RLG00000036884

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0002716
Physical Location & Seq
Reverse (-)
86105226 .. 86106531
1306 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036884

Sequence Viewer

Length: 564 bp
ATGGGAACCGGTTTTACCGGGTATAGCCAGTTGTCGTGGAGTTTTGGGTTTTCGGGTTTGGTCTTCCCCCCGTTTGCTCAGTTTCACGCGGAGAGGAGCAGCATTGCAATGGCAACTACTAGTACTGCAGTTTGCTTTGCATTGTTGATCTTATTTTGTGCAGGAGGATATGGTGAGGCTCAGCTGACCCCGACATTCTACAATGAAGCATGCGCTTATGTGAATGTCACTAGCATTGGTTGTGATGCATCAATTTTGCTCAACAACAGTAGCAGTGTCGATGGCATTGACAGCGAGAAAGCAGCCTTTCCGAATGTCAATTCAGCGAGAGGATTTGATGTTGTGGACAAGATTAAGGCTGCATTGGAGAATGCTTGTCCCAGCACGGTTTCTTGTGCTGATATTCTTGCCATTGCAGCAGAAGAGTCTGTTTCTTTTTCTGGGGGCCCCTCATGGACAGTCCTACTAGGAAGAAGGGATGGAACAACAGCAAACCGAACCGCTGCTAATGAAGCCCTTCCAGCTCCCACTTCAAACCTTGATGTACTCAAGTCCAAGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004601 GO:0005488 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009505 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009636 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009826 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016209 GO:0016491 GO:0016684 GO:0020037 GO:0030312 GO:0031090 GO:0031347 GO:0031349 GO:0032502 GO:0032989 GO:0035821 GO:0040007 GO:0040008 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0045926 GO:0046906 GO:0048037 GO:0048046 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0048589 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0055114 GO:0060560 GO:0065007 GO:0070887 GO:0071840 GO:0071944 GO:0072593 GO:0075136 GO:0080134 GO:0097159 GO:0097237 GO:0098542 GO:0098588 GO:0098754 GO:0098805 GO:0098869 GO:1901363 GO:1990748
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

188

Amino Acids

19.48

Weight (kDa)

4.61

Isoelectric Point (pI)

