Rw5G048790

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0002716
Physical Location & Seq
Forward (+)
84775796 .. 84778597
2802 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G048790.1

Sequence Viewer

Length: 1047 bp
ATGGCAACTACTAGTTTTGCAGTTTTCTTTGCATTGTTGATCTTATTGTGTGCAGGAGGATATGGTGAGGCTCAGCTGACCCCGACGTTCTACAATGAAGCATGCCCCGATGTGAATGTCACTAGCATTGTCCGTGGAGTCATTCAGGAAGCTTTGCAGACGGATCCACGTATCGCTGCAAGCCTCATTAGGCTTCACTTCCATGATTGCTTTGTCAATGGTTGTGATGCATCAATTTTGCTGGACAACAGTAGCAGTGTCGATGGAATAGACAACGAGAAAGCAGCCTTTCCGAATGTTAATTCAGCGAGAGGATTTGATGTTGTGGACAAGATTAAGACTGCATTGGAGAATGCTTGTCCCAGCACGGTTTCTTGTGCTGATATTCTTGCCATTGCAGCAGAAGAGTCTGTTTCTTTGTCTGGAGGCCCCTCATGGACAGTCCTACTAGGAAGAAGGGATGGAACAACAGCAAACCGAACCGCTGCTAATGAAGCCCTTCCAGCTCCCACTTCAAACCTTGATGTACTCAAGTCCAAGTTCTCAGCTGTAGGCCTAAACACCACCGATCTGGTTGTACTCAAATATAAATGTGCTCACACATTTGGACGCGCCCAGTGTCAGTTTTTCACTGATCGATTATACAACTTCAACAACACAGGGAGTCCTGACCAAACCTTAAACTCGACCTACATAGAAACCTTGAGTGACATATGCCCACAAAATGGGAATGGGAGTGTCCTGGCCAATTTTGATCCCTCAACACCTGATGGTTTCGACAGCAACTATTTCTCTAATCTTCAAGTTCATAAGGGTCTACTCCAAAGCGACCAAGAGCTGTTTTCGACTAGTGGGGCTGATACCATTGATATAGTTAACAACTTCAGCGTTAATCAGACCACATTCTTTGAGAGCTTTGTGGAATCGATGATTAAAATGGGGAATATAAGCCTCTTGACAGGAACTGATGGAGAGATTCGATTGAACTGCAGTAGGGTTAACGAAGATTCATTTGGATCATCTGCTGCTTTGCTAGCTGAGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004601 GO:0005488 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009505 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009636 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009826 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016209 GO:0016491 GO:0016684 GO:0020037 GO:0030312 GO:0031090 GO:0031347 GO:0031349 GO:0032502 GO:0032989 GO:0035821 GO:0040007 GO:0040008 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0045926 GO:0046906 GO:0048037 GO:0048046 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0048589 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0055114 GO:0060560 GO:0065007 GO:0070887 GO:0071840 GO:0071944 GO:0072593 GO:0075136 GO:0080134 GO:0097159 GO:0097237 GO:0098542 GO:0098588 GO:0098754 GO:0098805 GO:0098869 GO:1901363 GO:1990748
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

348

Amino Acids

37.3

Weight (kDa)

4.42

Isoelectric Point (pI)

