0.a1 Prupe.6G013400_v2.0.a1
pyrus_communis	pycom03g01150 pycom03g01160
rosa_chinensis	RchiOBHm_Chr5g0053991 RchiOBHm_Chr5g0080801 RchiOBHm_Chr5g0080821 RchiOBHm_Chr5g0080921 RchiOBHm_Chr5g0080961
rosa_laevigata	RLG00000036883 RLG00000036884 RLG00000036893 RLG00000036895 RLG00000036898 RLG00000036900
rosa_multiflora	Rmu_sc0003177.1_g000023 Rmu_sc0007121.1_g000003
rosa_rugosa	Rorug05G0471800 Rorug05G0472100.1 Rorug05G0472200
rosa_samantha	Rh5BG548000 Rh5BG548500 Rh5BG548700 Rh5CG571500 Rh5CG571700 Rh5DG559100 Rh5DG559300
rosa_wichuraiana	Rw5G048730 Rw5G048790 Rw5G049310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	707
AccI	GTMKAC	1 cut(s)	799
AciI	CCGC	1 cut(s)	510
AclWI	GGATC	4 cut(s)	185, 198, 731, 1006
AcoI	YGGCCR	1 cut(s)	726
AcuI	CTGAAG	1 cut(s)	850
AfaI	GTAC	2 cut(s)	555, 1025
AfiI	CCNNNNNNNGG	1 cut(s)	707
AgsI	TTSAA	4 cut(s)	543, 634, 785, 967
AhlI	ACTAGT	2 cut(s)	38, 830
AjnI	CCWGG	1 cut(s)	723
AluBI	AGCT	7 cut(s)	103, 179, 533, 575, 820, 897, 1019
AluI	AGCT	7 cut(s)	103, 179, 533, 575, 820, 897, 1019
AlwI	GGATC	4 cut(s)	185, 198, 731, 1006
AlwNI	CAGNNNCTG	1 cut(s)	947
AoxI	GGCC	3 cut(s)	454, 580, 726
ApeKI	GCWGC	5 cut(s)	203, 311, 425, 512, 1007
Asp700I	GAANNNNTTC	1 cut(s)	525
AspS9I	GGNCC	1 cut(s)	455
AsuHPI	GGTGA	1 cut(s)	104
AsuNHI	GCTAGC	1 cut(s)	1015
BalI	TGGCCA	1 cut(s)	728
BamHI	GGATCC	1 cut(s)	190
BbvI	GCAGC	5 cut(s)	190, 323, 437, 499, 994
BccI	CCATC	4 cut(s)	284, 482, 746, 944
BcgI	CGANNNNNNTGC	2 cut(s)	951, 985
BciT130I	CCWGG	1 cut(s)	725
BcuI	ACTAGT	2 cut(s)	38, 830
BfaI	CTAG	5 cut(s)	39, 150, 476, 831, 1016
BfmI	CTRYAG	2 cut(s)	576, 970
BisI	GCNGC	5 cut(s)	204, 312, 426, 513, 1008
BlpI	GCTNAGC	1 cut(s)	99
BlsI	GCNGC	5 cut(s)	205, 313, 427, 514, 1009
BmcAI	AGTACT	1 cut(s)	1025
Bme1390I	CCNGG	1 cut(s)	725
BmgT120I	GGNCC	1 cut(s)	455
BmiI	GGNNCC	2 cut(s)	192, 457
BmrFI	CCNGG	1 cut(s)	725
BmsI	GCATC	2 cut(s)	244, 266
BmtI	GCTAGC	1 cut(s)	1019
BpmI	CTGGAG	1 cut(s)	471
Bpu1102I	GCTNAGC	1 cut(s)	99
BpuEI	CTTGAG	2 cut(s)	542, 706
Bsa29I	ATCGAT	2 cut(s)	619, 908
BsaJI	CCNNGG	1 cut(s)	160
Bsc4I	CCNNNNNNNGG	1 cut(s)	707
Bse3DI	GCAATG	2 cut(s)	33, 420
BseBI	CCWGG	1 cut(s)	725
BseCI	ATCGAT	2 cut(s)	619, 908
BseDI	CCNNGG	1 cut(s)	160
BseGI	GGATG	1 cut(s)	493
