RchiOBHm_Chr5g0080821

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0002716
Physical Location & Seq
Forward (+)
86788558 .. 86789837
1280 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35510

Sequence Viewer

Length: 924 bp
ATGCCTTCTTCTCTATATCACAGTGCAATGGCAACTAATAGTACTGCAGTTTTTTTTGCATTGTTGATCTTATTGTGTGGAGGAGGCTATGGTGAGGCTCAGCTGACCCCGACGTTCTACAATGAAGCATGCCCCGATGTGAATGTCACTAGCATTGTCCGTGGAGTCCTTCAGGAAGCTTTGCAGACGGATCCACGTATCGCTGCAAGCCTCATTAGGCTTCACTTCCATGATTGCTTTGTCAATGGTTGTGATGCATCAACTTTGCTGGACAACAGTAGCAGTGTCGATGGCATAGACAGCGAGAAAGCAGCCTTTCCGAATGTCAATTCAGCGAGAGGATTTGATGTTGTGGACAAGATTAGGACTGCATTGGAGAATGCTTGTCCCAGCACGGTTTCTTGTGCTGATATTCTTGCCATTGCAGCAGAAGAGTCTGTTTCTTTGTTTATGGTTGCAAACTTGCAATCTGGAGGCCCCTCATGGACAGTCCTACTAGGAAGAAGGGATGGAACAACAGCAAACCGAACCGTTGCTAATGTAGCCCTTCGAGCTCCCACCGCAAACCTTGACGTACACAAGTCCAAGTTCTCAGCTGTAGGCCTAAACACCACCGATCTGGTTGCACTCTCCGGTGCTCACACATTTGGACACGCCGGGTGTCAGCTTTTCACTGATCGATTATACAACTTCAACAACACAGGGAGTCCTGACCAAACCTTAAACTCGACCTACATAGAAACCTTGAGTGACATATGCCCACAAAATGGGAATGTGAGTGTCCTGGGCCCCTGGCCAACTTTGATCCCTCAACACCTGATGGTTTCGACAGCAACTATTTCTGTAATCTTCAATTTCACAAGGGTCTACTCCAAAGCGACCAAGTGCTGTTTTCGACCAGCGGGGCTGATGCCATTGACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004601 GO:0005488 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009505 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009636 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009826 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016209 GO:0016491 GO:0016684 GO:0020037 GO:0030312 GO:0031090 GO:0031347 GO:0031349 GO:0032502 GO:0032989 GO:0035821 GO:0040007 GO:0040008 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0045926 GO:0046906 GO:0048037 GO:0048046 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0048589 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0055114 GO:0060560 GO:0065007 GO:0070887 GO:0071840 GO:0071944 GO:0072593 GO:0075136 GO:0080134 GO:0097159 GO:0097237 GO:0098542 GO:0098588 GO:0098754 GO:0098805 GO:0098869 GO:1901363 GO:1990748
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

307

Amino Acids

32.66

Weight (kDa)

5.58

Isoelectric Point (pI)