30.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 44 - 296 5.5e-81 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 725
AccI GTMKAC 1 cut(s) 817
AccII CGCG 1 cut(s) 612
AciI CCGC 1 cut(s) 483
AclWI GGATC 4 cut(s) 158, 171, 749, 1024
AcoI YGGCCR 1 cut(s) 744
AcuI CTGAAG 1 cut(s) 868
AfaI GTAC 3 cut(s) 528, 579, 1043
AfiI CCNNNNNNNGG 1 cut(s) 725
AgsI TTSAA 4 cut(s) 516, 652, 803, 985
AhlI ACTAGT 2 cut(s) 11, 848
AjnI CCWGG 1 cut(s) 741
AjuI GAANNNNNNNTTGG 2 cut(s) 996, 1028
AluBI AGCT 7 cut(s) 76, 152, 506, 548, 838, 915, 1037
AluI AGCT 7 cut(s) 76, 152, 506, 548, 838, 915, 1037
Alw21I GWGCWC 1 cut(s) 598
AlwI GGATC 4 cut(s) 158, 171, 749, 1024
AlwNI CAGNNNCTG 1 cut(s) 965
AoxI GGCC 3 cut(s) 427, 553, 744
ApeKI GCWGC 5 cut(s) 176, 284, 398, 485, 1025
Asp700I GAANNNNTTC 1 cut(s) 498
AspLEI GCGC 1 cut(s) 614
AspS9I GGNCC 1 cut(s) 428
AsuHPI GGTGA 1 cut(s) 77
AsuNHI GCTAGC 1 cut(s) 1033
BalI TGGCCA 1 cut(s) 746
BamHI GGATCC 1 cut(s) 163
Bbv12I GWGCWC 1 cut(s) 598
BbvI GCAGC 5 cut(s) 163, 296, 410, 472, 1012
BccI CCATC 4 cut(s) 257, 455, 764, 962
BcgI CGANNNNNNTGC 2 cut(s) 969, 1003
BciT130I CCWGG 1 cut(s) 743
BcuI ACTAGT 2 cut(s) 11, 848
BfaI CTAG 5 cut(s) 12, 123, 449, 849, 1034
BfmI CTRYAG 2 cut(s) 549, 988
BisI GCNGC 5 cut(s) 177, 285, 399, 486, 1026
BlpI GCTNAGC 1 cut(s) 72
BlsI GCNGC 5 cut(s) 178, 286, 400, 487, 1027
BmcAI AGTACT 1 cut(s) 1043
Bme1390I CCNGG 1 cut(s) 743
BmgT120I GGNCC 1 cut(s) 428
BmiI GGNNCC 2 cut(s) 165, 430
BmrFI CCNGG 1 cut(s) 743
BmrI ACTGGG 1 cut(s) 610
BmsI GCATC 2 cut(s) 217, 239
BmtI GCTAGC 1 cut(s) 1037
BmuI ACTGGG 1 cut(s) 610
BpmI CTGGAG 1 cut(s) 444
Bpu1102I GCTNAGC 1 cut(s) 72
BpuEI CTTGAG 2 cut(s) 515, 724
Bsa29I ATCGAT 2 cut(s) 637, 926
BsaAI YACGTR 1 cut(s) 170
BsaJI CCNNGG 1 cut(s) 133
Bsc4I CCNNNNNNNGG 1 cut(s) 725
Bse1I ACTGG 1 cut(s) 616
Bse3DI GCAATG 1 cut(s) 393
BseBI CCWGG 1 cut(s) 743
BseCI ATCGAT 2 cut(s) 637, 926
BseDI CCNNGG 1 cut(s) 133
BseGI GGATG 1 cut(s) 466
BseLI CCNNNNNNNGG 1 cut(s) 725
BseMI GCAATG 1 cut(s) 393
BseMII CTCAG 3 cut(s) 86, 558, 1029
BseNI ACTGG 1 cut(s) 616
BseXI GCAGC 5 cut(s) 163, 296, 410, 472, 1012
BseYI CCCAGC 1 cut(s) 362
BsgI GTGCAG 1 cut(s) 72
Bsh1236I CGCG 1 cut(s) 612
BshFI GGCC 3 cut(s) 429, 555, 746
BshVI ATCGAT 2 cut(s) 637, 926
BsiHKAI GWGCWC 1 cut(s) 598
BslFI GGGAC 1 cut(s) 345