BseLI	CCNNNNNNNGG	1 cut(s)	707
BseMI	GCAATG	2 cut(s)	33, 420
BseMII	CTCAG	3 cut(s)	113, 585, 1011
BseXI	GCAGC	5 cut(s)	190, 323, 437, 499, 994
BseYI	CCCAGC	1 cut(s)	389
BsgI	GTGCAG	1 cut(s)	99
BshFI	GGCC	3 cut(s)	456, 582, 728
BshVI	ATCGAT	2 cut(s)	619, 908
BslFI	GGGAC	1 cut(s)	372
BslI	CCNNNNNNNGG	1 cut(s)	707
BsmFI	GGGAC	1 cut(s)	372
BsmI	GAATGC	1 cut(s)	385
BsnI	GGCC	3 cut(s)	456, 582, 728
Bsp143I	GATC	6 cut(s)	66, 190, 595, 616, 736, 998
Bsp1720I	GCTNAGC	1 cut(s)	99
BspACI	CCGC	1 cut(s)	510
BspANI	GGCC	3 cut(s)	456, 582, 728
BspCNI	CTCAG	3 cut(s)	112, 584, 1012
BspDI	ATCGAT	2 cut(s)	619, 908
BspLI	GGNNCC	2 cut(s)	192, 457
BspMAI	CTGCAG	1 cut(s)	974
BspOI	GCTAGC	1 cut(s)	1019
BspPI	GGATC	4 cut(s)	185, 198, 731, 1006
BsrDI	GCAATG	2 cut(s)	33, 420
BssECI	CCNNGG	1 cut(s)	160
BssMI	GATC	6 cut(s)	66, 190, 595, 616, 736, 998
Bst2UI	CCWGG	1 cut(s)	725
Bst4CI	ACNGT	4 cut(s)	23, 278, 397, 469
Bst6I	CTCTTC	1 cut(s)	426
BstC8I	GCNNGC	3 cut(s)	130, 208, 1017
BstDEI	CTNAG	3 cut(s)	99, 571, 1020
BstDSI	CCRYGG	1 cut(s)	160
BstF5I	GGATG	1 cut(s)	493
BstKTI	GATC	6 cut(s)	69, 193, 598, 619, 739, 1001
BstMBI	GATC	6 cut(s)	66, 190, 595, 616, 736, 998
BstMWI	GCNNNNNNNGC	5 cut(s)	300, 425, 521, 530, 1016
BstNI	CCWGG	1 cut(s)	725
BstNSI	RCATGY	1 cut(s)	132
BstSCI	CCNGG	1 cut(s)	723
BstSFI	CTRYAG	2 cut(s)	576, 970
BstV1I	GCAGC	5 cut(s)	190, 323, 437, 499, 994
BstX2I	RGATCY	1 cut(s)	190
BstYI	RGATCY	1 cut(s)	190
Bsu15I	ATCGAT	2 cut(s)	619, 908
BsuRI	GGCC	3 cut(s)	456, 582, 728
BsuTUI	ATCGAT	2 cut(s)	619, 908
BtgI	CCRYGG	1 cut(s)	160
BtsCI	GGATG	1 cut(s)	493
BtsI	GCAGTG	1 cut(s)	289
BtsIMutI	CAGTG	3 cut(s)	19, 289, 612
Cac8I	GCNNGC	3 cut(s)	130, 208, 1017
CaiI	CAGNNNCTG	1 cut(s)	947
Cfr13I	GGNCC	1 cut(s)	455
ClaI	ATCGAT	2 cut(s)	619, 908
Csp6I	GTAC	2 cut(s)	554, 1024
CspCI	CAANNNNNGTGG	2 cut(s)	871, 906
CviAII	CATG	3 cut(s)	129, 230, 462
CviQI	GTAC	2 cut(s)	554, 1024
DdeI	CTNAG	3 cut(s)	99, 571, 1020
DpnI	GATC	6 cut(s)	68, 192, 597, 618, 738, 1000
DpnII	GATC	6 cut(s)	66, 190, 595, 616, 736, 998
EaeI	YGGCCR	1 cut(s)	726
Eam1104I	CTCTTC	1 cut(s)	426
EarI	CTCTTC	1 cut(s)	426
Eco147I	AGGCCT	1 cut(s)	582
Eco57I	CTGAAG	1 cut(s)	850
EcoO109I	RGGNCCY	1 cut(s)	455
EcoRII	CCWGG	1 cut(s)	723
EcoT22I	ATGCAT	1 cut(s)	259