35.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 53 - 259 1.8e-62 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 767
AccI GTMKAC 1 cut(s) 867
AciI CCGC 2 cut(s) 561, 902
AclWI GGATC 3 cut(s) 185, 198, 799
AcoI YGGCCR 1 cut(s) 794
AcuI CTGAAG 1 cut(s) 155
AfaI GTAC 2 cut(s) 43, 576
AfiI CCNNNNNNNGG 1 cut(s) 767
AgsI TTSAA 2 cut(s) 694, 853
AjnI CCWGG 2 cut(s) 783, 791
AluBI AGCT 5 cut(s) 103, 179, 554, 596, 667
AluI AGCT 5 cut(s) 103, 179, 554, 596, 667
Alw21I GWGCWC 2 cut(s) 556, 640
AlwI GGATC 3 cut(s) 185, 198, 799
AoxI GGCC 4 cut(s) 475, 601, 787, 794
ApaI GGGCCC 1 cut(s) 791
ApeKI GCWGC 3 cut(s) 203, 311, 425
AspS9I GGNCC 3 cut(s) 476, 787, 788
AsuC2I CCSGG 1 cut(s) 658
AsuHPI GGTGA 1 cut(s) 104
BaeGI GKGCMC 1 cut(s) 791
BalI TGGCCA 1 cut(s) 796
BamHI GGATCC 1 cut(s) 190
BanII GRGCYC 2 cut(s) 556, 791
Bbv12I GWGCWC 2 cut(s) 556, 640
BbvI GCAGC 3 cut(s) 190, 323, 437
BccI CCATC 3 cut(s) 284, 503, 814
BcgI CGANNNNNNTGC 2 cut(s) 605, 639
BciT130I CCWGG 2 cut(s) 785, 793
BcnI CCSGG 1 cut(s) 658
BfaI CTAG 2 cut(s) 150, 497
BfmI CTRYAG 2 cut(s) 45, 597
BisI GCNGC 3 cut(s) 204, 312, 426
BlpI GCTNAGC 1 cut(s) 99
BlsI GCNGC 3 cut(s) 205, 313, 427
BmcAI AGTACT 1 cut(s) 43
Bme1390I CCNGG 3 cut(s) 658, 785, 793
BmgT120I GGNCC 3 cut(s) 476, 787, 788
BmiI GGNNCC 4 cut(s) 192, 478, 789, 790
BmrFI CCNGG 3 cut(s) 658, 785, 793
BmsI GCATC 3 cut(s) 244, 266, 900
BpmI CTGGAG 1 cut(s) 492
Bpu1102I GCTNAGC 1 cut(s) 99
BpuEI CTTGAG 1 cut(s) 766
BpuMI CCSGG 1 cut(s) 658
Bsa29I ATCGAT 1 cut(s) 679
BsaAI YACGTR 1 cut(s) 197
BsaJI CCNNGG 3 cut(s) 160, 784, 791
BsaWI WCCGGW 1 cut(s) 632
Bsc4I CCNNNNNNNGG 1 cut(s) 767
Bse3DI GCAATG 2 cut(s) 33, 420
BseBI CCWGG 2 cut(s) 785, 793
BseCI ATCGAT 1 cut(s) 679
BseDI CCNNGG 3 cut(s) 160, 784, 791
BseGI GGATG 1 cut(s) 514
BseLI CCNNNNNNNGG 1 cut(s) 767
BseMI GCAATG 2 cut(s) 33, 420
BseMII CTCAG 2 cut(s) 113, 606
BseRI GAGGAG 1 cut(s) 96
BseSI GKGCMC 1 cut(s) 791
BseXI GCAGC 3 cut(s) 190, 323, 437
BseYI CCCAGC 1 cut(s) 389
BshFI GGCC 4 cut(s) 477, 603, 789, 796
BshVI ATCGAT 1 cut(s) 679
BsiHKAI GWGCWC 2 cut(s) 556, 640
BsiSI CCGG 2 cut(s) 633, 657
BslFI GGGAC 1 cut(s) 372
BslI CCNNNNNNNGG 1 cut(s) 767
BsmFI GGGAC 1 cut(s) 372
BsmI GAATGC 1 cut(s) 385
BsnI GGCC 4 cut(s) 477, 603, 789, 796
Bsp120I GGGCCC 1 cut(s) 787
Bsp1286I GDGCHC 3 cut(s) 556, 640, 791
Bsp143I GATC 5 cut(s) 66, 190, 616, 676, 804
Bsp1720I GCTNAGC 1 cut(s) 99
BspACI CCGC 2 cut(s) 561, 902
BspANI GGCC 4 cut(s) 477, 603, 789, 796
BspCNI CTCAG 2 cut(s) 112, 605
BspDI ATCGAT 1 cut(s) 679
BspLI GGNNCC 4 cut(s) 192, 478, 789, 790
BspMAI CTGCAG 1 cut(s) 49
BspPI GGATC 3 cut(s) 185, 198, 799
BsrDI GCAATG 2 cut(s) 33, 420
BssECI CCNNGG 3 cut(s) 160, 784, 791
BssMI GATC 5 cut(s) 66, 190, 616, 676, 804
Bst2UI CCWGG 2 cut(s) 785, 793
Bst4CI ACNGT 5 cut(s) 23, 278, 397, 490, 532
