RchiOBHm_Chr5g0080921

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0002716
Physical Location & Seq
Forward (+)
86945892 .. 86946932
1041 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35520

Sequence Viewer

Length: 732 bp
ATGGCACGTGTCAGAACAACACACATTAAGACTGCATTGGAGAATGCTTGTCCCAGCACGGTTTCTTGTGCTGATATTCTTGCCATTGCAGCAGAAGAGTCTGTTTCTTTGTCTGGAGGCCCCTCATGGACAGTCCTACTAGGAAGAAGGGATGGAACAACAGCAAACCGAACAGCTGCTAATGAAGCCCTTCCAGCTCCCACTTCAAACCTTGATGTACTCAAGTCCAAGTTCTCAGCTGTAGGCCTAAACACCACCGATCTGGTTGCACTATCCGGTGCTCACACATTTGGACGCGCCCAGTGTCAGTTTTTCACTGATCGATTATACAACTTCAACAACACAGGGAGTCCTGACCAAACCTTAAACTCGACCTACATAGAAACCTTGAGAGGCATATGCCCACAAAATGGGAATGGGAGTGTCCTGGCCAATTTTGATCCCTCAACACCTGATGGTTTCGACAGCAACTATTTCTCTAACCTTCAAGTTCATAAGGGTCTACTCCAAAGCGACCAAGTGCTGTTTTCGACTAGCGGGGCTGATACCATTGACATGGTTAACAACTTCAGCGTTAATCAGACCACATTCTTTGAGAGCTTTGTGGAATCGATGATTAAAATGGGGAATATAAGCCTCTTGACAGGAACTGATGGAGAGATTCGATTGAACTGCAGTAGGGTTAACGAAGATTCATTTGGATCATCTGCTGCTTTGCTAGCTGAGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004601 GO:0005488 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009505 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009636 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009826 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016209 GO:0016491 GO:0016684 GO:0020037 GO:0030312 GO:0031090 GO:0031347 GO:0031349 GO:0032502 GO:0032989 GO:0035821 GO:0040007 GO:0040008 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0045926 GO:0046906 GO:0048037 GO:0048046 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0048589 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0055114 GO:0060560 GO:0065007 GO:0070887 GO:0071840 GO:0071944 GO:0072593 GO:0075136 GO:0080134 GO:0097159 GO:0097237 GO:0098542 GO:0098588 GO:0098754 GO:0098805 GO:0098869 GO:1901363 GO:1990748
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

243

Amino Acids

25.98

Weight (kDa)

4.71

Isoelectric Point (pI)