FaeI	CATG	3 cut(s)	132, 233, 465
FaqI	GGGAC	1 cut(s)	372
FatI	CATG	3 cut(s)	128, 229, 461
FauNDI	CATATG	1 cut(s)	695
FblI	GTMKAC	1 cut(s)	799
Fnu4HI	GCNGC	5 cut(s)	204, 312, 426, 513, 1008
FokI	GGATG	1 cut(s)	500
Fsp4HI	GCNGC	5 cut(s)	204, 312, 426, 513, 1008
FspBI	CTAG	5 cut(s)	39, 150, 476, 831, 1016
GluI	GCNGC	5 cut(s)	204, 312, 426, 513, 1008
GsaI	CCCAGC	1 cut(s)	393
GsuI	CTGGAG	1 cut(s)	471
HaeIII	GGCC	3 cut(s)	456, 582, 728
Hin1II	CATG	3 cut(s)	132, 233, 465
HincII	GTYRAC	2 cut(s)	859, 982
HindII	GTYRAC	2 cut(s)	859, 982
HindIII	AAGCTT	1 cut(s)	177
HinfI	GANTC	6 cut(s)	165, 434, 646, 905, 958, 989
HpaI	GTTAAC	2 cut(s)	859, 982
HphI	GGTGA	1 cut(s)	104
Hpy166II	GTNNAC	4 cut(s)	355, 800, 859, 982
Hpy188I	TCNGA	2 cut(s)	321, 879
Hpy188III	TCNNGA	5 cut(s)	173, 450, 650, 937, 996
Hpy8I	GTNNAC	4 cut(s)	355, 800, 859, 982
Hpy99I	CGWCG	1 cut(s)	115
HpyAV	CCTTC	3 cut(s)	15, 477, 536
HpyCH4III	ACNGT	4 cut(s)	23, 278, 397, 469
HpyCH4IV	ACGT	1 cut(s)	113
HpyF10VI	GCNNNNNNNGC	5 cut(s)	300, 425, 521, 530, 1016
HpyF3I	CTNAG	3 cut(s)	99, 571, 1020
HpySE526I	ACGT	1 cut(s)	113
Hsp92II	CATG	3 cut(s)	132, 233, 465
KspAI	GTTAAC	2 cut(s)	859, 982
Kzo9I	GATC	6 cut(s)	66, 190, 595, 616, 736, 998
LmnI	GCTCC	1 cut(s)	538
Lsp1109I	GCAGC	5 cut(s)	190, 323, 437, 499, 994
LweI	GCATC	2 cut(s)	244, 266
MaeI	CTAG	5 cut(s)	39, 150, 476, 831, 1016
MaeII	ACGT	1 cut(s)	113
MaeIII	GTNAC	2 cut(s)	145, 689
MalI	GATC	6 cut(s)	68, 192, 597, 618, 738, 1000
MboI	GATC	6 cut(s)	66, 190, 595, 616, 736, 998
MboII	GAAGA	4 cut(s)	443, 492, 773, 998
MflI	RGATCY	1 cut(s)	190
MlsI	TGGCCA	1 cut(s)	728
MluCI	AATT	3 cut(s)	261, 328, 730
MluNI	TGGCCA	1 cut(s)	728
MlyI	GAGTC	3 cut(s)	174, 443, 655
MnlI	CCTC	8 cut(s)	77, 88, 221, 332, 446, 469, 751, 944
Mox20I	TGGCCA	1 cut(s)	728
Mph1103I	ATGCAT	1 cut(s)	259
MroXI	GAANNNNTTC	1 cut(s)	525
MscI	TGGCCA	1 cut(s)	728
MseI	TTAA	7 cut(s)	327, 363, 662, 858, 873, 915, 981
MslI	CAYNNNNRTG	1 cut(s)	228
Msp20I	TGGCCA	1 cut(s)	728
MspA1I	CMGCKG	3 cut(s)	103, 512, 575
MspR9I	CCNGG	1 cut(s)	725
Mva1269I	GAATGC	1 cut(s)	385
MvaI	CCWGG	1 cut(s)	725
MwoI	GCNNNNNNNGC	5 cut(s)	300, 425, 521, 530, 1016
NdeI	CATATG	1 cut(s)	695
NdeII	GATC	6 cut(s)	66, 190, 595, 616, 736, 998
NheI	GCTAGC	1 cut(s)	1015