Bst6I CTCTTC 1 cut(s) 426
BstBAI YACGTR 1 cut(s) 197
BstC8I GCNNGC 2 cut(s) 130, 208
BstDEI CTNAG 2 cut(s) 99, 592
BstDSI CCRYGG 1 cut(s) 160
BstF5I GGATG 1 cut(s) 514
BstKTI GATC 5 cut(s) 69, 193, 619, 679, 807
BstMBI GATC 5 cut(s) 66, 190, 616, 676, 804
BstMWI GCNNNNNNNGC 5 cut(s) 300, 425, 542, 551, 560
BstNI CCWGG 2 cut(s) 785, 793
BstNSI RCATGY 1 cut(s) 132
BstSCI CCNGG 3 cut(s) 656, 783, 791
BstSFI CTRYAG 2 cut(s) 45, 597
BstSLI GKGCMC 1 cut(s) 791
BstV1I GCAGC 3 cut(s) 190, 323, 437
BstX2I RGATCY 1 cut(s) 190
BstXI CCANNNNNNTGG 1 cut(s) 619
BstYI RGATCY 1 cut(s) 190
Bsu15I ATCGAT 1 cut(s) 679
BsuRI GGCC 4 cut(s) 477, 603, 789, 796
BsuTUI ATCGAT 1 cut(s) 679
BtgI CCRYGG 1 cut(s) 160
BtsCI GGATG 1 cut(s) 514
BtsI GCAGTG 1 cut(s) 289
BtsIMutI CAGTG 3 cut(s) 28, 289, 672
Cac8I GCNNGC 2 cut(s) 130, 208
Cfr13I GGNCC 3 cut(s) 476, 787, 788
ClaI ATCGAT 1 cut(s) 679
Csp6I GTAC 2 cut(s) 42, 575
CviAII CATG 3 cut(s) 129, 230, 483
CviQI GTAC 2 cut(s) 42, 575
DdeI CTNAG 2 cut(s) 99, 592
DpnI GATC 5 cut(s) 68, 192, 618, 678, 806
DpnII GATC 5 cut(s) 66, 190, 616, 676, 804
EaeI YGGCCR 1 cut(s) 794
Eam1104I CTCTTC 1 cut(s) 426
EarI CTCTTC 1 cut(s) 426
Ecl136II GAGCTC 1 cut(s) 554
Eco147I AGGCCT 1 cut(s) 603
Eco24I GRGCYC 2 cut(s) 556, 791
Eco53kI GAGCTC 1 cut(s) 554
Eco57I CTGAAG 1 cut(s) 155
EcoICRI GAGCTC 1 cut(s) 554
EcoO109I RGGNCCY 2 cut(s) 476, 788
EcoRII CCWGG 2 cut(s) 783, 791
EcoT22I ATGCAT 1 cut(s) 259
EcoT38I GRGCYC 2 cut(s) 556, 791
FaeI CATG 3 cut(s) 132, 233, 486
FaqI GGGAC 1 cut(s) 372
FatI CATG 3 cut(s) 128, 229, 482
FauI CCCGC 1 cut(s) 895
FauNDI CATATG 1 cut(s) 755
FblI GTMKAC 1 cut(s) 867
Fnu4HI GCNGC 3 cut(s) 204, 312, 426
FokI GGATG 1 cut(s) 521
FriOI GRGCYC 2 cut(s) 556, 791
Fsp4HI GCNGC 3 cut(s) 204, 312, 426
FspBI CTAG 2 cut(s) 150, 497
GluI GCNGC 3 cut(s) 204, 312, 426
GsaI CCCAGC 1 cut(s) 393
GsuI CTGGAG 1 cut(s) 492
HaeIII GGCC 4 cut(s) 477, 603, 789, 796
HapII CCGG 2 cut(s) 633, 657
Hin1II CATG 3 cut(s) 132, 233, 486
HindIII AAGCTT 1 cut(s) 177
HinfI GANTC 3 cut(s) 165, 434, 706
HpaII CCGG 2 cut(s) 633, 657
HphI GGTGA 1 cut(s) 104
Hpy166II GTNNAC 3 cut(s) 355, 577, 868
Hpy188I TCNGA 1 cut(s) 321
Hpy188III TCNNGA 3 cut(s) 173, 471, 710
Hpy8I GTNNAC 3 cut(s) 355, 577, 868
Hpy99I CGWCG 1 cut(s) 115
HpyAV CCTTC 4 cut(s) 15, 179, 498, 557
HpyCH4III ACNGT 5 cut(s) 23, 278, 397, 490, 532
HpyCH4IV ACGT 3 cut(s) 113, 196, 573
HpyF10VI GCNNNNNNNGC 5 cut(s) 300, 425, 542, 551, 560
HpyF3I CTNAG 2 cut(s) 99, 592
HpySE526I ACGT 3 cut(s) 113, 196, 573
Hsp92II CATG 3 cut(s) 132, 233, 486
Kzo9I GATC 5 cut(s) 66, 190, 616, 676, 804
LmnI GCTCC 1 cut(s) 559
Lsp1109I GCAGC 3 cut(s) 190, 323, 437
LweI GCATC 3 cut(s) 244, 266, 900
MaeI CTAG 2 cut(s) 150, 497
MaeII ACGT 3 cut(s) 113, 196, 573
MaeIII GTNAC 2 cut(s) 145, 749
MalI GATC 5 cut(s) 68, 192, 618, 678, 806
MboI GATC 5 cut(s) 66, 190, 616, 676, 804
