Rh5CG571700

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0002716
Physical Location & Seq
Forward (+)
80907156 .. 80909490
2335 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG571700.1

Sequence Viewer

Length: 642 bp
ATGCCTTCTTCTCTATATCACTGTGCAATGGCAACTACTAGTTTTGCAGTTTTCTTTGCATTGTTGATCTTATTGTGTGCAGGAGGATATGGTGAGGCTCAGCTGACCCCGACGTTCTACAATGAAGCATGCCCCGATGTGAATGTCACTAGCATTGTCCGTGGAGTCATTCAGGAAGCTTTGCAGACGGATCCACGTATCGCTGCAAGCCTCATTAGGCTTCACTTCCATGATTGCTTTGTCAATGGTTGTGATGCATCAATTTTGCTGGACAACAGTAGCAGTGTCGATGGAATAGACAGCGAGAAAGCAGCCTTTCCGAATGTTAATTCAGCGAGAGGATTTGATGTTGTGGACAAGATTAAGACTGCATTGGAGAATGCTTGTCCCAGCACGGTTTCTTGTGCTGATATTCTTGCCATTGCAGCAGAAGAGTCTGTTTCTTTGTCTGGAGGCCCCTCATGGACAGTCCTACTAGGAAGAAAGGATGGAACAACAGCAAACCGAACCGCTGCTAATGAAGCCCTTCCAGCTCCCACTTCAAACCTTGATGTACTCAAGTCCAAGTTCTCAGCTGTAGGCCTAAACACCACCGATCTGGTTGTACTCAAATATAAATGTTACATAGTACGTTTTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004601 GO:0005488 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009505 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009636 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009826 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016209 GO:0016491 GO:0016684 GO:0020037 GO:0030312 GO:0031090 GO:0031347 GO:0031349 GO:0032502 GO:0032989 GO:0035821 GO:0040007 GO:0040008 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0045926 GO:0046906 GO:0048037 GO:0048046 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0048589 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0055114 GO:0060560 GO:0065007 GO:0070887 GO:0071840 GO:0071944 GO:0072593 GO:0075136 GO:0080134 GO:0097159 GO:0097237 GO:0098542 GO:0098588 GO:0098754 GO:0098805 GO:0098869 GO:1901363 GO:1990748
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

213

Amino Acids

22.57

Weight (kDa)

4.97

Isoelectric Point (pI)

