Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002716

Physical Location & Seq

Genomic Coordinates Forward (+)

86331910 .. 86332224

Gene Structure 315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG559300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGACAACATTGATCGGATTTGCATATTCACAGGTGCTCACACATTTGGACGCGCCCAGTGTCAGTTTTTCATTGATCGATTATACGACTTCAACAACACAGGGAGTCCTGACCAAACCTTAAACTCGACCTACATAGAAACCTTGAGTGACATATGCCCACAAAATGGGAATGGGAGTGTCCTGGCCAATTTTGATCCCTCAACACCTGATGGTTTCGACAGCAACTATTTCTCTAACTTCAAGTTCATAAGGGTCTACTCCAAAGCGACCAAGAGCTGTTTTCAACTAGCGGGGCTGATACCATTGACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004601 GO:0005488 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009505 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009636 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009826 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016209 GO:0016491 GO:0016684 GO:0020037 GO:0030312 GO:0031090 GO:0031347 GO:0031349 GO:0032502 GO:0032989 GO:0035821 GO:0040007 GO:0040008 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0045926 GO:0046906 GO:0048037 GO:0048046 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0048589 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0055114 GO:0060560 GO:0065007 GO:0070887 GO:0071840 GO:0071944 GO:0072593 GO:0075136 GO:0080134 GO:0097159 GO:0097237 GO:0098542 GO:0098588 GO:0098754 GO:0098805 GO:0098869 GO:1901363 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

104

Amino Acids

11.64

Weight (kDa)

4.7

Isoelectric Point (pI)