BslI CCNNNNNNNGG 1 cut(s) 725
BsmFI GGGAC 1 cut(s) 345
BsmI GAATGC 1 cut(s) 358
BsnI GGCC 3 cut(s) 429, 555, 746
Bsp1286I GDGCHC 1 cut(s) 598
Bsp143I GATC 6 cut(s) 39, 163, 568, 634, 754, 1016
Bsp1720I GCTNAGC 1 cut(s) 72
BspACI CCGC 1 cut(s) 483
BspANI GGCC 3 cut(s) 429, 555, 746
BspCNI CTCAG 3 cut(s) 85, 557, 1030
BspDI ATCGAT 2 cut(s) 637, 926
BspFNI CGCG 1 cut(s) 612
BspLI GGNNCC 2 cut(s) 165, 430
BspMAI CTGCAG 1 cut(s) 992
BspOI GCTAGC 1 cut(s) 1037
BspPI GGATC 4 cut(s) 158, 171, 749, 1024
BsrDI GCAATG 1 cut(s) 393
BsrI ACTGG 1 cut(s) 616
BssECI CCNNGG 1 cut(s) 133
BssMI GATC 6 cut(s) 39, 163, 568, 634, 754, 1016
Bst2UI CCWGG 1 cut(s) 743
Bst4CI ACNGT 3 cut(s) 251, 370, 442
Bst6I CTCTTC 1 cut(s) 399
BstBAI YACGTR 1 cut(s) 170
BstC8I GCNNGC 3 cut(s) 103, 181, 1035
BstDEI CTNAG 3 cut(s) 72, 544, 1038
BstDSI CCRYGG 1 cut(s) 133
BstF5I GGATG 1 cut(s) 466
BstFNI CGCG 1 cut(s) 612
BstHHI GCGC 1 cut(s) 614
BstKTI GATC 6 cut(s) 42, 166, 571, 637, 757, 1019
BstMBI GATC 6 cut(s) 39, 163, 568, 634, 754, 1016
BstMWI GCNNNNNNNGC 4 cut(s) 398, 494, 503, 1034
BstNI CCWGG 1 cut(s) 743
BstNSI RCATGY 1 cut(s) 105
BstSCI CCNGG 1 cut(s) 741
BstSFI CTRYAG 2 cut(s) 549, 988
BstUI CGCG 1 cut(s) 612
BstV1I GCAGC 5 cut(s) 163, 296, 410, 472, 1012
BstX2I RGATCY 1 cut(s) 163
BstXI CCANNNNNNTGG 1 cut(s) 571
BstYI RGATCY 1 cut(s) 163
Bsu15I ATCGAT 2 cut(s) 637, 926
BsuRI GGCC 3 cut(s) 429, 555, 746
BsuTUI ATCGAT 2 cut(s) 637, 926
BtgI CCRYGG 1 cut(s) 133
BtsCI GGATG 1 cut(s) 466
BtsI GCAGTG 1 cut(s) 262
BtsIMutI CAGTG 3 cut(s) 262, 623, 630
Cac8I GCNNGC 3 cut(s) 103, 181, 1035
CaiI CAGNNNCTG 1 cut(s) 965
CfoI GCGC 1 cut(s) 614
Cfr13I GGNCC 1 cut(s) 428
ClaI ATCGAT 2 cut(s) 637, 926
CseI GACGC 1 cut(s) 618
Csp6I GTAC 3 cut(s) 527, 578, 1042
CspCI CAANNNNNGTGG 2 cut(s) 889, 924
CviAII CATG 3 cut(s) 102, 203, 435
CviQI GTAC 3 cut(s) 527, 578, 1042
DdeI CTNAG 3 cut(s) 72, 544, 1038
DpnI GATC 6 cut(s) 41, 165, 570, 636, 756, 1018
DpnII GATC 6 cut(s) 39, 163, 568, 634, 754, 1016
EaeI YGGCCR 1 cut(s) 744
Eam1104I CTCTTC 1 cut(s) 399
EarI CTCTTC 1 cut(s) 399
Eco147I AGGCCT 1 cut(s) 555
Eco57I CTGAAG 1 cut(s) 868
EcoO109I RGGNCCY 1 cut(s) 428
EcoRII CCWGG 1 cut(s) 741
EcoT22I ATGCAT 1 cut(s) 232
FaeI CATG 3 cut(s) 105, 206, 438
FaqI GGGAC 1 cut(s) 345
FatI CATG 3 cut(s) 101, 202, 434
FauNDI CATATG 1 cut(s) 713