NlaIII	CATG	3 cut(s)	132, 233, 465
NlaIV	GGNNCC	2 cut(s)	192, 457
NmuCI	GTSAC	2 cut(s)	145, 689
NsiI	ATGCAT	1 cut(s)	259
NspI	RCATGY	1 cut(s)	132
PaeI	GCATGC	1 cut(s)	132
PceI	AGGCCT	1 cut(s)	582
PctI	GAATGC	1 cut(s)	385
PdmI	GAANNNNTTC	1 cut(s)	525
PfeI	GAWTC	3 cut(s)	905, 958, 989
PflMI	CCANNNNNTGG	1 cut(s)	707
PkrI	GCNGC	5 cut(s)	205, 313, 427, 514, 1009
PleI	GAGTC	3 cut(s)	173, 442, 654
PpsI	GAGTC	3 cut(s)	173, 442, 654
Psp6I	CCWGG	1 cut(s)	723
PspFI	CCCAGC	1 cut(s)	389
PspGI	CCWGG	1 cut(s)	723
PspN4I	GGNNCC	2 cut(s)	192, 457
PspPI	GGNCC	1 cut(s)	455
PstI	CTGCAG	1 cut(s)	974
PstNI	CAGNNNCTG	1 cut(s)	947
PsuI	RGATCY	1 cut(s)	190
PvuII	CAGCTG	2 cut(s)	103, 575
RsaI	GTAC	2 cut(s)	555, 1025
RsaNI	GTAC	2 cut(s)	554, 1024
RseI	CAYNNNNRTG	1 cut(s)	228
SaqAI	TTAA	7 cut(s)	327, 363, 662, 858, 873, 915, 981
SatI	GCNGC	5 cut(s)	204, 312, 426, 513, 1008
Sau3AI	GATC	6 cut(s)	66, 190, 595, 616, 736, 998
Sau96I	GGNCC	1 cut(s)	455
ScaI	AGTACT	1 cut(s)	1025
SchI	GAGTC	3 cut(s)	174, 443, 655
ScrFI	CCNGG	1 cut(s)	725
SfaNI	GCATC	2 cut(s)	244, 266
SfcI	CTRYAG	2 cut(s)	576, 970
SmiMI	CAYNNNNRTG	1 cut(s)	228
SmlI	CTYRAG	2 cut(s)	557, 685
SmoI	CTYRAG	2 cut(s)	557, 685
SpeI	ACTAGT	2 cut(s)	38, 830
SphI	GCATGC	1 cut(s)	132
Sse9I	AATT	3 cut(s)	261, 328, 730
SseBI	AGGCCT	1 cut(s)	582
SsiI	CCGC	1 cut(s)	510
SspMI	CTAG	5 cut(s)	39, 150, 476, 831, 1016
StuI	AGGCCT	1 cut(s)	582
StyD4I	CCNGG	1 cut(s)	723
TaaI	ACNGT	4 cut(s)	23, 278, 397, 469
TaiI	ACGT	1 cut(s)	116
TaqI	TCGA	7 cut(s)	288, 619, 668, 759, 827, 908, 961
TasI	AATT	3 cut(s)	261, 328, 730
TatI	WGTACW	2 cut(s)	553, 1023
TfiI	GAWTC	3 cut(s)	905, 958, 989
Tru1I	TTAA	7 cut(s)	327, 363, 662, 858, 873, 915, 981
Tru9I	TTAA	7 cut(s)	327, 363, 662, 858, 873, 915, 981
TscAI	CASTG	3 cut(s)	26, 289, 619
TseFI	GTSAC	2 cut(s)	145, 689
TseI	GCWGC	5 cut(s)	203, 311, 425, 512, 1007
Tsp45I	GTSAC	2 cut(s)	145, 689
TspDTI	ATGAA	4 cut(s)	138, 534, 779, 981
TspGWI	ACGGA	2 cut(s)	149, 203
TspRI	CASTG	3 cut(s)	26, 289, 619
Van91I	CCANNNNNTGG	1 cut(s)	707
XceI	RCATGY	1 cut(s)	132
XmiI	GTMKAC	1 cut(s)	799
XmnI	GAANNNNTTC	1 cut(s)	525
XspI	CTAG	5 cut(s)	39, 150, 476, 831, 1016
ZrmI	AGTACT	1 cut(s)	1025
Zsp2I	ATGCAT	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.