40.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 79 - 187 4.8e-33 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 89
AciI CCGC 2 cut(s) 89, 501
AfaI GTAC 2 cut(s) 124, 546
AgeI ACCGGT 1 cut(s) 8
AgsI TTSAA 1 cut(s) 534
AhlI ACTAGT 1 cut(s) 119
AluBI AGCT 2 cut(s) 184, 524
AluI AGCT 2 cut(s) 184, 524
AoxI GGCC 1 cut(s) 445
ApaI GGGCCC 1 cut(s) 449
ApeKI GCWGC 5 cut(s) 99, 302, 359, 416, 503
AsiGI ACCGGT 1 cut(s) 8
Asp700I GAANNNNTTC 1 cut(s) 516
AspLEI GCGC 1 cut(s) 215
AspS9I GGNCC 2 cut(s) 445, 446
AsuC2I CCSGG 1 cut(s) 19
AsuHPI GGTGA 1 cut(s) 185
BaeGI GKGCMC 1 cut(s) 449
BanII GRGCYC 1 cut(s) 449
BbsI GAAGAC 1 cut(s) 55
BbvI GCAGC 5 cut(s) 111, 314, 346, 428, 490
BccI CCATC 2 cut(s) 275, 473
BcnI CCSGG 1 cut(s) 19
BcuI ACTAGT 1 cut(s) 119
BfaI CTAG 3 cut(s) 120, 231, 467
BfmI CTRYAG 1 cut(s) 126
BisI GCNGC 5 cut(s) 100, 303, 360, 417, 504
BlpI GCTNAGC 1 cut(s) 180
BlsI GCNGC 5 cut(s) 101, 304, 361, 418, 505
BmcAI AGTACT 1 cut(s) 124
Bme1390I CCNGG 1 cut(s) 19
BmgT120I GGNCC 2 cut(s) 445, 446
BmiI GGNNCC 4 cut(s) 7, 446, 447, 448
BmrFI CCNGG 1 cut(s) 19
BmsI GCATC 2 cut(s) 235, 257
BpiI GAAGAC 1 cut(s) 55
Bpu1102I GCTNAGC 1 cut(s) 180
BpuEI CTTGAG 1 cut(s) 533
BpuMI CCSGG 1 cut(s) 19
BsaWI WCCGGW 1 cut(s) 8
Bse118I RCCGGY 1 cut(s) 8
Bse1I ACTGG 1 cut(s) 28
Bse3DI GCAATG 3 cut(s) 102, 114, 411
BseGI GGATG 1 cut(s) 484
BseMI GCAATG 3 cut(s) 102, 114, 411
BseMII CTCAG 2 cut(s) 92, 194
BseNI ACTGG 1 cut(s) 28
BseRI GAGGAG 1 cut(s) 109
BseSI GKGCMC 1 cut(s) 449
BseXI GCAGC 5 cut(s) 111, 314, 346, 428, 490
BseYI CCCAGC 1 cut(s) 380
BsgI GTGCAG 1 cut(s) 180
Bsh1236I CGCG 1 cut(s) 89
BshFI GGCC 1 cut(s) 447
BshTI ACCGGT 1 cut(s) 8
BsiSI CCGG 2 cut(s) 9, 18
BslFI GGGAC 1 cut(s) 363
BsmFI GGGAC 1 cut(s) 363
BsmI GAATGC 1 cut(s) 376
BsnI GGCC 1 cut(s) 447
Bsp120I GGGCCC 1 cut(s) 445
Bsp1286I GDGCHC 1 cut(s) 449
Bsp143I GATC 1 cut(s) 147
Bsp1720I GCTNAGC 1 cut(s) 180
BspACI CCGC 2 cut(s) 89, 501
BspANI GGCC 1 cut(s) 447
BspCNI CTCAG 2 cut(s) 91, 193
BspFNI CGCG 1 cut(s) 89
BspLI GGNNCC 4 cut(s) 7, 446, 447, 448
BspMAI CTGCAG 1 cut(s) 130
BsrDI GCAATG 3 cut(s) 102, 114, 411
BsrFI RCCGGY 1 cut(s) 8
BsrI ACTGG 1 cut(s) 28
BssAI RCCGGY 1 cut(s) 8
BssMI GATC 1 cut(s) 147
Bst4CI ACNGT 3 cut(s) 269, 388, 460
Bst6I CTCTTC 1 cut(s) 417