FblI GTMKAC 1 cut(s) 817
Fnu4HI GCNGC 5 cut(s) 177, 285, 399, 486, 1026
FokI GGATG 1 cut(s) 473
Fsp4HI GCNGC 5 cut(s) 177, 285, 399, 486, 1026
FspBI CTAG 5 cut(s) 12, 123, 449, 849, 1034
GlaI GCGC 1 cut(s) 613
GluI GCNGC 5 cut(s) 177, 285, 399, 486, 1026
GsaI CCCAGC 1 cut(s) 366
GsuI CTGGAG 1 cut(s) 444
HaeIII GGCC 3 cut(s) 429, 555, 746
HgaI GACGC 1 cut(s) 618
HhaI GCGC 1 cut(s) 614
Hin1II CATG 3 cut(s) 105, 206, 438
Hin6I GCGC 1 cut(s) 612
HinP1I GCGC 1 cut(s) 612
HincII GTYRAC 2 cut(s) 877, 1000
HindII GTYRAC 2 cut(s) 877, 1000
HindIII AAGCTT 1 cut(s) 150
HinfI GANTC 6 cut(s) 138, 407, 664, 923, 976, 1007
HpaI GTTAAC 2 cut(s) 877, 1000
HphI GGTGA 1 cut(s) 77
Hpy166II GTNNAC 4 cut(s) 328, 818, 877, 1000
Hpy188I TCNGA 2 cut(s) 294, 897
Hpy188III TCNNGA 4 cut(s) 146, 423, 668, 955
Hpy8I GTNNAC 4 cut(s) 328, 818, 877, 1000
Hpy99I CGWCG 1 cut(s) 88
HpyAV CCTTC 2 cut(s) 450, 509
HpyCH4III ACNGT 3 cut(s) 251, 370, 442
HpyCH4IV ACGT 2 cut(s) 86, 169
HpyCH4V TGCA 9 cut(s) 20, 32, 53, 157, 179, 230, 344, 398, 990
HpyF10VI GCNNNNNNNGC 4 cut(s) 398, 494, 503, 1034
HpyF3I CTNAG 3 cut(s) 72, 544, 1038
HpySE526I ACGT 2 cut(s) 86, 169
Hsp92II CATG 3 cut(s) 105, 206, 438
HspAI GCGC 1 cut(s) 612
KspAI GTTAAC 2 cut(s) 877, 1000
Kzo9I GATC 6 cut(s) 39, 163, 568, 634, 754, 1016
LmnI GCTCC 1 cut(s) 511
Lsp1109I GCAGC 5 cut(s) 163, 296, 410, 472, 1012
LweI GCATC 2 cut(s) 217, 239
MaeI CTAG 5 cut(s) 12, 123, 449, 849, 1034
MaeII ACGT 2 cut(s) 86, 169
MaeIII GTNAC 2 cut(s) 118, 707
MalI GATC 6 cut(s) 41, 165, 570, 636, 756, 1018
MboI GATC 6 cut(s) 39, 163, 568, 634, 754, 1016
MboII GAAGA 4 cut(s) 416, 465, 791, 1016
MflI RGATCY 1 cut(s) 163
MhlI GDGCHC 1 cut(s) 598
MlsI TGGCCA 1 cut(s) 746
MluCI AATT 3 cut(s) 234, 301, 748
MluNI TGGCCA 1 cut(s) 746
MlyI GAGTC 3 cut(s) 147, 416, 673
MnlI CCTC 8 cut(s) 50, 61, 194, 305, 419, 442, 769, 962
Mox20I TGGCCA 1 cut(s) 746
Mph1103I ATGCAT 1 cut(s) 232
MroXI GAANNNNTTC 1 cut(s) 498
MscI TGGCCA 1 cut(s) 746
MseI TTAA 7 cut(s) 300, 336, 680, 876, 891, 933, 999
MslI CAYNNNNRTG 1 cut(s) 201
Msp20I TGGCCA 1 cut(s) 746
MspA1I CMGCKG 3 cut(s) 76, 485, 548
MspR9I CCNGG 1 cut(s) 743
Mva1269I GAATGC 1 cut(s) 358
MvaI CCWGG 1 cut(s) 743
MvnI CGCG 1 cut(s) 612
MwoI GCNNNNNNNGC 4 cut(s) 398, 494, 503, 1034
NdeI CATATG 1 cut(s) 713
NdeII GATC 6 cut(s) 39, 163, 568, 634, 754, 1016