32.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 53 - 203 1e-53 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 510
AclWI GGATC 2 cut(s) 185, 198
AfaI GTAC 3 cut(s) 555, 606, 630
AgsI TTSAA 1 cut(s) 543
AhlI ACTAGT 1 cut(s) 38
AluBI AGCT 4 cut(s) 103, 179, 533, 575
AluI AGCT 4 cut(s) 103, 179, 533, 575
AlwI GGATC 2 cut(s) 185, 198
AoxI GGCC 2 cut(s) 454, 580
ApeKI GCWGC 4 cut(s) 203, 311, 425, 512
Asp700I GAANNNNTTC 1 cut(s) 525
AspS9I GGNCC 1 cut(s) 455
AsuHPI GGTGA 1 cut(s) 104
BamHI GGATCC 1 cut(s) 190
BbvI GCAGC 4 cut(s) 190, 323, 437, 499
BccI CCATC 2 cut(s) 284, 482
BcuI ACTAGT 1 cut(s) 38
BfaI CTAG 3 cut(s) 39, 150, 476
BfmI CTRYAG 1 cut(s) 576
BisI GCNGC 4 cut(s) 204, 312, 426, 513
BlpI GCTNAGC 1 cut(s) 99
BlsI GCNGC 4 cut(s) 205, 313, 427, 514
BmgT120I GGNCC 1 cut(s) 455
BmiI GGNNCC 2 cut(s) 192, 457
BmsI GCATC 2 cut(s) 244, 266
BpmI CTGGAG 1 cut(s) 471
Bpu1102I GCTNAGC 1 cut(s) 99
BpuEI CTTGAG 1 cut(s) 542
BsaAI YACGTR 1 cut(s) 197
BsaJI CCNNGG 1 cut(s) 160
Bse3DI GCAATG 2 cut(s) 33, 420
BseDI CCNNGG 1 cut(s) 160
BseGI GGATG 1 cut(s) 493
BseMI GCAATG 2 cut(s) 33, 420
BseMII CTCAG 2 cut(s) 113, 585
BseXI GCAGC 4 cut(s) 190, 323, 437, 499
BseYI CCCAGC 1 cut(s) 389
BsgI GTGCAG 1 cut(s) 99
BshFI GGCC 2 cut(s) 456, 582
BslFI GGGAC 1 cut(s) 372
BsmFI GGGAC 1 cut(s) 372
BsmI GAATGC 1 cut(s) 385
BsnI GGCC 2 cut(s) 456, 582
Bsp143I GATC 3 cut(s) 66, 190, 595
Bsp1720I GCTNAGC 1 cut(s) 99
BspACI CCGC 1 cut(s) 510
BspANI GGCC 2 cut(s) 456, 582
BspCNI CTCAG 2 cut(s) 112, 584
BspLI GGNNCC 2 cut(s) 192, 457
BspPI GGATC 2 cut(s) 185, 198
BsrDI GCAATG 2 cut(s) 33, 420
BssECI CCNNGG 1 cut(s) 160
BssMI GATC 3 cut(s) 66, 190, 595
Bst4CI ACNGT 4 cut(s) 23, 278, 397, 469
Bst6I CTCTTC 1 cut(s) 426
BstBAI YACGTR 1 cut(s) 197
BstC8I GCNNGC 2 cut(s) 130, 208
BstDEI CTNAG 2 cut(s) 99, 571
BstDSI CCRYGG 1 cut(s) 160
BstF5I GGATG 1 cut(s) 493
BstKTI GATC 3 cut(s) 69, 193, 598
BstMBI GATC 3 cut(s) 66, 190, 595
BstMWI GCNNNNNNNGC 3 cut(s) 425, 521, 530
BstNSI RCATGY 1 cut(s) 132
BstSFI CTRYAG 1 cut(s) 576
BstV1I GCAGC 4 cut(s) 190, 323, 437, 499
BstX2I RGATCY 1 cut(s) 190
BstXI CCANNNNNNTGG 1 cut(s) 598
BstYI RGATCY 1 cut(s) 190
BsuRI GGCC 2 cut(s) 456, 582
BtgI CCRYGG 1 cut(s) 160
BtsCI GGATG 1 cut(s) 493
BtsI GCAGTG 1 cut(s) 289
BtsIMutI CAGTG 2 cut(s) 19, 289
Cac8I GCNNGC 2 cut(s) 130, 208
Cfr13I GGNCC 1 cut(s) 455
Csp6I GTAC 3 cut(s) 554, 605, 629
CviAII CATG 3 cut(s) 129, 230, 462
CviQI GTAC 3 cut(s) 554, 605, 629
DdeI CTNAG 2 cut(s) 99, 571
DpnI GATC 3 cut(s) 68, 192, 597
DpnII GATC 3 cut(s) 66, 190, 595
Eam1104I CTCTTC 1 cut(s) 426
EarI CTCTTC 1 cut(s) 426
Eco147I AGGCCT 1 cut(s) 582
EcoO109I RGGNCCY 1 cut(s) 455
EcoT22I ATGCAT 1 cut(s) 259
FaeI CATG 3 cut(s) 132, 233, 465
FaiI YATR 7 cut(s) 16, 90, 130, 231, 463, 615, 626
FaqI GGGAC 1 cut(s) 372
FatI CATG 3 cut(s) 128, 229, 461
Fnu4HI GCNGC 4 cut(s) 204, 312, 426, 513
FokI GGATG 1 cut(s) 500
Fsp4HI GCNGC 4 cut(s) 204, 312, 426, 513
FspBI CTAG 3 cut(s) 39, 150, 476
GluI GCNGC 4 cut(s) 204, 312, 426, 513
GsaI CCCAGC 1 cut(s) 393
GsuI CTGGAG 1 cut(s) 471