BstC8I GCNNGC 1 cut(s) 211
BstDEI CTNAG 2 cut(s) 78, 180
BstF5I GGATG 1 cut(s) 484
BstFNI CGCG 1 cut(s) 89
BstHHI GCGC 1 cut(s) 215
BstKTI GATC 1 cut(s) 150
BstMBI GATC 1 cut(s) 147
BstMWI GCNNNNNNNGC 4 cut(s) 291, 416, 512, 521
BstNSI RCATGY 1 cut(s) 213
BstSCI CCNGG 1 cut(s) 17
BstSFI CTRYAG 1 cut(s) 126
BstSLI GKGCMC 1 cut(s) 449
BstUI CGCG 1 cut(s) 89
BstV1I GCAGC 5 cut(s) 111, 314, 346, 428, 490
BstV2I GAAGAC 1 cut(s) 55
BsuRI GGCC 1 cut(s) 447
BtsCI GGATG 1 cut(s) 484
BtsI GCAGTG 1 cut(s) 280
BtsIMutI CAGTG 1 cut(s) 280
Cac8I GCNNGC 1 cut(s) 211
CfoI GCGC 1 cut(s) 215
Cfr10I RCCGGY 1 cut(s) 8
Cfr13I GGNCC 2 cut(s) 445, 446
Csp6I GTAC 2 cut(s) 123, 545
CspAI ACCGGT 1 cut(s) 8
CviAII CATG 2 cut(s) 210, 453
CviJI RGCY 8 cut(s) 27, 179, 184, 305, 359, 447, 515, 524
CviKI_1 RGCY 8 cut(s) 27, 179, 184, 305, 359, 447, 515, 524
CviQI GTAC 2 cut(s) 123, 545
DdeI CTNAG 2 cut(s) 78, 180
DpnI GATC 1 cut(s) 149
DpnII GATC 1 cut(s) 147
Eam1104I CTCTTC 1 cut(s) 417
EarI CTCTTC 1 cut(s) 417
Eco24I GRGCYC 1 cut(s) 449
EcoO109I RGGNCCY 2 cut(s) 445, 446
EcoT22I ATGCAT 1 cut(s) 250
EcoT38I GRGCYC 1 cut(s) 449
FaeI CATG 2 cut(s) 213, 456
FaiI YATR 5 cut(s) 24, 171, 211, 219, 454
FaqI GGGAC 1 cut(s) 363
FatI CATG 2 cut(s) 209, 452
Fnu4HI GCNGC 5 cut(s) 100, 303, 360, 417, 504
FokI GGATG 1 cut(s) 491
FriOI GRGCYC 1 cut(s) 449
Fsp4HI GCNGC 5 cut(s) 100, 303, 360, 417, 504
FspBI CTAG 3 cut(s) 120, 231, 467
GlaI GCGC 1 cut(s) 214
GluI GCNGC 5 cut(s) 100, 303, 360, 417, 504
GsaI CCCAGC 1 cut(s) 384
HaeIII GGCC 1 cut(s) 447
HapII CCGG 2 cut(s) 9, 18
HhaI GCGC 1 cut(s) 215
Hin1II CATG 2 cut(s) 213, 456
Hin6I GCGC 1 cut(s) 213
HinP1I GCGC 1 cut(s) 213
HinfI GANTC 1 cut(s) 425
HpaII CCGG 2 cut(s) 9, 18
HphI GGTGA 1 cut(s) 185
Hpy166II GTNNAC 1 cut(s) 346
Hpy188I TCNGA 1 cut(s) 312
Hpy8I GTNNAC 1 cut(s) 346
HpyAV CCTTC 2 cut(s) 468, 527
HpyCH4III ACNGT 3 cut(s) 269, 388, 460
HpyCH4V TGCA 7 cut(s) 107, 128, 140, 161, 248, 362, 416
HpyF10VI GCNNNNNNNGC 4 cut(s) 291, 416, 512, 521
HpyF3I CTNAG 2 cut(s) 78, 180
Hsp92II CATG 2 cut(s) 213, 456
HspAI GCGC 1 cut(s) 213
Kzo9I GATC 1 cut(s) 147
LmnI GCTCC 2 cut(s) 96, 529
LpnPI CCDG 7 cut(s) 22, 31, 41, 147, 394, 426, 534
Lsp1109I GCAGC 5 cut(s) 111, 314, 346, 428, 490
LweI GCATC 2 cut(s) 235, 257
MaeI CTAG 3 cut(s) 120, 231, 467