34.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 8 - 191 6.4e-60 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 410
AccI GTMKAC 1 cut(s) 502
AccII CGCG 1 cut(s) 297
AciI CCGC 1 cut(s) 537
AclWI GGATC 2 cut(s) 434, 709
AcoI YGGCCR 1 cut(s) 429
AcuI CTGAAG 1 cut(s) 553
AcvI CACGTG 1 cut(s) 8
AfaI GTAC 2 cut(s) 219, 728
AfiI CCNNNNNNNGG 1 cut(s) 410
AflIII ACRYGT 1 cut(s) 7
AgsI TTSAA 4 cut(s) 207, 337, 488, 670
AjnI CCWGG 1 cut(s) 426
AjuI GAANNNNNNNTTGG 2 cut(s) 681, 713
AluBI AGCT 5 cut(s) 176, 197, 239, 600, 722
AluI AGCT 5 cut(s) 176, 197, 239, 600, 722
Alw21I GWGCWC 1 cut(s) 283
AlwI GGATC 2 cut(s) 434, 709
AlwNI CAGNNNCTG 1 cut(s) 650
AoxI GGCC 3 cut(s) 118, 244, 429
ApeKI GCWGC 3 cut(s) 89, 176, 710
Asp700I GAANNNNTTC 1 cut(s) 189
AspLEI GCGC 1 cut(s) 299
AspS9I GGNCC 1 cut(s) 119
AsuNHI GCTAGC 1 cut(s) 718
BalI TGGCCA 1 cut(s) 431
BbrPI CACGTG 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 283
BbvI GCAGC 3 cut(s) 101, 163, 697
BccI CCATC 3 cut(s) 146, 449, 647
BcgI CGANNNNNNTGC 4 cut(s) 248, 282, 654, 688
BciT130I CCWGG 1 cut(s) 428
BfaI CTAG 3 cut(s) 140, 534, 719
BfmI CTRYAG 2 cut(s) 240, 673
BisI GCNGC 3 cut(s) 90, 177, 711
BlsI GCNGC 3 cut(s) 91, 178, 712
BmcAI AGTACT 1 cut(s) 728
Bme1390I CCNGG 1 cut(s) 428
BmgT120I GGNCC 1 cut(s) 119
BmiI GGNNCC 1 cut(s) 121
BmrFI CCNGG 1 cut(s) 428
BmrI ACTGGG 1 cut(s) 295
BmtI GCTAGC 1 cut(s) 722
BmuI ACTGGG 1 cut(s) 295
BpmI CTGGAG 1 cut(s) 135
BpuEI CTTGAG 2 cut(s) 206, 409
Bsa29I ATCGAT 2 cut(s) 322, 611
BsaAI YACGTR 1 cut(s) 8
BsaWI WCCGGW 1 cut(s) 275
Bsc4I CCNNNNNNNGG 1 cut(s) 410
Bse1I ACTGG 1 cut(s) 301
Bse3DI GCAATG 1 cut(s) 84
BseBI CCWGG 1 cut(s) 428
BseCI ATCGAT 2 cut(s) 322, 611
BseGI GGATG 1 cut(s) 157
BseLI CCNNNNNNNGG 1 cut(s) 410
BseMI GCAATG 1 cut(s) 84
BseMII CTCAG 2 cut(s) 249, 714
BseNI ACTGG 1 cut(s) 301
BseXI GCAGC 3 cut(s) 101, 163, 697
BseYI CCCAGC 1 cut(s) 53
Bsh1236I CGCG 1 cut(s) 297
BshFI GGCC 3 cut(s) 120, 246, 431
BshVI ATCGAT 2 cut(s) 322, 611
BsiHKAI GWGCWC 1 cut(s) 283
BsiSI CCGG 1 cut(s) 276
BslFI GGGAC 1 cut(s) 36
BslI CCNNNNNNNGG 1 cut(s) 410
BsmFI GGGAC 1 cut(s) 36
BsmI GAATGC 1 cut(s) 49
BsnI GGCC 3 cut(s) 120, 246, 431
Bsp1286I GDGCHC 1 cut(s) 283
Bsp143I GATC 4 cut(s) 259, 319, 439, 701
BspACI CCGC 1 cut(s) 537
BspANI GGCC 3 cut(s) 120, 246, 431
BspCNI CTCAG 2 cut(s) 248, 715
BspDI ATCGAT 2 cut(s) 322, 611
BspFNI CGCG 1 cut(s) 297
BspLI GGNNCC 1 cut(s) 121
BspMAI CTGCAG 1 cut(s) 677
BspOI GCTAGC 1 cut(s) 722
BspPI GGATC 2 cut(s) 434, 709
BsrDI GCAATG 1 cut(s) 84
BsrI ACTGG 1 cut(s) 301
BssMI GATC 4 cut(s) 259, 319, 439, 701
Bst2UI CCWGG 1 cut(s) 428
Bst4CI ACNGT 2 cut(s) 61, 133