HaeIII GGCC 2 cut(s) 456, 582
Hin1II CATG 3 cut(s) 132, 233, 465
HindIII AAGCTT 1 cut(s) 177
HinfI GANTC 2 cut(s) 165, 434
HphI GGTGA 1 cut(s) 104
Hpy166II GTNNAC 1 cut(s) 355
Hpy188I TCNGA 1 cut(s) 321
Hpy188III TCNNGA 2 cut(s) 173, 450
Hpy8I GTNNAC 1 cut(s) 355
Hpy99I CGWCG 1 cut(s) 115
HpyAV CCTTC 2 cut(s) 15, 536
HpyCH4III ACNGT 4 cut(s) 23, 278, 397, 469
HpyCH4IV ACGT 3 cut(s) 113, 196, 631
HpyCH4V TGCA 9 cut(s) 26, 47, 59, 80, 184, 206, 257, 371, 425
HpyF10VI GCNNNNNNNGC 3 cut(s) 425, 521, 530
HpyF3I CTNAG 2 cut(s) 99, 571
HpySE526I ACGT 3 cut(s) 113, 196, 631
Hsp92II CATG 3 cut(s) 132, 233, 465
Kzo9I GATC 3 cut(s) 66, 190, 595
LmnI GCTCC 1 cut(s) 538
LpnPI CCDG 7 cut(s) 66, 158, 254, 403, 435, 543, 584
Lsp1109I GCAGC 4 cut(s) 190, 323, 437, 499
LweI GCATC 2 cut(s) 244, 266
MaeI CTAG 3 cut(s) 39, 150, 476
MaeII ACGT 3 cut(s) 113, 196, 631
MaeIII GTNAC 2 cut(s) 145, 620
MalI GATC 3 cut(s) 68, 192, 597
MboI GATC 3 cut(s) 66, 190, 595
MboII GAAGA 2 cut(s) 443, 492
MflI RGATCY 1 cut(s) 190
MluCI AATT 2 cut(s) 261, 328
MlyI GAGTC 2 cut(s) 174, 443
MnlI CCTC 6 cut(s) 77, 88, 221, 332, 446, 469
Mph1103I ATGCAT 1 cut(s) 259
MroXI GAANNNNTTC 1 cut(s) 525
MseI TTAA 2 cut(s) 327, 363
MslI CAYNNNNRTG 1 cut(s) 228
MspA1I CMGCKG 3 cut(s) 103, 512, 575
Mva1269I GAATGC 1 cut(s) 385
MwoI GCNNNNNNNGC 3 cut(s) 425, 521, 530
NdeII GATC 3 cut(s) 66, 190, 595
NlaIII CATG 3 cut(s) 132, 233, 465
NlaIV GGNNCC 2 cut(s) 192, 457
NmuCI GTSAC 1 cut(s) 145
NsiI ATGCAT 1 cut(s) 259
NspI RCATGY 1 cut(s) 132
PaeI GCATGC 1 cut(s) 132
PceI AGGCCT 1 cut(s) 582
PctI GAATGC 1 cut(s) 385
PdmI GAANNNNTTC 1 cut(s) 525
PkrI GCNGC 4 cut(s) 205, 313, 427, 514
PleI GAGTC 2 cut(s) 173, 442
PpsI GAGTC 2 cut(s) 173, 442
Ppu21I YACGTR 1 cut(s) 197
PspFI CCCAGC 1 cut(s) 389
PspN4I GGNNCC 2 cut(s) 192, 457
PspPI GGNCC 1 cut(s) 455
PsuI RGATCY 1 cut(s) 190
PvuII CAGCTG 2 cut(s) 103, 575
RsaI GTAC 3 cut(s) 555, 606, 630
RsaNI GTAC 3 cut(s) 554, 605, 629
RseI CAYNNNNRTG 1 cut(s) 228
SaqAI TTAA 2 cut(s) 327, 363
SatI GCNGC 4 cut(s) 204, 312, 426, 513
Sau3AI GATC 3 cut(s) 66, 190, 595
Sau96I GGNCC 1 cut(s) 455
SchI GAGTC 2 cut(s) 174, 443
SetI ASST 8 cut(s) 105, 116, 181, 199, 535, 549, 577, 634
SfaNI GCATC 2 cut(s) 244, 266
SfcI CTRYAG 1 cut(s) 576
SmiMI CAYNNNNRTG 1 cut(s) 228
SmlI CTYRAG 1 cut(s) 557
SmoI CTYRAG 1 cut(s) 557
SpeI ACTAGT 1 cut(s) 38
SphI GCATGC 1 cut(s) 132
Sse9I AATT 2 cut(s) 261, 328
SseBI AGGCCT 1 cut(s) 582
SsiI CCGC 1 cut(s) 510
SspMI CTAG 3 cut(s) 39, 150, 476
StuI AGGCCT 1 cut(s) 582
TaaI ACNGT 4 cut(s) 23, 278, 397, 469
TaiI ACGT 3 cut(s) 116, 199, 634
TaqI TCGA 1 cut(s) 288
TasI AATT 2 cut(s) 261, 328
TatI WGTACW 2 cut(s) 553, 604
Tru1I TTAA 2 cut(s) 327, 363
Tru9I TTAA 2 cut(s) 327, 363
TscAI CASTG 2 cut(s) 26, 289
TseFI GTSAC 1 cut(s) 145
TseI GCWGC 4 cut(s) 203, 311, 425, 512
Tsp45I GTSAC 1 cut(s) 145
TspDTI ATGAA 2 cut(s) 138, 534
TspGWI ACGGA 2 cut(s) 149, 203
TspRI CASTG 2 cut(s) 26, 289
XceI RCATGY 1 cut(s) 132
XmnI GAANNNNTTC 1 cut(s) 525
XspI CTAG 3 cut(s) 39, 150, 476
Zsp2I ATGCAT 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.