MaeIII GTNAC 1 cut(s) 226
MalI GATC 1 cut(s) 149
MboI GATC 1 cut(s) 147
MboII GAAGA 3 cut(s) 55, 434, 483
MhlI GDGCHC 1 cut(s) 449
MluCI AATT 2 cut(s) 252, 319
MlyI GAGTC 1 cut(s) 434
MnlI CCTC 5 cut(s) 87, 158, 169, 323, 460
Mph1103I ATGCAT 1 cut(s) 250
MroXI GAANNNNTTC 1 cut(s) 516
MseI TTAA 1 cut(s) 354
MslI CAYNNNNRTG 1 cut(s) 107
MspA1I CMGCKG 2 cut(s) 184, 503
MspI CCGG 2 cut(s) 9, 18
MspR9I CCNGG 1 cut(s) 19
Mva1269I GAATGC 1 cut(s) 376
MvnI CGCG 1 cut(s) 89
MwoI GCNNNNNNNGC 4 cut(s) 291, 416, 512, 521
NciI CCSGG 1 cut(s) 19
NdeII GATC 1 cut(s) 147
NlaIII CATG 2 cut(s) 213, 456
NlaIV GGNNCC 4 cut(s) 7, 446, 447, 448
NmuCI GTSAC 1 cut(s) 226
NsiI ATGCAT 1 cut(s) 250
NspI RCATGY 1 cut(s) 213
PaeI GCATGC 1 cut(s) 213
PctI GAATGC 1 cut(s) 376
PdmI GAANNNNTTC 1 cut(s) 516
PinAI ACCGGT 1 cut(s) 8
PkrI GCNGC 5 cut(s) 101, 304, 361, 418, 505
PleI GAGTC 1 cut(s) 433
PpsI GAGTC 1 cut(s) 433
PspFI CCCAGC 1 cut(s) 380
PspN4I GGNNCC 4 cut(s) 7, 446, 447, 448
PspOMI GGGCCC 1 cut(s) 445
PspPI GGNCC 2 cut(s) 445, 446
PsrI GAACNNNNNNTAC 1 cut(s) 30
PstI CTGCAG 1 cut(s) 130
PvuII CAGCTG 1 cut(s) 184
RsaI GTAC 2 cut(s) 124, 546
RsaNI GTAC 2 cut(s) 123, 545
RseI CAYNNNNRTG 1 cut(s) 107
SaqAI TTAA 1 cut(s) 354
SatI GCNGC 5 cut(s) 100, 303, 360, 417, 504
Sau3AI GATC 1 cut(s) 147
Sau96I GGNCC 2 cut(s) 445, 446
ScaI AGTACT 1 cut(s) 124
SchI GAGTC 1 cut(s) 434
ScrFI CCNGG 1 cut(s) 19
SduI GDGCHC 1 cut(s) 449
SetI ASST 3 cut(s) 186, 526, 540
SfaNI GCATC 2 cut(s) 235, 257
SfcI CTRYAG 1 cut(s) 126
SmiMI CAYNNNNRTG 1 cut(s) 107
SmlI CTYRAG 1 cut(s) 548
SmoI CTYRAG 1 cut(s) 548
SpeI ACTAGT 1 cut(s) 119
SphI GCATGC 1 cut(s) 213
Sse9I AATT 2 cut(s) 252, 319
SsiI CCGC 2 cut(s) 89, 501
SspMI CTAG 3 cut(s) 120, 231, 467
StyD4I CCNGG 1 cut(s) 17
TaaI ACNGT 3 cut(s) 269, 388, 460
TaqI TCGA 1 cut(s) 279
TasI AATT 2 cut(s) 252, 319
TatI WGTACW 2 cut(s) 122, 544
Tru1I TTAA 1 cut(s) 354
Tru9I TTAA 1 cut(s) 354
TscAI CASTG 1 cut(s) 280
TseFI GTSAC 1 cut(s) 226
TseI GCWGC 5 cut(s) 99, 302, 359, 416, 503
Tsp45I GTSAC 1 cut(s) 226
TspDTI ATGAA 2 cut(s) 219, 525
TspRI CASTG 1 cut(s) 280
XceI RCATGY 1 cut(s) 213
XmnI GAANNNNTTC 1 cut(s) 516
XspI CTAG 3 cut(s) 120, 231, 467
ZrmI AGTACT 1 cut(s) 124
Zsp2I ATGCAT 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.