MboII GAAGA 3 cut(s) 443, 513, 841
MflI RGATCY 1 cut(s) 190
MhlI GDGCHC 3 cut(s) 556, 640, 791
MlsI TGGCCA 1 cut(s) 796
MluCI AATT 2 cut(s) 328, 853
MluNI TGGCCA 1 cut(s) 796
MlyI GAGTC 3 cut(s) 174, 443, 715
MnlI CCTC 8 cut(s) 74, 77, 88, 221, 332, 467, 490, 819
Mox20I TGGCCA 1 cut(s) 796
Mph1103I ATGCAT 1 cut(s) 259
MscI TGGCCA 1 cut(s) 796
MseI TTAA 1 cut(s) 722
MslI CAYNNNNRTG 1 cut(s) 228
Msp20I TGGCCA 1 cut(s) 796
MspA1I CMGCKG 3 cut(s) 103, 596, 902
MspI CCGG 2 cut(s) 633, 657
MspR9I CCNGG 3 cut(s) 658, 785, 793
Mva1269I GAATGC 1 cut(s) 385
MvaI CCWGG 2 cut(s) 785, 793
MwoI GCNNNNNNNGC 5 cut(s) 300, 425, 542, 551, 560
NciI CCSGG 1 cut(s) 658
NdeI CATATG 1 cut(s) 755
NdeII GATC 5 cut(s) 66, 190, 616, 676, 804
NlaIII CATG 3 cut(s) 132, 233, 486
NlaIV GGNNCC 4 cut(s) 192, 478, 789, 790
NmuCI GTSAC 2 cut(s) 145, 749
NsiI ATGCAT 1 cut(s) 259
NspI RCATGY 1 cut(s) 132
PaeI GCATGC 1 cut(s) 132
PceI AGGCCT 1 cut(s) 603
PctI GAATGC 1 cut(s) 385
PflMI CCANNNNNTGG 1 cut(s) 767
PkrI GCNGC 3 cut(s) 205, 313, 427
PleI GAGTC 3 cut(s) 173, 442, 714
PpsI GAGTC 3 cut(s) 173, 442, 714
Ppu21I YACGTR 1 cut(s) 197
Psp124BI GAGCTC 1 cut(s) 556
Psp6I CCWGG 2 cut(s) 783, 791
PspFI CCCAGC 1 cut(s) 389
PspGI CCWGG 2 cut(s) 783, 791
PspN4I GGNNCC 4 cut(s) 192, 478, 789, 790
PspOMI GGGCCC 1 cut(s) 787
PspPI GGNCC 3 cut(s) 476, 787, 788
PstI CTGCAG 1 cut(s) 49
PsuI RGATCY 1 cut(s) 190
PvuII CAGCTG 2 cut(s) 103, 596
RsaI GTAC 2 cut(s) 43, 576
RsaNI GTAC 2 cut(s) 42, 575
RseI CAYNNNNRTG 1 cut(s) 228
SacI GAGCTC 1 cut(s) 556
SaqAI TTAA 1 cut(s) 722
SatI GCNGC 3 cut(s) 204, 312, 426
Sau3AI GATC 5 cut(s) 66, 190, 616, 676, 804
Sau96I GGNCC 3 cut(s) 476, 787, 788
ScaI AGTACT 1 cut(s) 43
SchI GAGTC 3 cut(s) 174, 443, 715
ScrFI CCNGG 3 cut(s) 658, 785, 793
SduI GDGCHC 3 cut(s) 556, 640, 791
SfaNI GCATC 3 cut(s) 244, 266, 900
SfcI CTRYAG 2 cut(s) 45, 597
SmiMI CAYNNNNRTG 1 cut(s) 228
SmlI CTYRAG 1 cut(s) 745
SmoI CTYRAG 1 cut(s) 745
SphI GCATGC 1 cut(s) 132
Sse9I AATT 2 cut(s) 328, 853
SseBI AGGCCT 1 cut(s) 603
SsiI CCGC 2 cut(s) 561, 902
SspMI CTAG 2 cut(s) 150, 497
SstI GAGCTC 1 cut(s) 556
StuI AGGCCT 1 cut(s) 603
StyD4I CCNGG 3 cut(s) 656, 783, 791
TaaI ACNGT 5 cut(s) 23, 278, 397, 490, 532
TaiI ACGT 3 cut(s) 116, 199, 576
TaqI TCGA 6 cut(s) 288, 550, 679, 728, 827, 895
TasI AATT 2 cut(s) 328, 853
TatI WGTACW 1 cut(s) 41
Tru1I TTAA 1 cut(s) 722
Tru9I TTAA 1 cut(s) 722
TscAI CASTG 3 cut(s) 28, 289, 679
TseFI GTSAC 2 cut(s) 145, 749
TseI GCWGC 3 cut(s) 203, 311, 425
Tsp45I GTSAC 2 cut(s) 145, 749
TspDTI ATGAA 1 cut(s) 138
TspGWI ACGGA 2 cut(s) 149, 203
TspRI CASTG 3 cut(s) 28, 289, 679
Van91I CCANNNNNTGG 1 cut(s) 767
XceI RCATGY 1 cut(s) 132
XmiI GTMKAC 1 cut(s) 867
XspI CTAG 2 cut(s) 150, 497
ZrmI AGTACT 1 cut(s) 43
Zsp2I ATGCAT 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.