RLG00000036883

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0002716
Physical Location & Seq
Reverse (-)
86104657 .. 86105133
477 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036883

Sequence Viewer

Length: 477 bp
ATGGACAACATTGATCAGATTTGCATATTCACAGGTGCTCACACATTTGGACGCGCCCAGTGTCAGTTTTTCACTGATCGATTATACAACTTCAACGACACAGGGAGTCCTGACCAAACCTTAAACTCGACCTACATAGAAACCTTGAGTGACATATGCCCACAAAATGGGAATGGGAGTGTCCTGGCCAATTTTGATCCCTCAACACCTGATGGTTTCGACAGCAACTATTTCTCAAACCTTCATGTTCATAAGGGTGTACTCCAAAGCGACCAAGAGCTGTTTTCAACTAGCAGGGCTGATACCATTGACATAGTTAACAACTTCAGCGTTAATCAGACCACATTCTTTGAGAGCTTTGTGGAATTGATGATTAAAATGGGGAATATAAGCCTCTTGACAGGAACTGATGGAGAGATTCGATTGAACTGCAGTAGGTTAACGAAGATTCATTTGGATCATCTGCTGCTTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004601 GO:0005488 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009505 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009636 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009826 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016209 GO:0016491 GO:0016684 GO:0020037 GO:0030312 GO:0031090 GO:0031347 GO:0031349 GO:0032502 GO:0032989 GO:0035821 GO:0040007 GO:0040008 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0045926 GO:0046906 GO:0048037 GO:0048046 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0048589 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0055114 GO:0060560 GO:0065007 GO:0070887 GO:0071840 GO:0071944 GO:0072593 GO:0075136 GO:0080134 GO:0097159 GO:0097237 GO:0098542 GO:0098588 GO:0098754 GO:0098805 GO:0098869 GO:1901363 GO:1990748
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

159

Amino Acids

17.69

Weight (kDa)

4.5

Isoelectric Point (pI)