Bst6I CTCTTC 1 cut(s) 90
BstBAI YACGTR 1 cut(s) 8
BstC8I GCNNGC 1 cut(s) 720
BstDEI CTNAG 2 cut(s) 235, 723
BstF5I GGATG 1 cut(s) 157
BstFNI CGCG 1 cut(s) 297
BstHHI GCGC 1 cut(s) 299
BstKTI GATC 4 cut(s) 262, 322, 442, 704
BstMBI GATC 4 cut(s) 259, 319, 439, 701
BstMWI GCNNNNNNNGC 4 cut(s) 89, 185, 194, 719
BstNI CCWGG 1 cut(s) 428
BstSCI CCNGG 1 cut(s) 426
BstSFI CTRYAG 2 cut(s) 240, 673
BstUI CGCG 1 cut(s) 297
BstV1I GCAGC 3 cut(s) 101, 163, 697
BstXI CCANNNNNNTGG 2 cut(s) 262, 556
Bsu15I ATCGAT 2 cut(s) 322, 611
BsuRI GGCC 3 cut(s) 120, 246, 431
BsuTUI ATCGAT 2 cut(s) 322, 611
BtsCI GGATG 1 cut(s) 157
BtsIMutI CAGTG 2 cut(s) 308, 315
Cac8I GCNNGC 1 cut(s) 720
CaiI CAGNNNCTG 1 cut(s) 650
CfoI GCGC 1 cut(s) 299
Cfr13I GGNCC 1 cut(s) 119
ClaI ATCGAT 2 cut(s) 322, 611
CseI GACGC 1 cut(s) 303
Csp6I GTAC 2 cut(s) 218, 727
CspCI CAANNNNNGTGG 2 cut(s) 574, 609
CviAII CATG 2 cut(s) 126, 556
CviQI GTAC 2 cut(s) 218, 727
DdeI CTNAG 2 cut(s) 235, 723
DpnI GATC 4 cut(s) 261, 321, 441, 703
DpnII GATC 4 cut(s) 259, 319, 439, 701
EaeI YGGCCR 1 cut(s) 429
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
Eco147I AGGCCT 1 cut(s) 246
Eco57I CTGAAG 1 cut(s) 553
Eco72I CACGTG 1 cut(s) 8
EcoO109I RGGNCCY 1 cut(s) 119
EcoRII CCWGG 1 cut(s) 426
FaeI CATG 2 cut(s) 129, 559
FaiI YATR 8 cut(s) 127, 328, 380, 398, 400, 495, 557, 632
FaqI GGGAC 1 cut(s) 36
FatI CATG 2 cut(s) 125, 555
FauI CCCGC 1 cut(s) 530
FauNDI CATATG 1 cut(s) 398
FblI GTMKAC 1 cut(s) 502
Fnu4HI GCNGC 3 cut(s) 90, 177, 711
FokI GGATG 1 cut(s) 164
Fsp4HI GCNGC 3 cut(s) 90, 177, 711
FspBI CTAG 3 cut(s) 140, 534, 719
GlaI GCGC 1 cut(s) 298
GluI GCNGC 3 cut(s) 90, 177, 711
GsaI CCCAGC 1 cut(s) 57
GsuI CTGGAG 1 cut(s) 135
HaeIII GGCC 3 cut(s) 120, 246, 431
HapII CCGG 1 cut(s) 276
HgaI GACGC 1 cut(s) 303
HhaI GCGC 1 cut(s) 299
Hin1II CATG 2 cut(s) 129, 559
Hin6I GCGC 1 cut(s) 297
HinP1I GCGC 1 cut(s) 297
HincII GTYRAC 2 cut(s) 562, 685
HindII GTYRAC 2 cut(s) 562, 685
HinfI GANTC 5 cut(s) 98, 349, 608, 661, 692
HpaI GTTAAC 2 cut(s) 562, 685
HpaII CCGG 1 cut(s) 276
Hpy166II GTNNAC 3 cut(s) 503, 562, 685
Hpy188I TCNGA 2 cut(s) 14, 582
Hpy188III TCNNGA 3 cut(s) 114, 353, 640
Hpy8I GTNNAC 3 cut(s) 503, 562, 685
HpyAV CCTTC 3 cut(s) 141, 200, 494
HpyCH4III ACNGT 2 cut(s) 61, 133
HpyCH4IV ACGT 1 cut(s) 7
HpyCH4V TGCA 4 cut(s) 35, 89, 269, 675
HpyF10VI GCNNNNNNNGC 4 cut(s) 89, 185, 194, 719
HpyF3I CTNAG 2 cut(s) 235, 723
HpySE526I ACGT 1 cut(s) 7
Hsp92II CATG 2 cut(s) 129, 559
HspAI GCGC 1 cut(s) 297
KspAI GTTAAC 2 cut(s) 562, 685
Kzo9I GATC 4 cut(s) 259, 319, 439, 701
LmnI GCTCC 1 cut(s) 202
Lsp1109I GCAGC 3 cut(s) 101, 163, 697