NheI GCTAGC 1 cut(s) 1033
NlaIII CATG 3 cut(s) 105, 206, 438
NlaIV GGNNCC 2 cut(s) 165, 430
NmuCI GTSAC 2 cut(s) 118, 707
NsiI ATGCAT 1 cut(s) 232
NspI RCATGY 1 cut(s) 105
PaeI GCATGC 1 cut(s) 105
PceI AGGCCT 1 cut(s) 555
PctI GAATGC 1 cut(s) 358
PdmI GAANNNNTTC 1 cut(s) 498
PfeI GAWTC 3 cut(s) 923, 976, 1007
PflMI CCANNNNNTGG 1 cut(s) 725
PkrI GCNGC 5 cut(s) 178, 286, 400, 487, 1027
PleI GAGTC 3 cut(s) 146, 415, 672
PpsI GAGTC 3 cut(s) 146, 415, 672
Ppu21I YACGTR 1 cut(s) 170
Psp6I CCWGG 1 cut(s) 741
PspFI CCCAGC 1 cut(s) 362
PspGI CCWGG 1 cut(s) 741
PspN4I GGNNCC 2 cut(s) 165, 430
PspPI GGNCC 1 cut(s) 428
PstI CTGCAG 1 cut(s) 992
PstNI CAGNNNCTG 1 cut(s) 965
PsuI RGATCY 1 cut(s) 163
PvuII CAGCTG 2 cut(s) 76, 548
RsaI GTAC 3 cut(s) 528, 579, 1043
RsaNI GTAC 3 cut(s) 527, 578, 1042
RseI CAYNNNNRTG 1 cut(s) 201
SaqAI TTAA 7 cut(s) 300, 336, 680, 876, 891, 933, 999
SatI GCNGC 5 cut(s) 177, 285, 399, 486, 1026
Sau3AI GATC 6 cut(s) 39, 163, 568, 634, 754, 1016
Sau96I GGNCC 1 cut(s) 428
ScaI AGTACT 1 cut(s) 1043
SchI GAGTC 3 cut(s) 147, 416, 673
ScrFI CCNGG 1 cut(s) 743
SduI GDGCHC 1 cut(s) 598
SfaNI GCATC 2 cut(s) 217, 239
SfcI CTRYAG 2 cut(s) 549, 988
SmiMI CAYNNNNRTG 1 cut(s) 201
SmlI CTYRAG 2 cut(s) 530, 703
SmoI CTYRAG 2 cut(s) 530, 703
SpeI ACTAGT 2 cut(s) 11, 848
SphI GCATGC 1 cut(s) 105
Sse9I AATT 3 cut(s) 234, 301, 748
SseBI AGGCCT 1 cut(s) 555
SsiI CCGC 1 cut(s) 483
SspMI CTAG 5 cut(s) 12, 123, 449, 849, 1034
StuI AGGCCT 1 cut(s) 555
StyD4I CCNGG 1 cut(s) 741
TaaI ACNGT 3 cut(s) 251, 370, 442
TaiI ACGT 2 cut(s) 89, 172
TaqI TCGA 7 cut(s) 261, 637, 686, 777, 845, 926, 979
TasI AATT 3 cut(s) 234, 301, 748
TatI WGTACW 3 cut(s) 526, 577, 1041
TfiI GAWTC 3 cut(s) 923, 976, 1007
Tru1I TTAA 7 cut(s) 300, 336, 680, 876, 891, 933, 999
Tru9I TTAA 7 cut(s) 300, 336, 680, 876, 891, 933, 999
TscAI CASTG 3 cut(s) 262, 623, 637
TseFI GTSAC 2 cut(s) 118, 707
TseI GCWGC 5 cut(s) 176, 284, 398, 485, 1025
Tsp45I GTSAC 2 cut(s) 118, 707
TspDTI ATGAA 4 cut(s) 111, 507, 797, 999
TspGWI ACGGA 2 cut(s) 122, 176
TspRI CASTG 3 cut(s) 262, 623, 637
Van91I CCANNNNNTGG 1 cut(s) 725
XceI RCATGY 1 cut(s) 105
XmiI GTMKAC 1 cut(s) 817
XmnI GAANNNNTTC 1 cut(s) 498
XspI CTAG 5 cut(s) 12, 123, 449, 849, 1034
ZrmI AGTACT 1 cut(s) 1043
Zsp2I ATGCAT 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.