26.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 7 - 109 6.6e-23 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 167
AccII CGCG 1 cut(s) 54
AclWI GGATC 2 cut(s) 191, 465
AcoI YGGCCR 1 cut(s) 186
AcuI CTGAAG 1 cut(s) 310
AfaI GTAC 1 cut(s) 261
AfiI CCNNNNNNNGG 1 cut(s) 167
AgsI TTSAA 3 cut(s) 94, 288, 427
AjnI CCWGG 1 cut(s) 183
AjuI GAANNNNNNNTTGG 2 cut(s) 437, 469
AluBI AGCT 2 cut(s) 280, 357
AluI AGCT 2 cut(s) 280, 357
Alw21I GWGCWC 1 cut(s) 40
AlwI GGATC 2 cut(s) 191, 465
AlwNI CAGNNNCTG 1 cut(s) 407
AoxI GGCC 1 cut(s) 186
ApeKI GCWGC 1 cut(s) 466
AspLEI GCGC 1 cut(s) 56
BalI TGGCCA 1 cut(s) 188
Bbv12I GWGCWC 1 cut(s) 40
BbvI GCAGC 1 cut(s) 453
BccI CCATC 2 cut(s) 206, 404
BcgI CGANNNNNNTGC 2 cut(s) 411, 445
BciT130I CCWGG 1 cut(s) 185
BclI TGATCA 1 cut(s) 13
BfaI CTAG 2 cut(s) 291, 475
BfmI CTRYAG 1 cut(s) 430
BisI GCNGC 1 cut(s) 467
BlsI GCNGC 1 cut(s) 468
Bme1390I CCNGG 1 cut(s) 185
BmrFI CCNGG 1 cut(s) 185
BmrI ACTGGG 1 cut(s) 52
BmuI ACTGGG 1 cut(s) 52
BpuEI CTTGAG 1 cut(s) 166
Bsa29I ATCGAT 1 cut(s) 79
Bsc4I CCNNNNNNNGG 1 cut(s) 167
Bse1I ACTGG 1 cut(s) 58
BseBI CCWGG 1 cut(s) 185
BseCI ATCGAT 1 cut(s) 79
BseLI CCNNNNNNNGG 1 cut(s) 167
BseNI ACTGG 1 cut(s) 58
BseXI GCAGC 1 cut(s) 453
Bsh1236I CGCG 1 cut(s) 54
BshFI GGCC 1 cut(s) 188
BshVI ATCGAT 1 cut(s) 79
BsiHKAI GWGCWC 1 cut(s) 40
BslI CCNNNNNNNGG 1 cut(s) 167
BsnI GGCC 1 cut(s) 188
Bsp1286I GDGCHC 1 cut(s) 40
Bsp143I GATC 4 cut(s) 13, 76, 196, 457
BspANI GGCC 1 cut(s) 188
BspDI ATCGAT 1 cut(s) 79
BspFNI CGCG 1 cut(s) 54
BspMAI CTGCAG 1 cut(s) 434
BspPI GGATC 2 cut(s) 191, 465
BsrI ACTGG 1 cut(s) 58
BssMI GATC 4 cut(s) 13, 76, 196, 457
Bst2UI CCWGG 1 cut(s) 185
BstFNI CGCG 1 cut(s) 54
BstHHI GCGC 1 cut(s) 56
BstKTI GATC 4 cut(s) 16, 79, 199, 460
BstMBI GATC 4 cut(s) 13, 76, 196, 457
BstNI CCWGG 1 cut(s) 185
BstSCI CCNGG 1 cut(s) 183
BstSFI CTRYAG 1 cut(s) 430
BstUI CGCG 1 cut(s) 54
BstV1I GCAGC 1 cut(s) 453
Bsu15I ATCGAT 1 cut(s) 79
BsuRI GGCC 1 cut(s) 188
BsuTUI ATCGAT 1 cut(s) 79
BtsIMutI CAGTG 2 cut(s) 65, 72
CaiI CAGNNNCTG 1 cut(s) 407
CfoI GCGC 1 cut(s) 56
ClaI ATCGAT 1 cut(s) 79
CseI GACGC 1 cut(s) 60
Csp6I GTAC 1 cut(s) 260
CspCI CAANNNNNGTGG 2 cut(s) 331, 366
CviAII CATG 1 cut(s) 245
CviJI RGCY 5 cut(s) 188, 280, 299, 357, 393
CviKI_1 RGCY 5 cut(s) 188, 280, 299, 357, 393
CviQI GTAC 1 cut(s) 260
DpnI GATC 4 cut(s) 15, 78, 198, 459
DpnII GATC 4 cut(s) 13, 76, 196, 457
EaeI YGGCCR 1 cut(s) 186
Eco57I CTGAAG 1 cut(s) 310
EcoRII CCWGG 1 cut(s) 183
FaeI CATG 1 cut(s) 248
FaiI YATR 9 cut(s) 26, 85, 137, 155, 157, 246, 252, 314, 389
FatI CATG 1 cut(s) 244
FauNDI CATATG 1 cut(s) 155
FbaI TGATCA 1 cut(s) 13
Fnu4HI GCNGC 1 cut(s) 467
Fsp4HI GCNGC 1 cut(s) 467