MaeI CTAG 3 cut(s) 140, 534, 719
MaeII ACGT 1 cut(s) 7
MalI GATC 4 cut(s) 261, 321, 441, 703
MboI GATC 4 cut(s) 259, 319, 439, 701
MboII GAAGA 3 cut(s) 107, 156, 701
MhlI GDGCHC 1 cut(s) 283
MlsI TGGCCA 1 cut(s) 431
MluCI AATT 1 cut(s) 433
MluNI TGGCCA 1 cut(s) 431
MlyI GAGTC 2 cut(s) 107, 358
MnlI CCTC 5 cut(s) 110, 133, 386, 454, 647
Mox20I TGGCCA 1 cut(s) 431
MroXI GAANNNNTTC 1 cut(s) 189
MscI TGGCCA 1 cut(s) 431
MseI TTAA 6 cut(s) 27, 365, 561, 576, 618, 684
MslI CAYNNNNRTG 1 cut(s) 554
Msp20I TGGCCA 1 cut(s) 431
MspA1I CMGCKG 2 cut(s) 176, 239
MspI CCGG 1 cut(s) 276
MspR9I CCNGG 1 cut(s) 428
Mva1269I GAATGC 1 cut(s) 49
MvaI CCWGG 1 cut(s) 428
MvnI CGCG 1 cut(s) 297
MwoI GCNNNNNNNGC 4 cut(s) 89, 185, 194, 719
NdeI CATATG 1 cut(s) 398
NdeII GATC 4 cut(s) 259, 319, 439, 701
NheI GCTAGC 1 cut(s) 718
NlaIII CATG 2 cut(s) 129, 559
NlaIV GGNNCC 1 cut(s) 121
PceI AGGCCT 1 cut(s) 246
PctI GAATGC 1 cut(s) 49
PdmI GAANNNNTTC 1 cut(s) 189
PfeI GAWTC 3 cut(s) 608, 661, 692
PflMI CCANNNNNTGG 1 cut(s) 410
PkrI GCNGC 3 cut(s) 91, 178, 712
PleI GAGTC 2 cut(s) 106, 357
PmaCI CACGTG 1 cut(s) 8
PmlI CACGTG 1 cut(s) 8
PpsI GAGTC 2 cut(s) 106, 357
Ppu21I YACGTR 1 cut(s) 8
Psp6I CCWGG 1 cut(s) 426
PspCI CACGTG 1 cut(s) 8
PspFI CCCAGC 1 cut(s) 53
PspGI CCWGG 1 cut(s) 426
PspN4I GGNNCC 1 cut(s) 121
PspPI GGNCC 1 cut(s) 119
PstI CTGCAG 1 cut(s) 677
PstNI CAGNNNCTG 1 cut(s) 650
PvuII CAGCTG 2 cut(s) 176, 239
RsaI GTAC 2 cut(s) 219, 728
RsaNI GTAC 2 cut(s) 218, 727
RseI CAYNNNNRTG 1 cut(s) 554
SaqAI TTAA 6 cut(s) 27, 365, 561, 576, 618, 684
SatI GCNGC 3 cut(s) 90, 177, 711
Sau3AI GATC 4 cut(s) 259, 319, 439, 701
Sau96I GGNCC 1 cut(s) 119
ScaI AGTACT 1 cut(s) 728
SchI GAGTC 2 cut(s) 107, 358
ScrFI CCNGG 1 cut(s) 428
SduI GDGCHC 1 cut(s) 283
SfcI CTRYAG 2 cut(s) 240, 673
SmiMI CAYNNNNRTG 1 cut(s) 554
SmlI CTYRAG 2 cut(s) 221, 388
SmoI CTYRAG 2 cut(s) 221, 388
Sse9I AATT 1 cut(s) 433
SseBI AGGCCT 1 cut(s) 246
SsiI CCGC 1 cut(s) 537
SspMI CTAG 3 cut(s) 140, 534, 719
StuI AGGCCT 1 cut(s) 246
StyD4I CCNGG 1 cut(s) 426
TaaI ACNGT 2 cut(s) 61, 133
TaiI ACGT 1 cut(s) 10
TaqI TCGA 6 cut(s) 322, 371, 462, 530, 611, 664
TasI AATT 1 cut(s) 433
TatI WGTACW 2 cut(s) 217, 726
TfiI GAWTC 3 cut(s) 608, 661, 692
Tru1I TTAA 6 cut(s) 27, 365, 561, 576, 618, 684
Tru9I TTAA 6 cut(s) 27, 365, 561, 576, 618, 684
TscAI CASTG 2 cut(s) 308, 322
TseI GCWGC 3 cut(s) 89, 176, 710
TspDTI ATGAA 3 cut(s) 198, 482, 684
TspRI CASTG 2 cut(s) 308, 322
Van91I CCANNNNNTGG 1 cut(s) 410
XmiI GTMKAC 1 cut(s) 502
XmnI GAANNNNTTC 1 cut(s) 189
XspI CTAG 3 cut(s) 140, 534, 719
ZrmI AGTACT 1 cut(s) 728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.