19.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	7 - 81	1.2e-15	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0002716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38380 AT2G38390
malus_domestica	MD03G1012700.v1.1 MD03G1012800.v1.1 MD03G1012900.v1.1 MD03G1013200.v1.1 MD03G1013300.v1.1 MD03G1013600.v1.1 MD03G1013700.v1.1
prunus_persica	Prupe.6G013200_v2.0.a1 Prupe.6G013400_v2.0.a1
pyrus_communis	pycom03g01150 pycom03g01160
rosa_chinensis	RchiOBHm_Chr5g0053991 RchiOBHm_Chr5g0080801 RchiOBHm_Chr5g0080821 RchiOBHm_Chr5g0080921 RchiOBHm_Chr5g0080961
rosa_laevigata	RLG00000036883 RLG00000036884 RLG00000036893 RLG00000036895 RLG00000036898 RLG00000036900
rosa_multiflora	Rmu_sc0003177.1_g000023 Rmu_sc0007121.1_g000003
rosa_rugosa	Rorug05G0471800 Rorug05G0472100.1 Rorug05G0472200
rosa_samantha	Rh5BG548000 Rh5BG548500 Rh5BG548700 Rh5CG571500 Rh5CG571700 Rh5DG559100 Rh5DG559300
rosa_wichuraiana	Rw5G048730 Rw5G048790 Rw5G049310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	167
AccI	GTMKAC	1 cut(s)	258
AccII	CGCG	1 cut(s)	54
AciI	CCGC	1 cut(s)	293
AclWI	GGATC	1 cut(s)	191
AcoI	YGGCCR	1 cut(s)	186
AfiI	CCNNNNNNNGG	1 cut(s)	167
AgsI	TTSAA	3 cut(s)	94, 244, 287
AjnI	CCWGG	1 cut(s)	183
AluBI	AGCT	1 cut(s)	279
AluI	AGCT	1 cut(s)	279
Alw21I	GWGCWC	1 cut(s)	40
AlwI	GGATC	1 cut(s)	191
AoxI	GGCC	1 cut(s)	186
AspLEI	GCGC	1 cut(s)	56
BalI	TGGCCA	1 cut(s)	188
Bbv12I	GWGCWC	1 cut(s)	40
BccI	CCATC	1 cut(s)	206
BciT130I	CCWGG	1 cut(s)	185
BfaI	CTAG	1 cut(s)	290
Bme1390I	CCNGG	1 cut(s)	185
BmrFI	CCNGG	1 cut(s)	185
BmrI	ACTGGG	1 cut(s)	52
BmuI	ACTGGG	1 cut(s)	52
BpuEI	CTTGAG	1 cut(s)	166
Bsa29I	ATCGAT	1 cut(s)	79
Bsc4I	CCNNNNNNNGG	1 cut(s)	167
Bse1I	ACTGG	1 cut(s)	58
BseBI	CCWGG	1 cut(s)	185
BseCI	ATCGAT	1 cut(s)	79
BseLI	CCNNNNNNNGG	1 cut(s)	167
BseNI	ACTGG	1 cut(s)	58
Bsh1236I	CGCG	1 cut(s)	54
BshFI	GGCC	1 cut(s)	188
BshVI	ATCGAT	1 cut(s)	79
BsiHKAI	GWGCWC	1 cut(s)	40
BslI	CCNNNNNNNGG	1 cut(s)	167
BsnI	GGCC	1 cut(s)	188
Bsp1286I	GDGCHC	1 cut(s)	40
Bsp143I	GATC	3 cut(s)	13, 76, 196
BspACI	CCGC	1 cut(s)	293
BspANI	GGCC	1 cut(s)	188
BspDI	ATCGAT	1 cut(s)	79
BspFNI	CGCG	1 cut(s)	54
BspPI	GGATC	1 cut(s)	191
BsrI	ACTGG	1 cut(s)	58
BssMI	GATC	3 cut(s)	13, 76, 196
Bst2UI	CCWGG	1 cut(s)	185
BstFNI	CGCG	1 cut(s)	54
BstHHI	GCGC	1 cut(s)	56
BstKTI	GATC	3 cut(s)	16, 79, 199
BstMBI	GATC	3 cut(s)	13, 76, 196
BstNI	CCWGG	1 cut(s)	185
BstSCI	CCNGG	1 cut(s)	183
BstUI	CGCG	1 cut(s)	54
Bsu15I	ATCGAT	1 cut(s)	79
BsuRI	GGCC	1 cut(s)	188
BsuTUI	ATCGAT	1 cut(s)	79
BtsIMutI	CAGTG	1 cut(s)	65
CfoI	GCGC	1 cut(s)	56
ClaI	ATCGAT	1 cut(s)	79
CseI	GACGC	1 cut(s)	60
CviJI	RGCY	3 cut(s)	188, 279, 298
CviKI_1	RGCY	3 cut(s)	188, 279, 298
DpnI	GATC	3 cut(s)	15, 78, 198
DpnII	GATC	3 cut(s)	13, 76, 196
EaeI	YGGCCR	1 cut(s)	186
EcoRII	CCWGG	1 cut(s)	183
FaiI	YATR	7 cut(s)	26, 85, 137, 155, 157, 251, 313
FauI	CCCGC	1 cut(s)	286
FauNDI	CATATG	1 cut(s)	155
FblI	GTMKAC	1 cut(s)	258
FspBI	CTAG	1 cut(s)	290
GlaI	GCGC	1 cut(s)	55
HaeIII	GGCC	1 cut(s)	188
HgaI	GACGC	1 cut(s)	60
HhaI	GCGC	1 cut(s)	56
Hin6I	GCGC	1 cut(s)	54
HinP1I	GCGC	1 cut(s)	54
HinfI	GANTC	1 cut(s)	106
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188I	TCNGA	1 cut(s)	18
Hpy188III	TCNNGA	1 cut(s)	110
Hpy8I	GTNNAC	1 cut(s)	259
HpyCH4V	TGCA	1 cut(s)	24
HspAI	GCGC	1 cut(s)	54
Kzo9I	GATC	3 cut(s)	13, 76, 196
LpnPI	CCDG	7 cut(s)	18, 71, 87, 123, 170, 197, 222
MaeI	CTAG	1 cut(s)	290
MaeIII	GTNAC	1 cut(s)	149
MalI	GATC	3 cut(s)	15, 78, 198
MboI	GATC	3 cut(s)	13, 76, 196
MhlI	GDGCHC	1 cut(s)	40
MlsI	TGGCCA	1 cut(s)	188
MluCI	AATT	1 cut(s)	190
MluNI	TGGCCA	1 cut(s)	188
MlyI	GAGTC	1 cut(s)	115
MnlI	CCTC	1 cut(s)	211
Mox20I	TGGCCA	1 cut(s)	188
MscI	TGGCCA	1 cut(s)	188
MseI	TTAA	1 cut(s)	122
Msp20I	TGGCCA	1 cut(s)	188
MspR9I	CCNGG	1 cut(s)	185
MvaI	CCWGG	1 cut(s)	185
MvnI	CGCG	1 cut(s)	54
NdeI	CATATG	1 cut(s)	155
NdeII	GATC	3 cut(s)	13, 76, 196
NmuCI	GTSAC	1 cut(s)	149
PflMI	CCANNNNNTGG	1 cut(s)	167
PleI	GAGTC	1 cut(s)	114
PpsI	GAGTC	1 cut(s)	114
Psp6I	CCWGG	1 cut(s)	183
PspGI	CCWGG	1 cut(s)	183
SaqAI	TTAA	1 cut(s)	122
Sau3AI	GATC	3 cut(s)	13, 76, 196
SchI	GAGTC	1 cut(s)	115
ScrFI	CCNGG	1 cut(s)	185
SduI	GDGCHC	1 cut(s)	40
SetI	ASST	6 cut(s)	37, 122, 134, 146, 211, 281
SmlI	CTYRAG	1 cut(s)	145
SmoI	CTYRAG	1 cut(s)	145
Sse9I	AATT	1 cut(s)	190
SsiI	CCGC	1 cut(s)	293
SspMI	CTAG	1 cut(s)	290
StyD4I	CCNGG	1 cut(s)	183
TaqI	TCGA	3 cut(s)	79, 128, 219
TasI	AATT	1 cut(s)	190
Tru1I	TTAA	1 cut(s)	122
Tru9I	TTAA	1 cut(s)	122
TscAI	CASTG	1 cut(s)	65
TseFI	GTSAC	1 cut(s)	149
Tsp45I	GTSAC	1 cut(s)	149
TspDTI	ATGAA	2 cut(s)	61, 238
TspRI	CASTG	1 cut(s)	65
Van91I	CCANNNNNTGG	1 cut(s)	167
XmiI	GTMKAC	1 cut(s)	258
XspI	CTAG	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.