FspBI CTAG 2 cut(s) 291, 475
GlaI GCGC 1 cut(s) 55
GluI GCNGC 1 cut(s) 467
HaeIII GGCC 1 cut(s) 188
HgaI GACGC 1 cut(s) 60
HhaI GCGC 1 cut(s) 56
Hin1II CATG 1 cut(s) 248
Hin6I GCGC 1 cut(s) 54
HinP1I GCGC 1 cut(s) 54
HincII GTYRAC 2 cut(s) 319, 441
HindII GTYRAC 2 cut(s) 319, 441
HinfI GANTC 3 cut(s) 106, 418, 448
HpaI GTTAAC 2 cut(s) 319, 441
Hpy166II GTNNAC 3 cut(s) 260, 319, 441
Hpy188I TCNGA 2 cut(s) 18, 339
Hpy188III TCNNGA 2 cut(s) 110, 397
Hpy8I GTNNAC 3 cut(s) 260, 319, 441
HpyAV CCTTC 1 cut(s) 251
HpyCH4V TGCA 2 cut(s) 24, 432
Hsp92II CATG 1 cut(s) 248
HspAI GCGC 1 cut(s) 54
Ksp22I TGATCA 1 cut(s) 13
KspAI GTTAAC 2 cut(s) 319, 441
Kzo9I GATC 4 cut(s) 13, 76, 196, 457
LpnPI CCDG 9 cut(s) 18, 71, 87, 123, 170, 197, 222, 280, 387
Lsp1109I GCAGC 1 cut(s) 453
MaeI CTAG 2 cut(s) 291, 475
MaeIII GTNAC 1 cut(s) 149
MalI GATC 4 cut(s) 15, 78, 198, 459
MboI GATC 4 cut(s) 13, 76, 196, 457
MboII GAAGA 1 cut(s) 457
MhlI GDGCHC 1 cut(s) 40
MlsI TGGCCA 1 cut(s) 188
MluCI AATT 2 cut(s) 190, 365
MluNI TGGCCA 1 cut(s) 188
MlyI GAGTC 1 cut(s) 115
MnlI CCTC 2 cut(s) 211, 404
Mox20I TGGCCA 1 cut(s) 188
MscI TGGCCA 1 cut(s) 188
MseI TTAA 5 cut(s) 122, 318, 333, 375, 440
MslI CAYNNNNRTG 1 cut(s) 255
Msp20I TGGCCA 1 cut(s) 188
MspR9I CCNGG 1 cut(s) 185
MvaI CCWGG 1 cut(s) 185
MvnI CGCG 1 cut(s) 54
NdeI CATATG 1 cut(s) 155
NdeII GATC 4 cut(s) 13, 76, 196, 457
NlaIII CATG 1 cut(s) 248
NmuCI GTSAC 1 cut(s) 149
PfeI GAWTC 2 cut(s) 418, 448
PflMI CCANNNNNTGG 1 cut(s) 167
PkrI GCNGC 1 cut(s) 468
PleI GAGTC 1 cut(s) 114
PpsI GAGTC 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 183
PspGI CCWGG 1 cut(s) 183
PstI CTGCAG 1 cut(s) 434
PstNI CAGNNNCTG 1 cut(s) 407
RsaI GTAC 1 cut(s) 261
RsaNI GTAC 1 cut(s) 260
RseI CAYNNNNRTG 1 cut(s) 255
SaqAI TTAA 5 cut(s) 122, 318, 333, 375, 440
SatI GCNGC 1 cut(s) 467
Sau3AI GATC 4 cut(s) 13, 76, 196, 457
SchI GAGTC 1 cut(s) 115
ScrFI CCNGG 1 cut(s) 185
SduI GDGCHC 1 cut(s) 40
SetI ASST 9 cut(s) 37, 122, 134, 146, 211, 243, 282, 359, 440
SfcI CTRYAG 1 cut(s) 430
SmiMI CAYNNNNRTG 1 cut(s) 255
SmlI CTYRAG 1 cut(s) 145
SmoI CTYRAG 1 cut(s) 145
Sse9I AATT 2 cut(s) 190, 365
SspMI CTAG 2 cut(s) 291, 475
StyD4I CCNGG 1 cut(s) 183
TaqI TCGA 4 cut(s) 79, 128, 219, 421
TasI AATT 2 cut(s) 190, 365
TatI WGTACW 1 cut(s) 259
TfiI GAWTC 2 cut(s) 418, 448
Tru1I TTAA 5 cut(s) 122, 318, 333, 375, 440
Tru9I TTAA 5 cut(s) 122, 318, 333, 375, 440
TscAI CASTG 2 cut(s) 65, 79
TseFI GTSAC 1 cut(s) 149
TseI GCWGC 1 cut(s) 466
Tsp45I GTSAC 1 cut(s) 149
TspDTI ATGAA 3 cut(s) 233, 239, 440
TspRI CASTG 2 cut(s) 65, 79
Van91I CCANNNNNTGG 1 cut(s) 167
XspI CTAG 2 cut(s) 291, 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.